TCONS_00071530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071530
Unique NameTCONS_00071530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071530 ID=TCONS_00071530|Name=TCONS_00071530|organism=Clytia hemisphaerica|type=transcript|length=294bp
AGAAGTCATCATCACATGTATTCGATGTAGAAAATTGTTAAaggagaaaa
aacaaattcaataaaaataacCACAGTATTTACACCTCATTTATCACCCT
CTCCAAActtttcagcatttttacacAACTCATACTTTTGACCTTAACTC
TGACGTTATTCTCTTTTAaggtaaaataattttgaaatccaTTTCTTTTa
tctaaagtttgaaaattttgcttgaaatcgaacaTAAGCTTTCAAATTTT
TGCGATTTGGTCTTTACTGAGGTCGAAATCTGATTCATATACCA
Run BLAST on NCBI

transcript from alignment at scaffold_60:907580..907873

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071530 ID=TCONS_00071530|Name=TCONS_00071530|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at scaffold_60:907580..907873 (Clytia hemisphaerica)
TGGTATATGAATCAGATTTCGACCTCAGTAAAGACCAAATCGCAAAAATT
TGAAAGCTTAtgttcgatttcaagcaaaattttcaaactttagatAAAAG
AAAtggatttcaaaattattttacctTAAAAGAGAATAACGTCAGAGTTA
AGGTCAAAAGTATGAGTTgtgtaaaaatgctgaaaagTTTGGAGAGGGTG
ATAAATGAGGTGTAAATACTGTGgttatttttattgaatttgttttttct
cctTTAACAATTTTCTACATCGAATACATGTGATGATGACTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044431XLOC_044431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071530-exon-scaffold_60-1491911889:907580..907873TCONS_00071530-exon-scaffold_60-1491911889:907580..907873Clytia hemisphaericaexon
TCONS_00071530-exon-scaffold_60-1510915933:907580..907873TCONS_00071530-exon-scaffold_60-1510915933:907580..907873Clytia hemisphaericaexon
TCONS_00071530-exon-scaffold_60-1575043694:907580..907873TCONS_00071530-exon-scaffold_60-1575043694:907580..907873Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:907580..907873 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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