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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071604 ID=TCONS_00071604|Name=TCONS_00071604|organism=Clytia hemisphaerica|type=transcript|length=2001bp
tcttataaaagcactgcttagaaaagaaatattaattgattatttattca
atgtgcacagtgatgacgttcgatgatcaaggattcaattcagtgaaaat
tgttatagcacctttctataagatcttcatttttttcttcttcattttta
tcttcatttttagaattttttaaagattattttatttcaaattgtttcag
tcactaatatctttccaacgataccaaatttaaaaatattaaagcaattc
tttaaaagttataggtaaaagaaaaaagagtgcacacttatcgtgaacag
actttaattaAAATAGTTAAGCTACAAATATATTCATCTGATAATGTTTT
TTTAGGGCAACCAATTGGTTAGTAGAATCTGCAGACGCACCAAAAATAAT
AAGTTACCTCGACAACCAAAACTATAAAAATCTTAAAGTAAAGGTAATCT
GACTTTATTTGTCACCCTTTCAATTTCGTCTACAGATAGAACAGGTGACA
AAAACAAACAAGTCTTGACTTTTTTCAAGGTTTGAGGGTGTATATGCTTT
TAAGCGCTGCGTATTGTTCAacggttttctttttttctttcttttctatt
GACTACGATAATTTTAATGCAATGacagatttataaaaaaatagcaTGGA
TTTAAGCAAAGGAATAATAAGAATCATGTCTGTTGGGCCAACAGGTGTTG
GCAAATCAACAATTGGAAACAAGCTTCTTGGCCTATCGCATAATGACTTT
CGATACTTGAAAGCAGAAGCATCATCGATGAGTTGTACTCAAGTTCCTGT
GACAGTTCAAAAAGGGAATGTTATGTACACTGATGTACCTGGGTTGCCAG
ACACTAATCCAGATAAAACAAAGATCGTTTATGATGTTATCATAGAAGAA
GCTAAAAAACCACTCACTgctattttctttgtttttgcgGTCGATATGAG
AATGGATAAAGCAACGAAAGATCGGATTAGGAATTGTTCATTGCTTTTCA
ATGAAATCAATAGATGCTCTGCTGCTAAGATCCTGATTCTAAACGACATA
AGATCTTGGAGCAATCCAAATTGCTTAGAGGAGAAAAGTGAGGAATACAA
GACAGAAAAAGCCATATATGACCAAGTTCGTCTTGACACACAAAAACACT
ACGAACAAGATATTAAGAATTCCACGGGAATCGAGTTTTATTGCACCAAA
GTCATCTATGGTATTAACAAAAAGATAAATCCAGATAATAACATGAATGC
AGTCTTGCATTACCTGGAATTGACTCTTCAGAGCTTCCCTTGTGAAGCAT
CACCACATTTACGTAATTTCAAAATGTTGGAAAAAGTTGTGACAAGTGCG
AGGGAAAATTGTGATTTTGAGCAACAGTTAATTGACGATCAAGAGAAAAT
GattaaaagtttagaaaaatcaatttccacTTTAAAAGTTACAGAAGGAG
TTGCTATAGCTGCTACAGGCGCAGTTGCTGTAACAGCTGTAGTTACAGCT
TTTTTTACTGCTGGTGTTTCATTAGTGATTGGAGGTGTCGCTGCTGGTGC
TGCTGGTGTTGCAAAATTGACTATAGGGTCGACGAAAATAGCAATTGCTT
TGAAGGAAAAAGAGTTGAAAAGTgcgaaagaaaaattgaacaaGGACAAc
ctgaaaaaatatatttctgaATATAAAGAACAATGTAAATTATTTGAAGA
TTTAAAAGCAGCTCTTAATGAACGATAATATAATTTCACTAGATACACAG
GATAATAAAGTTCGAGTATTGACAACGCACGACAATGAGTCAAATACAAc
tttaaattatgtttttttaatttttttgaaaaaagaacgaGGATTGATTA
CAAAAGGATTtattcaatgttttgaaaaaaaatacaaacttttttttatg
agaatagtgtactttggatgagggtcaagtaagTGCCACAATTGAGGgcg
aaatattcttaacgttttcttactttttcagactttactttttttacaaa
c Run BLAST on NCBI transcript from alignment at scaffold_62:157548..159548- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071604 ID=TCONS_00071604|Name=TCONS_00071604|organism=Clytia hemisphaerica|type=transcript|length=2001bp|location=Sequence derived from alignment at scaffold_62:157548..159548- (Clytia hemisphaerica)
TCTTATAAAAGCACTGCTTAGAAAAGAAATATTAATTGATTATTTATTCA
ATGTGCACAGTGATGACGTTCGATGATCAAGGATTCAATTCAGTGAAAAT
TGTTATAGCACCTTTCTATAAGATCTTCATTTTTTTCTTCTTCATTTTTA
TCTTCATTTTTAGAATTTTTTAAAGATTATTTTATTTCAAATTGTTTCAG
TCACTAATATCTTTCCAACGATACCAAATTTAAAAATATTAAAGCAATTC
TTTAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAACAG
ACTTTAATTAAAATAGTTAAGCTACAAATATATTCATCTGATAATGTTTT
TTTAGGGCAACCAATTGGTTAGTAGAATCTGCAGACGCACCAAAAATAAT
AAGTTACCTCGACAACCAAAACTATAAAAATCTTAAAGTAAAGGTAATCT
GACTTTATTTGTCACCCTTTCAATTTCGTCTACAGATAGAACAGGTGACA
AAAACAAACAAGTCTTGACTTTTTTCAAGGTTTGAGGGTGTATATGCTTT
TAAGCGCTGCGTATTGTTCAACGGTTTTCTTTTTTTCTTTCTTTTCTATT
GACTACGATAATTTTAATGCAATGACAGATTTATAAAAAAATAGCATGGA
TTTAAGCAAAGGAATAATAAGAATCATGTCTGTTGGGCCAACAGGTGTTG
GCAAATCAACAATTGGAAACAAGCTTCTTGGCCTATCGCATAATGACTTT
CGATACTTGAAAGCAGAAGCATCATCGATGAGTTGTACTCAAGTTCCTGT
GACAGTTCAAAAAGGGAATGTTATGTACACTGATGTACCTGGGTTGCCAG
ACACTAATCCAGATAAAACAAAGATCGTTTATGATGTTATCATAGAAGAA
GCTAAAAAACCACTCACTGCTATTTTCTTTGTTTTTGCGGTCGATATGAG
AATGGATAAAGCAACGAAAGATCGGATTAGGAATTGTTCATTGCTTTTCA
ATGAAATCAATAGATGCTCTGCTGCTAAGATCCTGATTCTAAACGACATA
AGATCTTGGAGCAATCCAAATTGCTTAGAGGAGAAAAGTGAGGAATACAA
GACAGAAAAAGCCATATATGACCAAGTTCGTCTTGACACACAAAAACACT
ACGAACAAGATATTAAGAATTCCACGGGAATCGAGTTTTATTGCACCAAA
GTCATCTATGGTATTAACAAAAAGATAAATCCAGATAATAACATGAATGC
AGTCTTGCATTACCTGGAATTGACTCTTCAGAGCTTCCCTTGTGAAGCAT
CACCACATTTACGTAATTTCAAAATGTTGGAAAAAGTTGTGACAAGTGCG
AGGGAAAATTGTGATTTTGAGCAACAGTTAATTGACGATCAAGAGAAAAT
GATTAAAAGTTTAGAAAAATCAATTTCCACTTTAAAAGTTACAGAAGGAG
TTGCTATAGCTGCTACAGGCGCAGTTGCTGTAACAGCTGTAGTTACAGCT
TTTTTTACTGCTGGTGTTTCATTAGTGATTGGAGGTGTCGCTGCTGGTGC
TGCTGGTGTTGCAAAATTGACTATAGGGTCGACGAAAATAGCAATTGCTT
TGAAGGAAAAAGAGTTGAAAAGTGCGAAAGAAAAATTGAACAAGGACAAC
CTGAAAAAATATATTTCTGAATATAAAGAACAATGTAAATTATTTGAAGA
TTTAAAAGCAGCTCTTAATGAACGATAATATAATTTCACTAGATACACAG
GATAATAAAGTTCGAGTATTGACAACGCACGACAATGAGTCAAATACAAC
TTTAAATTATGTTTTTTTAATTTTTTTGAAAAAAGAACGAGGATTGATTA
CAAAAGGATTTATTCAATGTTTTGAAAAAAAATACAAACTTTTTTTTATG
AGAATAGTGTACTTTGGATGAGGGTCAAGTAAGTGCCACAATTGAGGGCG
AAATATTCTTAACGTTTTCTTACTTTTTCAGACTTTACTTTTTTTACAAA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071604-exon-scaffold_62-1575043694:157548..159548 | TCONS_00071604-exon-scaffold_62-1575043694:157548..159548 | Clytia hemisphaerica | exon |
| TCONS_00071604-exon-scaffold_62-1510915933:157548..159548 | TCONS_00071604-exon-scaffold_62-1510915933:157548..159548 | Clytia hemisphaerica | exon |
| TCONS_00071604-exon-scaffold_62-1491911889:157548..159548 | TCONS_00071604-exon-scaffold_62-1491911889:157548..159548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_62 | supercontig | scaffold_62:157548..159548 - |
Blast
The following BLAST results are available for this feature:
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