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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071542 ID=TCONS_00071542|Name=TCONS_00071542|organism=Clytia hemisphaerica|type=transcript|length=1319bp
CACGACAAATCACTTCACTTATTCATATCAAAAAACATCAAACTATAGAT
AACTCTAATTGCAAAactaagaaactgaaaaaaaggtGCGAAGATGCTTT
TGTTCTTGATTCTTTCCTTGTCATTTACCGGAAAAGGAATTGATTGCAAA
GCTTTTGATAGGATTGCTATCAATCAAAAGCCTGATGCAGAACCATATGA
AGTTGTTGAACTTGAACGATTCCCAGACCAGCGTTGTTTTAGTATTTGTC
ATTATGGAGCACTATGTGTTGCTTTACTGATCGAGAAAGTCGACAACTTG
CAATACAGATGTCACCTCTACAAACAAACCATCTATTATTTGGCTTTGAC
TCCATCAGCTCCTAGCACGGAAACCGTGTTCCACTCAATGCGTGTTTACC
GTGATTGTCTCGATCTATACAAAGCTGGAGTTCGCGTGACAGGTGTCTAC
CAAATCAATATTGATAATTTCGGTCCGACAAAAGTTCGATGTAACATGGA
TGTAGACGGGGGTGGGTGGACGGTATTTGAACATCGCTTTGACGGATCTG
TCGACTTCATTGATAGAGATTGGGTGGATTACAAGAATGGTTTCGGATCT
CCAGACGGTGAACTTTGGCTCGGAAACGAAGCATTACATTCATTGACGAC
ATCTAGCGTCCACGATTTTTACATCCACGCTGGAACTTTTCCTGGTAGCA
GTCTGCCATCGTCACAACATTCAAAATATGATGGATTCATTGTTGCCAAT
CAGGCTGATGATTATCGAATGAATGCGAATTCCAAGGTGAGTGGGATCGA
ATCGATAAAACACAATCGAGGAATGCGATTCACGACCCGTGATCGAGATA
ATGACGCGCATGGTGTTGATAATTGTGCCACCCGCATACCACGCGGTGGC
TTCTGGTATCATAATTGCGGACATTTGTTTTTCCAAGGACAATATTACGA
ACAGGAAAGTTGTGAAAATTTACAAGGAATTCATTGGAGATTTTATTATA
CAGCAACTGGAACTCAATGTTTAAAATGGGTTGAAATGATGGTCAGAAGA
CAAGTAAATATTTAAGTCAATGAGATGTCTCCCAAGGTTGcagggaaaaa
aaaattctaaaactatGTATAAATAATAAATCTGTTCTTGACACTAGGAG
CGAAAATATTTTATCTGTCCTTTTGCGTTATTTTTTGGCCCACGACGGAC
TATAAGGGCCAGCGTAAAGgagtacaaactttcgcgagcagaaactttcg
cgattttcgcgaattttggcccttttcgcgaaagtaaatgtctttaaaaa
ttctaggaagggccattcg Run BLAST on NCBI protein sequence of TCONS_00071542-protein >TCONS_00071542-protein ID=TCONS_00071542-protein|Name=TCONS_00071542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MLLFLILSLSFTGKGIDCKAFDRIAINQKPDAEPYEVVELERFPDQRCFS
ICHYGALCVALLIEKVDNLQYRCHLYKQTIYYLALTPSAPSTETVFHSMR
VYRDCLDLYKAGVRVTGVYQINIDNFGPTKVRCNMDVDGGGWTVFEHRFD
GSVDFIDRDWVDYKNGFGSPDGELWLGNEALHSLTTSSVHDFYIHAGTFP
GSSLPSSQHSKYDGFIVANQADDYRMNANSKVSGIESIKHNRGMRFTTRD
RDNDAHGVDNCATRIPRGGFWYHNCGHLFFQGQYYEQESCENLQGIHWRF
YYTATGTQCLKWVEMMVRRQVNI Run BLAST on NCBI transcript from alignment at scaffold_60:1112528..1113846 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071542 ID=TCONS_00071542|Name=TCONS_00071542|organism=Clytia hemisphaerica|type=transcript|length=1319bp|location=Sequence derived from alignment at scaffold_60:1112528..1113846 (Clytia hemisphaerica)
cgaatggcccttcctagaatttttaaagacatttactttcgcgaaaaggg
ccaaaattcgcgaaaatcgcgaaagtttctgctcgcgaaagtttgtactc
CTTTACGCTGGCCCTTATAGTCCGTCGTGGGCCAAAAAATAACGCAAAAG
GACAGATAAAATATTTTCGCTCCTAGTGTCAAGAACAGATTTATTATTTA
TACatagttttagaatttttttttccctgCAACCTTGGGAGACATCTCAT
TGACTTAAATATTTACTTGTCTTCTGACCATCATTTCAACCCATTTTAAA
CATTGAGTTCCAGTTGCTGTATAATAAAATCTCCAATGAATTCCTTGTAA
ATTTTCACAACTTTCCTGTTCGTAATATTGTCCTTGGAAAAACAAATGTC
CGCAATTATGATACCAGAAGCCACCGCGTGGTATGCGGGTGGCACAATTA
TCAACACCATGCGCGTCATTATCTCGATCACGGGTCGTGAATCGCATTCC
TCGATTGTGTTTTATCGATTCGATCCCACTCACCTTGGAATTCGCATTCA
TTCGATAATCATCAGCCTGATTGGCAACAATGAATCCATCATATTTTGAA
TGTTGTGACGATGGCAGACTGCTACCAGGAAAAGTTCCAGCGTGGATGTA
AAAATCGTGGACGCTAGATGTCGTCAATGAATGTAATGCTTCGTTTCCGA
GCCAAAGTTCACCGTCTGGAGATCCGAAACCATTCTTGTAATCCACCCAA
TCTCTATCAATGAAGTCGACAGATCCGTCAAAGCGATGTTCAAATACCGT
CCACCCACCCCCGTCTACATCCATGTTACATCGAACTTTTGTCGGACCGA
AATTATCAATATTGATTTGGTAGACACCTGTCACGCGAACTCCAGCTTTG
TATAGATCGAGACAATCACGGTAAACACGCATTGAGTGGAACACGGTTTC
CGTGCTAGGAGCTGATGGAGTCAAAGCCAAATAATAGATGGTTTGTTTGT
AGAGGTGACATCTGTATTGCAAGTTGTCGACTTTCTCGATCAGTAAAGCA
ACACATAGTGCTCCATAATGACAAATACTAAAACAACGCTGGTCTGGGAA
TCGTTCAAGTTCAACAACTTCATATGGTTCTGCATCAGGCTTTTGATTGA
TAGCAATCCTATCAAAAGCTTTGCAATCAATTCCTTTTCCGGTAAATGAC
AAGGAAAGAATCAAGAACAAAAGCATCTTCGCacctttttttcagtttct
tagtTTTGCAATTAGAGTTATCTATAGTTTGATGTTTTTTGATATGAATA
AGTGAAGTGATTTGTCGTG Coding sequence (CDS) from alignment at scaffold_60:1112528..1113846 >TCONS_00071542 ID=TCONS_00071542|Name=TCONS_00071542|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_60:1112528..1113846 (Clytia hemisphaerica)
TTAAATATTTACTTGTCTTCTGACCATCATTTCAACCCATTTTAAACATT
GAGTTCCAGTTGCTGTATAATAAAATCTCCAATGAATTCCTTGTAAATTT
TCACAACTTTCCTGTTCGTAATATTGTCCTTGGAAAAACAAATGTCCGCA
ATTATGATACCAGAAGCCACCGCGTGGTATGCGGGTGGCACAATTATCAA
CACCATGCGCGTCATTATCTCGATCACGGGTCGTGAATCGCATTCCTCGA
TTGTGTTTTATCGATTCGATCCCACTCACCTTGGAATTCGCATTCATTCG
ATAATCATCAGCCTGATTGGCAACAATGAATCCATCATATTTTGAATGTT
GTGACGATGGCAGACTGCTACCAGGAAAAGTTCCAGCGTGGATGTAAAAA
TCGTGGACGCTAGATGTCGTCAATGAATGTAATGCTTCGTTTCCGAGCCA
AAGTTCACCGTCTGGAGATCCGAAACCATTCTTGTAATCCACCCAATCTC
TATCAATGAAGTCGACAGATCCGTCAAAGCGATGTTCAAATACCGTCCAC
CCACCCCCGTCTACATCCATGTTACATCGAACTTTTGTCGGACCGAAATT
ATCAATATTGATTTGGTAGACACCTGTCACGCGAACTCCAGCTTTGTATA
GATCGAGACAATCACGGTAAACACGCATTGAGTGGAACACGGTTTCCGTG
CTAGGAGCTGATGGAGTCAAAGCCAAATAATAGATGGTTTGTTTGTAGAG
GTGACATCTGTATTGCAAGTTGTCGACTTTCTCGATCAGTAAAGCAACAC
ATAGTGCTCCATAATGACAAATACTAAAACAACGCTGGTCTGGGAATCGT
TCAAGTTCAACAACTTCATATGGTTCTGCATCAGGCTTTTGATTGATAGC
AATCCTATCAAAAGCTTTGCAATCAATTCCTTTTCCGGTAAATGACAAGG
AAAGAATCAAGAACAAAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071542-exon-scaffold_60-1491911889:1112528..1113846 | TCONS_00071542-exon-scaffold_60-1491911889:1112528..1113846 | Clytia hemisphaerica | exon |
| TCONS_00071542-exon-scaffold_60-1510915933:1112528..1113846 | TCONS_00071542-exon-scaffold_60-1510915933:1112528..1113846 | Clytia hemisphaerica | exon |
| TCONS_00071542-exon-scaffold_60-1575043694:1112528..1113846 | TCONS_00071542-exon-scaffold_60-1575043694:1112528..1113846 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1112528..1113846 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00071542 vs. Swiss-Prot (Human)
Match: ANGP1 (Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 7.232e-38 Identity = 84/226 (37.17%), Postives = 128/226 (56.64%), Query Frame = 1
Query: 391 RVYRDCLDLYKAGVRVTGVYQINIDNF-GPTKVRCNMDVDGGGWTVFEHRFDGSVDFIDRDWVDYKNGFGSPDGELWLGNEALHSLTTSSVHDFYIHAGTFPGSSLPSSQHSKYDGFIVANQADDYR--MNANSKVSGIESIKHNRGMRFTTRDRDNDAHGVDNCATR---IPRGGFWYHNCGHLFFQGQYYEQ-ESCENLQGIHWRFYYTATGTQCLKWVEMMVR 1047
+ +RDC D+Y+AG +G+Y I I+N P KV CNMDV+GGGWTV +HR DGS+DF R W +YK GFG+P GE WLGNE + ++T+ + I + G+ +S+YD F + N+ +YR + ++ +G +S G F+T+D DN DNC + + GG+W+ CG G +Y ++ L GI W ++ + + L+ MM+R
Sbjct: 281 KPFRDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDVNGGGWTVIQHREDGSLDF-QRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYMLRIELMDWEGNRA----YSQYDRFHIGNEKQNYRLYLKGHTGTAGKQSSLILHGADFSTKDADN-----DNCMCKCALMLTGGWWFDACGPSNLNGMFYTAGQNHGKLNGIKWHYFKGPSYS--LRSTTMMIR 494
The following BLAST results are available for this feature:
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