TCONS_00071470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071470
Unique NameTCONS_00071470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071470 ID=TCONS_00071470|Name=TCONS_00071470|organism=Clytia hemisphaerica|type=transcript|length=498bp
TGCTTCAGCTCTTGATAAAGTCGAAGATGAATTGGCGGGAGTCATGAAAG
AGATCGATGATGCGCCGAATCTCTCAGATGAAAATAAAGCGCCGTTACTT
GAAAAACTGACTACATTAGCTCAATTACACGCTGACATCAAGGAGAAATG
GGATACTTGTAAAGATAGCTTTCTGATCAAATTGGACCAGCACGCGGGTA
AAGAAATGGCTCTTTCGAATCTATCTACACATTtggaaaaatgtgaaaaa
cagTTACAATTACTGAACAATAAAGAAGTACCAGAACTTTATCTTCTACA
AGAAAATAGAGCTGTTATGGAGGCACAACACAAGGAAATGCAAGACTCAC
TAGACGTAATCGAAGAAGACTTATCTAAAGTTATGCAAGCTCTCGATGAC
CCAAATCTAACAGATGAAGATAAAGCACCATTACTTGAAAAACTAACCGT
TTTAGTTCAATTGCATGCTGATATCAAAGAAAAATGGGATACTTGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_60:1542632..1545525-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071470 ID=TCONS_00071470|Name=TCONS_00071470|organism=Clytia hemisphaerica|type=transcript|length=2894bp|location=Sequence derived from alignment at scaffold_60:1542632..1545525- (Clytia hemisphaerica)
TGCTTCAGCTCTTGATAAAGTCGAAGATGAATTGGCGGGAGTCATGAAAG
AGATCGATGATGCGCCGAATCTCTCAGATGAAAATAAAGCGCCGTTACTT
GAAAAACTGACTACATTAGTTCAATTGCATGCTGACATCAAGGAGAAATG
GGACACTTGTAAACACAGGTATATATCTAGCTTGTCCTCTTATGACAGCT
TGATATTTTTTGCGAAGCGAATTTATGAGCGAAGCAGTTTTGCTATATTG
TGCACGTACCTTTAACTTCTATCCCAAGCGAAAATTTGCTATAAAATTTG
CTATATAAATCACATCTACAAACCGATGATTTTATCAAAATGACCTTGAA
TGGTTTGGCTTGAAGCCACGAAAACCTTCTTGGTTTGGTAGCTAGAACTG
CGAAAAAGGCAGATGAGATGGAGTTTTTATAAGATACTATAATAATTGGT
CATTTGATGTAATAAAAATGCACGTTCTTTAGAAAAAGTAAGAAAATTGT
TTTATTACTGGTTAACAACCAACCAAATCAAATAAGAGCTTGTAAAAACT
CCATCTCGTCCCGAAAAAGGCCGTTTTAAAATGGTGTACCCTAGCAGTGA
ACAGCAACAAAATTACCAAGTTACCGCGCGTGCGACACGCATCTAAGCAA
TCTAAGCAGTGGTTCTTCGGTTTTAAATGTTTATTTTGCTGTTAAATGGA
AAAAAATTAGTTTGAACGTTGACAGAAAGGATCTTCATCATCCCTTGACT
TTTAACAGCAAGTATCAAGTATCTAATAAGGTCAATTAATGAGAGATTTT
TGCAAGTCGGGCGCGAGGAGTGCTCTTCTAGTGAACGAAACTTACCTTGC
AAAACCAAGTGGATATTCTATGATAAAGAAGTACGGAGGCAAGCGGAGGT
AATCGAATTTGTCGAATTTGTCAAGAAATAAATCAAAACTACCCAAGAAC
CAACAAGCCATCTTTGTACATTTTTGTTTTTGTTTTATTTTTATCTTTTG
GACGATTCGTGATTCGAATAAAAATGTTCGATCGTTCAACGAATATCGTT
CGATTTTATTAAGGCACCATTTACACTAGAATAACTAGTAGGAAAAAAAG
AGCGATGCGCGGCGGATGGCGGCGGGTGTTGTGCTGCCGTAGATTATGTG
GTGTGTTTGGGGCATTAAGGCTCTTACGACCCTGGCTCTATAGAATAGCG
GCTTTATTAGAGTGATTTTTAGAGTGTCTCTTATTTTGCTAGCAACTTGC
GAGTTAAGGTGGAGTCTGGATCGCTTCGCAACCCTTATACAATACGGCTA
GTTCAAGGCTTTCTTTTACCCCATCTAAAATCGAAATCAAAAAAAATTTG
AAAGTGCAATCCTTGTCTGACTGAAGTCGGCTATTCATCGGTTGCTTGCT
TGCTTTATCTATCCAGAAGTAATTTTGACACTGTTAAAATACTACAATGT
TTTTTATATTTGACTTTGTTTTCAGCTTTTTGATCAAACTTAATCAACAC
ATGGGGAAAGAAACAGCCCTTTCTAAACTATCCACACAACTAGGAGAATG
CGAAAAACAGTTGAACGTTTTAAACAGCAAAGAAGTTCCCGAATTATACC
TTTTCCCAGAAAGCAGGGCTGTCATGGAGGCACAACACAAGGTAGGCGGT
AATACAATTTTTGTTAGGTTGCACTTTGATGCAATTCGAGCAATCACATA
CTTTTGTCAAACTCAATAAGGAGACTGAGCAAAACAATGATCATGTCAAG
TTATTCGAACCCGTTGTTGTTGTTTTAGTGGTATAAGTACTAGTCTTTCC
TATTCAAAGAAATATCACGCGAATTTTACTTTGCATTCTCAGGAAATGCA
AGACTCACTTGACCAAGTTGAATATGAACTAGCAGGAGTCATACAAGAGC
TTGATGACGTGCCAAATCTTTCTGGTGAAGATAAAGCGCCATTACTTGAA
AAACTTACCACATTAGCTCAATTACACGCTGACATCAAGGAGAAATGGGA
TACTTGTAAAGATAGGTATGGATTTATATAGTTTCATGATATTTGATATT
TGATCTGGCGAATCTTCTAACGAAATAAACTTTGACAAACTGCATTTTCT
AATCTTTTCAGCTTTCTGATCAAATTGGACCAGCACGCGGGTAAAGAAAT
GGCTCTTTCGAATCTATCTACACATTTGGAAAAATGTGAAAAACAGTTAC
AATTACTGAACAATAAAGAAGTACCAGAACTTTATCTTCTACAAGAAAAT
AGAGCTGTTATGGAGGCACAACACAAGGTAACAGGGAAGATGACATCTAA
ATACAGCATGCTATAAAAATGAAGTTTGCTTTAAAATCTCACCCCATCAT
GTCATAAAGACATGAAAACTAGGTGATCTATCCTTTGAGCCTGGTTTAGA
TTTGTTAGAACACGTAGATTCGTATCATCTTCTATGAAGATAGGTTTCGA
CTTCAAACTAGATATTTTCACTTTTTTTCATATCTGACTTTTCCTCTTGA
GATGATGATGAAGACCTTTCTCATTAAAACAGCCAGAACCTTATTCGTTT
TCATAACACTGAAAGATAAAAGCAAATTATCATCTTTTGCTCTGGATATT
CTTGACCTGATTAATTTTCTCGGACTTTCTTTATTGGCCGAAATCGTCAG
TCGGTTTCAGGTTGGTTACGCTTGCAATTAGGAAATATCACACCTATAGA
CACTGTATTTTTACCATTTGTTAATTTTAGGAAATGCAAGACTCACTAGA
CGTAATCGAAGAAGACTTATCTAAAGTTATGCAAGCTCTCGATGACCCAA
ATCTAACAGATGAAGATAAAGCACCATTACTTGAAAAACTAACCGTTTTA
GTTCAATTGCATGCTGATATCAAAGAAAAATGGGATACTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044375XLOC_044375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071470-exon-scaffold_60-1575043694:1545412..1545525TCONS_00071470-exon-scaffold_60-1575043694:1545412..1545525Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1575043694:1543511..1543564TCONS_00071470-exon-scaffold_60-1575043694:1543511..1543564Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1575043694:1543249..1543414TCONS_00071470-exon-scaffold_60-1575043694:1543249..1543414Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1575043694:1542632..1542795TCONS_00071470-exon-scaffold_60-1575043694:1542632..1542795Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1510915933:1545412..1545525TCONS_00071470-exon-scaffold_60-1510915933:1545412..1545525Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1510915933:1543511..1543564TCONS_00071470-exon-scaffold_60-1510915933:1543511..1543564Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1510915933:1543249..1543414TCONS_00071470-exon-scaffold_60-1510915933:1543249..1543414Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1510915933:1542632..1542795TCONS_00071470-exon-scaffold_60-1510915933:1542632..1542795Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1491911889:1545412..1545525TCONS_00071470-exon-scaffold_60-1491911889:1545412..1545525Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1491911889:1543511..1543564TCONS_00071470-exon-scaffold_60-1491911889:1543511..1543564Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1491911889:1543249..1543414TCONS_00071470-exon-scaffold_60-1491911889:1543249..1543414Clytia hemisphaericaexon
TCONS_00071470-exon-scaffold_60-1491911889:1542632..1542795TCONS_00071470-exon-scaffold_60-1491911889:1542632..1542795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1542632..1545525 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83385	0.439167	2.10923	4.79327	1.64678	0	2.13483	0	4.54276	3.6798	1.634	1.25962	1.80233	3.20561	1.33878	2.74578	4.77372	2.13453	0	5.85661	7.83383	8.37532	3.99095	11.628	1.34577	0	3.57543	0.90663	0.916085	0.49995
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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