|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070298 ID=TCONS_00070298|Name=TCONS_00070298|organism=Clytia hemisphaerica|type=transcript|length=2392bp
CATTTCCCCGATTGGTATTCTTGGAACTTTCAAATAACCCGATTCGGAAC
ATACCAGCTTTCGCGTTCAAAGGGATACCATCGTTAAAGGAACTCGTCAT
TACGACAGATACGATAGTTGAATCTTCATTTGACGGATTGGAACTAGAAT
CGTTGACGTTAATTGGAGTTAAAATGGAAACCTTGCCGGCAAGATTTCTA
GATTCAAGCCGCGACACGTTGAAAGCTCTTACGGTACAAAACACAGAAAT
TGAGAAATTGGACATTTTGAAATTCGATTTTCCAAACTTGGAGACATTGA
TTTTGACAGGAAATCGTTTGACAACTTTTGTGTTTGACGGTAAGACACCA
AACCTCAAAGATGTCACtttgtcaaaaaataagtttaaaCAGATCCAATG
CATACAACCTCTTCAAAATGTCACATATCTTGATGTCAGCTATAATCAGC
TGAGAAATTTAACAGAAGATTTTTCCCGATGTTTTTCGAATTTGACAGAT
GTGAAATTGCAAAATAACGCCTTATCTACACTCCCAATAGGCTTTTTCTC
CAGCCTACAAAACACACTTCAATCGATCGACTTAAGTCATAACCCTTGGA
CAACTCTCTCAACAAACGAACTTGGGCTAATGTTAAAATTGAAAGAACTC
AGGCTACAAAATATGGGTTCGATAGACATAGACCTTTCTCCAATGGAGAA
TTGGGAAAAAGCCGTGGCAGAAAAAGGTCTTATCTTAGATCTTTCTTATA
ACACTAAATTGAAGAGTTATCAAATTCCACGAAACATAAAACTTGACAAA
CTTATTTTCACCAACAGCGAATTGAAAACATTCCCAATCTTAAACCACAA
ACATGGTGATATAGTTCACATTGAAATTCAAATGAACAACCTAGAGAAAC
TCATCATCGCTCGACCTGTCGCACATTTGAATGCTTCACACAACAAAATA
CGTTTCATCAATATCTCATATGAATGGACCAAGATTGATATTCTGGATGT
TGGTCATAACTTGATCGAAAGCACACGGAACATACACATTTATCCGAACA
CATATCTAAAATACGTCAATTTAACTTTCAATAAACTAAAACAGATCAAT
CCTTTCTATCAAGCACCGCCAGACATACGAGGGAAATATGGCTACAAGAT
CAGCCCCATACGCATGGATTTTTCGTATAATTCGATCAGTTCCATTAATC
GTTCCGCATTCTTTGGTCTTCAACCGATGGTCTCTTTAAAACTTAATAAC
AACAACATAACCAGTCTACCAGATGATCTCTTACTGCAACAGCCTCACTT
GAATAAGCTTGACCTCAATCATAATAAACTACAACAAGTACCGACTGAAT
TACTACGAACCATCAAACTTCTCTCCTACCTCCTACTCAAAGATAACCAA
ATCAATCAAATCTTACCTTCAGATTTACAAGGTTTGTTCAGGCTTCTCTC
ACTGGATTTATCGTCTAATTACCATCTTTCAAAACTGCCTTCCAATTTTT
TATCCAGGAATAAGCGTCTTCGTCGTTTCTCTATTTTCAATACGTCAGTC
GTCTGCACCTGTAACTTAACCACAATCTTCAAGAACATCATAATGACAAA
TAAAAGACTAAAATATGATGGACATTGTCTTGATGAGTCAACATCTCATT
TACAACATTTAAAGACAATAGTTGAAACAAGCGAGGCAAATCCTTGGCTT
TGCGATACAGATTGTCCAATTTTGAAATGCATTTTACACAACGAATGCAC
TCAACGAATCAATACTTCCATGAGTTTCAACTGTTCGTGTCAAACTCTTA
ATAACAACACTGACTCAAATACAATCTTCAATTTTCCAATCTTTAATAAC
CCTCCTTGGATCGCACCGGCTAAAGAACCACCGTTTTCTAGAAACTTAAT
TTTCTGTCAAACGACGTCTTGCTTCAGTGATACCGATCTTTTATCAAGAA
ATGGGACAAATAATTCTACAAGAAGGACTGACCCCTCATTTAGACACCCA
GAATCGAAATGTAGATGGAGCCTAAACAAAgaaagtaatttacagaccgg
aattCTTGTCGAATGTTCAAGGATTCCtttattaactgaaatattttgta
aaccttttgaatttctttcaacCACAATTTCTCCAAGAAGTAAAAATGCA
TCTTTTTCTCAGACTACAAAAGTTATAATTGGACTCAGTGTGGGTGCATT
ATTTCTCGTTggaattttcgcatattttgGTCATAAGTGGAAAGCACGAC
GTTCAGTGACAAATAAGCTTGCAGATACGTATATTCTTACAGATTTTGAT
TATTTGAATGACATCTCCTCAATTGATGGATAAAATCGAAATCAATCTAA
AGTTTCTACGTACAACATACCTTCAAGGGAACTTTTTTTtgc Run BLAST on NCBI protein sequence of TCONS_00070298-protein >TCONS_00070298-protein ID=TCONS_00070298-protein|Name=TCONS_00070298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=776bp
FPRLVFLELSNNPIRNIPAFAFKGIPSLKELVITTDTIVESSFDGLELES
LTLIGVKMETLPARFLDSSRDTLKALTVQNTEIEKLDILKFDFPNLETLI
LTGNRLTTFVFDGKTPNLKDVTLSKNKFKQIQCIQPLQNVTYLDVSYNQL
RNLTEDFSRCFSNLTDVKLQNNALSTLPIGFFSSLQNTLQSIDLSHNPWT
TLSTNELGLMLKLKELRLQNMGSIDIDLSPMENWEKAVAEKGLILDLSYN
TKLKSYQIPRNIKLDKLIFTNSELKTFPILNHKHGDIVHIEIQMNNLEKL
IIARPVAHLNASHNKIRFINISYEWTKIDILDVGHNLIESTRNIHIYPNT
YLKYVNLTFNKLKQINPFYQAPPDIRGKYGYKISPIRMDFSYNSISSINR
SAFFGLQPMVSLKLNNNNITSLPDDLLLQQPHLNKLDLNHNKLQQVPTEL
LRTIKLLSYLLLKDNQINQILPSDLQGLFRLLSLDLSSNYHLSKLPSNFL
SRNKRLRRFSIFNTSVVCTCNLTTIFKNIIMTNKRLKYDGHCLDESTSHL
QHLKTIVETSEANPWLCDTDCPILKCILHNECTQRINTSMSFNCSCQTLN
NNTDSNTIFNFPIFNNPPWIAPAKEPPFSRNLIFCQTTSCFSDTDLLSRN
GTNNSTRRTDPSFRHPESKCRWSLNKESNLQTGILVECSRIPLLTEIFCK
PFEFLSTTISPRSKNASFSQTTKVIIGLSVGALFLVGIFAYFGHKWKARR
SVTNKLADTYILTDFDYLNDISSIDG Run BLAST on NCBI transcript from alignment at scaffold_52:145310..147760+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070298 ID=TCONS_00070298|Name=TCONS_00070298|organism=Clytia hemisphaerica|type=transcript|length=2451bp|location=Sequence derived from alignment at scaffold_52:145310..147760+ (Clytia hemisphaerica)
CATTTCCCCGATTGGTATTCTTGGAACTTTCAAATAACCCGATTCGGAAC
ATACCAGCTTTCGCGTTCAAAGGGATACCATCGTTAAAGGAACTCGTCAT
TACGACAGATACGATAGTTGAATCTTCATTTGACGGATTGGAACTAGAAT
CGTTGACGTTAATTGGAGTTAAAATGGAAACCTTGCCGGCAAGATTTCTA
GATTCAAGCCGCGACACGTTGAAAGCTCTTACGGTACAAAACACAGAAAT
TGAGAAATTGGACATTTTGAAATTCGATTTTCCAAACTTGGAGACATTGA
TTTTGACAGGAAATCGTTTGACAACTTTTGTGTTTGACGGTAAGACACCA
AACCTCAAAGATGTCACtttgtcaaaaaataagtttaaaCAGATCCAATG
CATACAACCTCTTCAAAATGTCACATATCTTGATGTCAGCTATAATCAGC
TGAGAAATTTAACAGAAGATTTTTCCCGATGTTTTTCGAATTTGACAGAT
GTGAAATTGCAAAATAACGCCTTATCTACACTCCCAATAGGCTTTTTCTC
CAGCCTACAAAACACACTTCAATCGATCGACTTAAGTCATAACCCTTGGA
CAACTCTCTCAACAAACGAACTTGGGCTAATGTTAAAATTGAAAGAACTC
AGGCTACAAAATATGGGTTCGATAGACATAGACCTTTCTCCAATGGAGAA
TTGGGAAAAAGCCGTGGCAGAAAAAGGTCTTATCTTAGATCTTTCTTATA
ACACTAAATTGAAGAGTTATCAAATTCCACGAAACATAAAACTTGACAAA
CTTATTTTCACCAACAGCGAATTGAAAACATTCCCAATCTTAAACCACAA
ACATGGTGATATAGTTCACATTGAAATTCAAATGAACAACCTAGAGAAAC
TCATCATCGCTCGACCTGTCGCACATTTGAATGCTTCACACAACAAAATA
CGTTTCATCAATATCTCATATGAATGGACCAAGATTGATATTCTGGATGT
TGGTCATAACTTGATCGAAAGCACACGGAACATACACATTTATCCGAACA
CATATCTAAAATACGTCAATTTAACTTTCAATAAACTAAAACAGATCAAT
CCTTTCTATCAAGCACCGCCAGACATACGAGGGAAATATGGCTACAAGAT
CAGCCCCATACGCATGGATTTTTCGTATAATTCGATCAGTTCCATTAATC
GTTCCGCATTCTTTGGTCTTCAACCGATGGTCTCTTTAAAACTTAATAAC
AACAACATCACCAGTCTACCAGATGATCTCTNCCGATGGTCTCTTTAAAA
CTTAATAACAACAACATAACCAGTCTACCAGATGATCTCTTACTGCAACA
GCCTCACTTGAATAAGCTTGACCTCAATCATAATAAACTACAACAAGTAC
CGACTGAATTACTACGAACCATCAAACTTCTCTCCTACCTCCTACTCAAA
GATAACCAAATCAATCAAATCTTACCTTCAGATTTACAAGGTTTGTTCAG
GCTTCTCTCACTGGATTTATCGTCTAATTACCATCTTTCAAAACTGCCTT
CCAATTTTTTATCCAGGAATAAGCGTCTTCGTCGTTTCTCTATTTTCAAT
ACGTCAGTCGTCTGCACCTGTAACTTAACCACAATCTTCAAGAACATCAT
AATGACAAATAAAAGACTAAAATATGATGGACATTGTCTTGATGAGTCAA
CATCTCATTTACAACATTTAAAGACAATAGTTGAAACAAGCGAGGCAAAT
CCTTGGCTTTGCGATACAGATTGTCCAATTTTGAAATGCATTTTACACAA
CGAATGCACTCAACGAATCAATACTTCCATGAGTTTCAACTGTTCGTGTC
AAACTCTTAATAACAACACTGACTCAAATACAATCTTCAATTTTCCAATC
TTTAATAACCCTCCTTGGATCGCACCGGCTAAAGAACCACCGTTTTCTAG
AAACTTAATTTTCTGTCAAACGACGTCTTGCTTCAGTGATACCGATCTTT
TATCAAGAAATGGGACAAATAATTCTACAAGAAGGACTGACCCCTCATTT
AGACACCCAGAATCGAAATGTAGATGGAGCCTAAACAAAgaaagtaattt
acagaccggaattCTTGTCGAATGTTCAAGGATTCCtttattaactgaaa
tattttgtaaaccttttgaatttctttcaacCACAATTTCTCCAAGAAGT
AAAAATGCATCTTTTTCTCAGACTACAAAAGTTATAATTGGACTCAGTGT
GGGTGCATTATTTCTCGTTggaattttcgcatattttgGTCATAAGTGGA
AAGCACGACGTTCAGTGACAAATAAGCTTGCAGATACGTATATTCTTACA
GATTTTGATTATTTGAATGACATCTCCTCAATTGATGGATAAAATCGAAA
TCAATCTAAAGTTTCTACGTACAACATACCTTCAAGGGAACTTTTTTTtg
c Coding sequence (CDS) from alignment at scaffold_52:145310..147760+ >TCONS_00070298 ID=TCONS_00070298|Name=TCONS_00070298|organism=Clytia hemisphaerica|type=CDS|length=4662bp|location=Sequence derived from alignment at scaffold_52:145310..147760+ (Clytia hemisphaerica)
TTTCCCCGATTGGTATTCTTGGAACTTTCAAATAACCCGATTCGGAACAT
ACCAGCTTTCGCGTTCAAAGGGATACCATCGTTAAAGGAACTCGTCATTA
CGACAGATACGATAGTTGAATCTTCATTTGACGGATTGGAACTAGAATCG
TTGACGTTAATTGGAGTTAAAATGGAAACCTTGCCGGCAAGATTTCTAGA
TTCAAGCCGCGACACGTTGAAAGCTCTTACGGTACAAAACACAGAAATTG
AGAAATTGGACATTTTGAAATTCGATTTTCCAAACTTGGAGACATTGATT
TTGACAGGAAATCGTTTGACAACTTTTGTGTTTGACGGTAAGACACCAAA
CCTCAAAGATGTCACtttgtcaaaaaataagtttaaaCAGATCCAATGCA
TACAACCTCTTCAAAATGTCACATATCTTGATGTCAGCTATAATCAGCTG
AGAAATTTAACAGAAGATTTTTCCCGATGTTTTTCGAATTTGACAGATGT
GAAATTGCAAAATAACGCCTTATCTACACTCCCAATAGGCTTTTTCTCCA
GCCTACAAAACACACTTCAATCGATCGACTTAAGTCATAACCCTTGGACA
ACTCTCTCAACAAACGAACTTGGGCTAATGTTAAAATTGAAAGAACTCAG
GCTACAAAATATGGGTTCGATAGACATAGACCTTTCTCCAATGGAGAATT
GGGAAAAAGCCGTGGCAGAAAAAGGTCTTATCTTAGATCTTTCTTATAAC
ACTAAATTGAAGAGTTATCAAATTCCACGAAACATAAAACTTGACAAACT
TATTTTCACCAACAGCGAATTGAAAACATTCCCAATCTTAAACCACAAAC
ATGGTGATATAGTTCACATTGAAATTCAAATGAACAACCTAGAGAAACTC
ATCATCGCTCGACCTGTCGCACATTTGAATGCTTCACACAACAAAATACG
TTTCATCAATATCTCATATGAATGGACCAAGATTGATATTCTGGATGTTG
GTCATAACTTGATCGAAAGCACACGGAACATACACATTTATCCGAACACA
TATCTAAAATACGTCAATTTAACTTTCAATAAACTAAAACAGATCAATCC
TTTCTATCAAGCACCGCCAGACATACGAGGGAAATATGGCTACAAGATCA
GCCCCATACGCATGGATTTTTCGTATAATTCGATCAGTTCCATTAATCGT
TCCGCATTCTTTGGTCTTCAACCGATGGTCTCTTTAAAACTTAATAACAA
CAACATAACCAGTCTACCAGATGATCTCTTACTGCAACAGCCTCACTTGA
ATAAGCTTGACCTCAATCATAATAAACTACAACAAGTACCGACTGAATTA
CTACGAACCATCAAACTTCTCTCCTACCTCCTACTCAAAGATAACCAAAT
CAATCAAATCTTACCTTCAGATTTACAAGGTTTGTTCAGGCTTCTCTCAC
TGGATTTATCGTCTAATTACCATCTTTCAAAACTGCCTTCCAATTTTTTA
TCCAGGAATAAGCGTCTTCGTCGTTTCTCTATTTTCAATACGTCAGTCGT
CTGCACCTGTAACTTAACCACAATCTTCAAGAACATCATAATGACAAATA
AAAGACTAAAATATGATGGACATTGTCTTGATGAGTCAACATCTCATTTA
CAACATTTAAAGACAATAGTTGAAACAAGCGAGGCAAATCCTTGGCTTTG
CGATACAGATTGTCCAATTTTGAAATGCATTTTACACAACGAATGCACTC
AACGAATCAATACTTCCATGAGTTTCAACTGTTCGTGTCAAACTCTTAAT
AACAACACTGACTCAAATACAATCTTCAATTTTCCAATCTTTAATAACCC
TCCTTGGATCGCACCGGCTAAAGAACCACCGTTTTCTAGAAACTTAATTT
TCTGTCAAACGACGTCTTGCTTCAGTGATACCGATCTTTTATCAAGAAAT
GGGACAAATAATTCTACAAGAAGGACTGACCCCTCATTTAGACACCCAGA
ATCGAAATGTAGATGGAGCCTAAACAAAgaaagtaatttacagaccggaa
ttCTTGTCGAATGTTCAAGGATTCCtttattaactgaaatattttgtaaa
ccttttgaatttctttcaacCACAATTTCTCCAAGAAGTAAAAATGCATC
TTTTTCTCAGACTACAAAAGTTATAATTGGACTCAGTGTGGGTGCATTAT
TTCTCGTTggaattttcgcatattttgGTCATAAGTGGAAAGCACGACGT
TCAGTGACAAATAAGCTTGCAGATACGTATATTCTTACAGATTTTGATTA
TTTGAATGACATCTCCTCAATTGATGGATAATTTCCCCGATTGGTATTCT
TGGAACTTTCAAATAACCCGATTCGGAACATACCAGCTTTCGCGTTCAAA
GGGATACCATCGTTAAAGGAACTCGTCATTACGACAGATACGATAGTTGA
ATCTTCATTTGACGGATTGGAACTAGAATCGTTGACGTTAATTGGAGTTA
AAATGGAAACCTTGCCGGCAAGATTTCTAGATTCAAGCCGCGACACGTTG
AAAGCTCTTACGGTACAAAACACAGAAATTGAGAAATTGGACATTTTGAA
ATTCGATTTTCCAAACTTGGAGACATTGATTTTGACAGGAAATCGTTTGA
CAACTTTTGTGTTTGACGGTAAGACACCAAACCTCAAAGATGTCACtttg
tcaaaaaataagtttaaaCAGATCCAATGCATACAACCTCTTCAAAATGT
CACATATCTTGATGTCAGCTATAATCAGCTGAGAAATTTAACAGAAGATT
TTTCCCGATGTTTTTCGAATTTGACAGATGTGAAATTGCAAAATAACGCC
TTATCTACACTCCCAATAGGCTTTTTCTCCAGCCTACAAAACACACTTCA
ATCGATCGACTTAAGTCATAACCCTTGGACAACTCTCTCAACAAACGAAC
TTGGGCTAATGTTAAAATTGAAAGAACTCAGGCTACAAAATATGGGTTCG
ATAGACATAGACCTTTCTCCAATGGAGAATTGGGAAAAAGCCGTGGCAGA
AAAAGGTCTTATCTTAGATCTTTCTTATAACACTAAATTGAAGAGTTATC
AAATTCCACGAAACATAAAACTTGACAAACTTATTTTCACCAACAGCGAA
TTGAAAACATTCCCAATCTTAAACCACAAACATGGTGATATAGTTCACAT
TGAAATTCAAATGAACAACCTAGAGAAACTCATCATCGCTCGACCTGTCG
CACATTTGAATGCTTCACACAACAAAATACGTTTCATCAATATCTCATAT
GAATGGACCAAGATTGATATTCTGGATGTTGGTCATAACTTGATCGAAAG
CACACGGAACATACACATTTATCCGAACACATATCTAAAATACGTCAATT
TAACTTTCAATAAACTAAAACAGATCAATCCTTTCTATCAAGCACCGCCA
GACATACGAGGGAAATATGGCTACAAGATCAGCCCCATACGCATGGATTT
TTCGTATAATTCGATCAGTTCCATTAATCGTTCCGCATTCTTTGGTCTTC
AACCGATGGTCTCTTTAAAACTTAATAACAACAACATAACCAGTCTACCA
GATGATCTCTTACTGCAACAGCCTCACTTGAATAAGCTTGACCTCAATCA
TAATAAACTACAACAAGTACCGACTGAATTACTACGAACCATCAAACTTC
TCTCCTACCTCCTACTCAAAGATAACCAAATCAATCAAATCTTACCTTCA
GATTTACAAGGTTTGTTCAGGCTTCTCTCACTGGATTTATCGTCTAATTA
CCATCTTTCAAAACTGCCTTCCAATTTTTTATCCAGGAATAAGCGTCTTC
GTCGTTTCTCTATTTTCAATACGTCAGTCGTCTGCACCTGTAACTTAACC
ACAATCTTCAAGAACATCATAATGACAAATAAAAGACTAAAATATGATGG
ACATTGTCTTGATGAGTCAACATCTCATTTACAACATTTAAAGACAATAG
TTGAAACAAGCGAGGCAAATCCTTGGCTTTGCGATACAGATTGTCCAATT
TTGAAATGCATTTTACACAACGAATGCACTCAACGAATCAATACTTCCAT
GAGTTTCAACTGTTCGTGTCAAACTCTTAATAACAACACTGACTCAAATA
CAATCTTCAATTTTCCAATCTTTAATAACCCTCCTTGGATCGCACCGGCT
AAAGAACCACCGTTTTCTAGAAACTTAATTTTCTGTCAAACGACGTCTTG
CTTCAGTGATACCGATCTTTTATCAAGAAATGGGACAAATAATTCTACAA
GAAGGACTGACCCCTCATTTAGACACCCAGAATCGAAATGTAGATGGAGC
CTAAACAAAgaaagtaatttacagaccggaattCTTGTCGAATGTTCAAG
GATTCCtttattaactgaaatattttgtaaaccttttgaatttctttcaa
cCACAATTTCTCCAAGAAGTAAAAATGCATCTTTTTCTCAGACTACAAAA
GTTATAATTGGACTCAGTGTGGGTGCATTATTTCTCGTTggaattttcgc
atattttgGTCATAAGTGGAAAGCACGACGTTCAGTGACAAATAAGCTTG
CAGATACGTATATTCTTACAGATTTTGATTATTTGAATGACATCTCCTCA
ATTGATGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070298-exon-scaffold_52-1491911889:145310..146565 | TCONS_00070298-exon-scaffold_52-1491911889:145310..146565 | Clytia hemisphaerica | exon |
| TCONS_00070298-exon-scaffold_52-1510915933:145310..146565 | TCONS_00070298-exon-scaffold_52-1510915933:145310..146565 | Clytia hemisphaerica | exon |
| TCONS_00070298-exon-scaffold_52-1575043694:145310..146565 | TCONS_00070298-exon-scaffold_52-1575043694:145310..146565 | Clytia hemisphaerica | exon |
| TCONS_00070298-exon-scaffold_52-1491911889:146625..147760 | TCONS_00070298-exon-scaffold_52-1491911889:146625..147760 | Clytia hemisphaerica | exon |
| TCONS_00070298-exon-scaffold_52-1510915933:146625..147760 | TCONS_00070298-exon-scaffold_52-1510915933:146625..147760 | Clytia hemisphaerica | exon |
| TCONS_00070298-exon-scaffold_52-1575043694:146625..147760 | TCONS_00070298-exon-scaffold_52-1575043694:146625..147760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:145310..147760 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
