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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071607 ID=TCONS_00071607|Name=TCONS_00071607|organism=Clytia hemisphaerica|type=transcript|length=2148bp
TTTTCAGCAGATATTAACTgctatttttgtttttgctttacCATTTTGGC
GGATATCTTTTAATTTCTGGTACACTTGTGAtttaactttttcaaatatG
GATGAGAAGTCATATAAATGAATTTATATTGTTTTATATACTAATACTGG
ATTCATTGTTCAATAAACCAaaagcagccggcggagagatttattagaaa
tatgtgttctaaaatctaggaaaaacagtTTGCAAAGATAAACTTgcaag
atatttgttttttttctccacgaaagatgttttCAGAAAACTTTTAGGGT
TACAAGCTGGAAACAATTGAATTTTTATCCTGcttgggaagaaattttca
tccctacTGAAAGAGAAACTTCTACCAGGGCTAACACAGGATAACACCAG
GGTTGTATCAACTAAACGAGGGATACCAGACTTTTCTAATCATCTGGAAA
TCATCAATTACATTTCTCATTGATCCTGATAAAGATTACAAGTGAGATCC
AGGGCAACCAATTGGTTAGTAGAATCTGCAGACGCACCAAAAATAATAAG
TTACCTCGACAACCAAAACTATAAAAATCTTAAAGTAAAGGTAATCTGAC
TTTATTTGTCACCCTTTCAATTTCGTCTACAGATAGAACAGGTGACAAAA
ACAAACAAGTCTTGACTTTTTTCAAGGTTTGAGGGTGTATATGCTTTTAA
GCGCTGCGTATTGTTCAacggttttctttttttctttcttttctattGAC
TACGATAATTTTAATGCAATGacagatttataaaaaaatagcaTGGATTT
AAGCAAAGGAATAATAAGAATCATGTCTGTTGGGCCAACAGGTGTTGGCA
AATCAACAATTGGAAACAAGCTTCTTGGCCTATCGCATAATGACTTTCGA
TACTTGAAAGCAGAAGCATCATCGATGAGTTGTACTCAAGTTCCTGTGAC
AGTTCAAAAAGGGAATGTTATGTACACTGATGTACCTGGGTTGCCAGACA
CTAATCCAGATAAAACAAAGATCGTTTATGATGTTATCATAGAAGAAGCT
AAAAAACCACTCACTgctattttctttgtttttgcgGTCGATATGAGAAT
GGATAAAGCAACGAAAGATCGGATTAGGAATTGTTCATTGCTTTTCAATG
AAATCAATAGATGCTCTGCTGCTAAGATCCTGATTCTAAACGACATAAGA
TCTTGGAGCAATCCAAATTGCTTAGAGGAGAAAAGTGAGGAATACAAGAC
AGAAAAAGCCATATATGACCAAGTTCGTCTTGACACACAAAAACACTACG
AACAAGATATTAAGAATTCCACGGGAATCGAGTTTTATTGCACCAAAGTC
ATCTATGGTATTAACAAAAAGATAAATCCAGATAATAACATGAATGCAGT
CTTGCATTACCTGGAATTGACTCTTCAGAGCTTCCCTTGTGAAGCATCAC
CACATTTACGTAATTTCAAAATGTTGGAAAAAGTTGTGACAAGTGCGAGG
GAAAATTGTGATTTTGAGCAACAGTTAATTGACGATCAAGAGAAAATGat
taaaagtttagaaaaatcaatttccacTTTAAAAGTTACAGAAGGAGTTG
CTATAGCTGCTACAGGCGCAGTTGCTGTAACAGCTGTAGTTACAGCTTTT
TTTACTGCTGGTGTTTCATTAGTGATTGGAGGTGTCGCTGCTGGTGCTGC
TGGTGTTGCAAAATTGACTATAGGGTCGACGAAAATAGCAATTGCTTTGA
AGGAAAAAGAGTTGAAAAGTgcgaaagaaaaattgaacaaGGACAAcctg
aaaaaatatatttctgaATATAAAGAACAATGTAAATTATTTGAAGATTT
AAAAGCAGCTCTTAATGAACGATAATATAATTTCACTAGATACACAGGAT
AATAAAGTTCGAGTATTGACAACGCACGACAATGAGTCAAATACAActtt
aaattatgtttttttaatttttttgaaaaaagaacgaGGATTGATTACAA
AAGGATTtattcaatgttttgaaaaaaaatacaaacttttttttatgaga
atagtgtactttggatgagggtcaagtaagTGCCACAATTGAGGgcgaaa
tattcttaacgttttcttactttttcagactttactttttttacaaac Run BLAST on NCBI protein sequence of TCONS_00071607-protein >TCONS_00071607-protein ID=TCONS_00071607-protein|Name=TCONS_00071607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MDLSKGIIRIMSVGPTGVGKSTIGNKLLGLSHNDFRYLKAEASSMSCTQV
PVTVQKGNVMYTDVPGLPDTNPDKTKIVYDVIIEEAKKPLTAIFFVFAVD
MRMDKATKDRIRNCSLLFNEINRCSAAKILILNDIRSWSNPNCLEEKSEE
YKTEKAIYDQVRLDTQKHYEQDIKNSTGIEFYCTKVIYGINKKINPDNNM
NAVLHYLELTLQSFPCEASPHLRNFKMLEKVVTSARENCDFEQQLIDDQE
KMIKSLEKSISTLKVTEGVAIAATGAVAVTAVVTAFFTAGVSLVIGGVAA
GAAGVAKLTIGSTKIAIALKEKELKSAKEKLNKDNLKKYISEYKEQCKLF
EDLKAALNER Run BLAST on NCBI transcript from alignment at scaffold_62:157548..163437- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071607 ID=TCONS_00071607|Name=TCONS_00071607|organism=Clytia hemisphaerica|type=transcript|length=5890bp|location=Sequence derived from alignment at scaffold_62:157548..163437- (Clytia hemisphaerica)
TTTTCAGCAGATATTAACTGCTATTTTTGTTTTTGCTTTACCATTTTGGC
GGATATCTTTTAATTTCTGGTACACTTGTGATTTAACTTTTTCAAATATG
GATGAGAAGTCATATAAATGAATTTATATTGTTTTATATACTAATACTGG
ATTCATTGTTCAATAAACCAAAAGCAGCCGGCGGAGAGATTTATTAGAAA
TATGTGTTCTAAAATCTAGGAAAAACAGTTTGCAAAGATAAACTTGCAAG
ATATTTGTTTTTTTTCTCCACGAAAGATGTTTTCAGAAAACTTTTAGGGT
TACAAGGTAACTAGGCAACAAGATTACATCAATTTCCTTTTGAATATACC
CCTGTCTCTTTAAAAGATGTGTTCTGAAGCTTTCTAGGGTTCCCTATACA
ACAAGAACACGCGTTAGATGACCTTGATTATACCCCTGTCTCGTCCGAAC
ACATTATTTTTAGCTGATTAATTTCGAAGATCCGATCAGAACAGATCAAA
TGTTCTAGCTGAAATATGCTCTCAGAACACGTTGCTAAAAGAGATCGCCT
CGCCGGCTGCTTTCGATACACCCCTGTGTTAAAGACCCGTTGGGGACCCC
GGTTAATGAAAAATTTGCCCAAATTTCTTCACCGTTGTGGTAAAGAAGAT
ACCATAAGATTTTCACATGATGGAAAAAATACACCCTAAAATCCCTCTGC
TATTTATTTTAGCTGGAAACAATTGAATTTTTATCCTGCTTGGGAAGAAA
TTTTCATCCCTACTGAAAGAGAAACTTCTACCAGGGCTAACACAGGATAA
CACCAGGGTTGTATCAACTAAACGAGGGATACCAGACTTTTCTAATCATC
TGGAAATCATCAATTACATTTCTCATTGATCCTGATAAAGATTACAAGTG
AGATCCAGGTAATGTTTTTTGTATTAAAATGGGAGTAGTGTGAGTAGTGT
GTAGCTGAGATTATAATTTACTTTTTGCCCAAGTTTGAACTCTGATCCGT
TCGAAAAGTGTGCAATGACTATTGCGTTTGAATGTCGTATCTTGATCAAT
GATCTTGATTGATGTCTTCTTGCATTCTTGCCTTTCGATAATTTCATTTG
ATGGACGATTGAAAGCAGCTTGATACAAACAGTCGTTTTCTCCTCCAGCT
TCAACTTCAACAAGAATACCAAATCTTCTAGATTCTATTTTGATACTGGT
ATCAATTACTATGATTGAATGTCTTCTTAAAAACTCATATCAATCGCCTT
TTTTCTTTATGCGGTTCTTATTGATAACACAGAAATATATATATTTTTTA
AACACTACCCCATAAATCGTTATTTGAACTTTATGAAAATATACTCTCTT
CAAGTGCGTGTAAATAACTTCTATTGTTTAATACAAAATAATTCTTCGAA
GTGAATAACCCCTGTTGTGCGCAGATTTGTAATACTTGCGCAGATTTGTA
ATACCTGCGCAGATTTGTAATAAACTTTGTGCAAATTTGTAATACTTGAG
CTGCGCAGAAATGTAATACTTCTCTGCGCAGATTTGTAATACTTGCGCAG
ATTTGTAATACCTGCGCAGATTTGTAATAAACTTTGTGCAAATTTGTAAT
ACTTGAGCTGCGCAGAAATGTAATACTTCTCTGCGCAGATTTGTAATTTG
GAATTTCCCACGAAGAAAAGTTTCGAAAAAAAGACTTAGAAAATAATCAG
AAAATCACACAAAGGTTTTATATCTTTAGTATAAACACTAACTTTATAAG
AAACGAATCAATATATTTTAATCTAATGAAAATTGGCTTTTGGCAGTTGG
TTCTTTCAATACAAACATGGGATTTTGAACAATTTCAATATTTTCATTTT
TCTTACAAGCATCAACTTTATAAGAAACGAATCAATATATTTTAATCTAA
TGAAAATTGGCTTTTGACTGTTGGTTCTTTCAATACAGACATGGATTGGA
AATAATTTTAAGCATTTTCATTTTTCTTATAAGCATCAACTTTATAAGAA
ACGAATCAATATCTCTCAATCTAATGGAAATTTGCTTTCGGCAGTTGGTT
CTTTCAATACAAACATGGGATTTTGAATACAATTTCAATATTTTCATTTT
TCCTATAAGCATCAACTTTATAAGAAACGAATCAATATCTTTTAATCTAA
TGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTGACAAAAATATTTTTATATCATTAAT
TGTTTTTTCATAACAAAGTGCTTATAAAAATAAATATGTTCATGTTATTC
TTCGTACCTTGTTAATTTCGCATAGCGAATAACTCTTGATAGATAGACTG
GAGTCGTTTATAATGCGTGTAATACTAATAGCAATTATAATAATAATACG
GGATTTAGTTTGTATAAATAAGACTAAAATTGTTCCAATCATTACTTTTT
GCTTTGTTTCTACTATGTATAAATTAGTCGTCTAGCTTGTTAGACTACTT
GATAGACGGTGACATATCTTTCGGTAACATAGTAAACAAGGGACAGCGTA
CAATATGAGCATATTTATTTTTCTTATAGGCATTTACTTTATAAGAATCA
AATCAATAACTCTTGATAGATGGTGATATACCTTTAGGTAATTAGTTCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNATATTTATTTTTTATAAGCATATAC
TTTATAAGAGTTCTTAAAAATTAAACAACAATAGTTCTTAAATTGGTCTT
ATTTTTTTAGAGATTTTAAGCCTCGTTGGTATTGTAAAATTGTTTCATCA
AGGCTCGATGTAAAGTACATTTGAGATTAGCTTCAATCTCTACGTCTTGT
TTTTCCCATGTAGTTCAAATTGTAGGCGAAATTTGTTTACTTCGAAATAA
ACAATCACCGACAAGAAATAATTTTTATTTTACGAGTTATTGATTAGTTT
CTTATAAAAGCAGTTCTTATAAAAAATAAATATGTTCATGTTATTCTTCG
TACCTTGTTTACTTTGAAATAAACAGTGACCGACAAGAAATAATTTTTAT
TTTACGAGTTATTGATTAGTTTCTTATAAAAGCAGTTCTTATAAAAAATG
TACATGCTCATGTTATTCTTCGCACCTTGTTTACTTTGAAATAAACAGTT
ACCGACAAGAAATAATTTTACGAGTTATTGATTAGTTTCTTATAAAAGCA
GTTCTTATAAAAAATTATGTCCGCGCTATTCTCATAAACAATTTATATAT
TACCAGATAAATTTCTTATAAAAGCAGTTCTTATAAAAAATTATGTCCGC
GCTATTCTCATAAACAATTTATATATTACCAGATAAATTTCTTATAAAAG
CACTGCTTAGAAAAGAAATATTAATTGATTATTTATTCAATGTGCACAGT
GATGACGTTCGATGATCAAGGATTCAATTCAGTGAAAATTGTTATAGCAC
CTTTCTATAAGATCTTCATTTTTTTCTTCTTCATTTTTATCTTCATTTTT
AGAATTTTTTAAAGATTATTTTATTTCAAATTGTTTCAGTCACTAATATC
TTTCCAACGATACCAAATTTAAAAATATTAAAGCAATTCTTTAAAAGTTA
TAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAACAGACTTTAATTAA
AATAGTTAAGCTACAAATATATTCATCTGATAATGTTTTTTTAGGGCAAC
CAATTGGTTAGTAGAATCTGCAGACGCACCAAAAATAATAAGTTACCTCG
ACAACCAAAACTATAAAAATCTTAAAGTAAAGGTAATCTGACTTTATTTG
TCACCCTTTCAATTTCGTCTACAGATAGAACAGGTGACAAAAACAAACAA
GTCTTGACTTTTTTCAAGGTTTGAGGGTGTATATGCTTTTAAGCGCTGCG
TATTGTTCAACGGTTTTCTTTTTTTCTTTCTTTTCTATTGACTACGATAA
TTTTAATGCAATGACAGATTTATAAAAAAATAGCATGGATTTAAGCAAAG
GAATAATAAGAATCATGTCTGTTGGGCCAACAGGTGTTGGCAAATCAACA
ATTGGAAACAAGCTTCTTGGCCTATCGCATAATGACTTTCGATACTTGAA
AGCAGAAGCATCATCGATGAGTTGTACTCAAGTTCCTGTGACAGTTCAAA
AAGGGAATGTTATGTACACTGATGTACCTGGGTTGCCAGACACTAATCCA
GATAAAACAAAGATCGTTTATGATGTTATCATAGAAGAAGCTAAAAAACC
ACTCACTGCTATTTTCTTTGTTTTTGCGGTCGATATGAGAATGGATAAAG
CAACGAAAGATCGGATTAGGAATTGTTCATTGCTTTTCAATGAAATCAAT
AGATGCTCTGCTGCTAAGATCCTGATTCTAAACGACATAAGATCTTGGAG
CAATCCAAATTGCTTAGAGGAGAAAAGTGAGGAATACAAGACAGAAAAAG
CCATATATGACCAAGTTCGTCTTGACACACAAAAACACTACGAACAAGAT
ATTAAGAATTCCACGGGAATCGAGTTTTATTGCACCAAAGTCATCTATGG
TATTAACAAAAAGATAAATCCAGATAATAACATGAATGCAGTCTTGCATT
ACCTGGAATTGACTCTTCAGAGCTTCCCTTGTGAAGCATCACCACATTTA
CGTAATTTCAAAATGTTGGAAAAAGTTGTGACAAGTGCGAGGGAAAATTG
TGATTTTGAGCAACAGTTAATTGACGATCAAGAGAAAATGATTAAAAGTT
TAGAAAAATCAATTTCCACTTTAAAAGTTACAGAAGGAGTTGCTATAGCT
GCTACAGGCGCAGTTGCTGTAACAGCTGTAGTTACAGCTTTTTTTACTGC
TGGTGTTTCATTAGTGATTGGAGGTGTCGCTGCTGGTGCTGCTGGTGTTG
CAAAATTGACTATAGGGTCGACGAAAATAGCAATTGCTTTGAAGGAAAAA
GAGTTGAAAAGTGCGAAAGAAAAATTGAACAAGGACAACCTGAAAAAATA
TATTTCTGAATATAAAGAACAATGTAAATTATTTGAAGATTTAAAAGCAG
CTCTTAATGAACGATAATATAATTTCACTAGATACACAGGATAATAAAGT
TCGAGTATTGACAACGCACGACAATGAGTCAAATACAACTTTAAATTATG
TTTTTTTAATTTTTTTGAAAAAAGAACGAGGATTGATTACAAAAGGATTT
ATTCAATGTTTTGAAAAAAAATACAAACTTTTTTTTATGAGAATAGTGTA
CTTTGGATGAGGGTCAAGTAAGTGCCACAATTGAGGGCGAAATATTCTTA
ACGTTTTCTTACTTTTTCAGACTTTACTTTTTTTACAAAC Coding sequence (CDS) from alignment at scaffold_62:157548..163437- >TCONS_00071607 ID=TCONS_00071607|Name=TCONS_00071607|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at scaffold_62:157548..163437- (Clytia hemisphaerica)
ATGGATTTAAGCAAAGGAATAATAAGAATCATGTCTGTTGGGCCAACAGG
TGTTGGCAAATCAACAATTGGAAACAAGCTTCTTGGCCTATCGCATAATG
ACTTTCGATACTTGAAAGCAGAAGCATCATCGATGAGTTGTACTCAAGTT
CCTGTGACAGTTCAAAAAGGGAATGTTATGTACACTGATGTACCTGGGTT
GCCAGACACTAATCCAGATAAAACAAAGATCGTTTATGATGTTATCATAG
AAGAAGCTAAAAAACCACTCACTGCTATTTTCTTTGTTTTTGCGGTCGAT
ATGAGAATGGATAAAGCAACGAAAGATCGGATTAGGAATTGTTCATTGCT
TTTCAATGAAATCAATAGATGCTCTGCTGCTAAGATCCTGATTCTAAACG
ACATAAGATCTTGGAGCAATCCAAATTGCTTAGAGGAGAAAAGTGAGGAA
TACAAGACAGAAAAAGCCATATATGACCAAGTTCGTCTTGACACACAAAA
ACACTACGAACAAGATATTAAGAATTCCACGGGAATCGAGTTTTATTGCA
CCAAAGTCATCTATGGTATTAACAAAAAGATAAATCCAGATAATAACATG
AATGCAGTCTTGCATTACCTGGAATTGACTCTTCAGAGCTTCCCTTGTGA
AGCATCACCACATTTACGTAATTTCAAAATGTTGGAAAAAGTTGTGACAA
GTGCGAGGGAAAATTGTGATTTTGAGCAACAGTTAATTGACGATCAAGAG
AAAATGATTAAAAGTTTAGAAAAATCAATTTCCACTTTAAAAGTTACAGA
AGGAGTTGCTATAGCTGCTACAGGCGCAGTTGCTGTAACAGCTGTAGTTA
CAGCTTTTTTTACTGCTGGTGTTTCATTAGTGATTGGAGGTGTCGCTGCT
GGTGCTGCTGGTGTTGCAAAATTGACTATAGGGTCGACGAAAATAGCAAT
TGCTTTGAAGGAAAAAGAGTTGAAAAGTGCGAAAGAAAAATTGAACAAGG
ACAACCTGAAAAAATATATTTCTGAATATAAAGAACAATGTAAATTATTT
GAAGATTTAAAAGCAGCTCTTAATGAACGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071607-exon-scaffold_62-1575043694:163132..163437 | TCONS_00071607-exon-scaffold_62-1575043694:163132..163437 | Clytia hemisphaerica | exon |
| TCONS_00071607-exon-scaffold_62-1575043694:162530..162725 | TCONS_00071607-exon-scaffold_62-1575043694:162530..162725 | Clytia hemisphaerica | exon |
| TCONS_00071607-exon-scaffold_62-1575043694:157548..159193 | TCONS_00071607-exon-scaffold_62-1575043694:157548..159193 | Clytia hemisphaerica | exon |
| TCONS_00071607-exon-scaffold_62-1510915933:163132..163437 | TCONS_00071607-exon-scaffold_62-1510915933:163132..163437 | Clytia hemisphaerica | exon |
| TCONS_00071607-exon-scaffold_62-1510915933:162530..162725 | TCONS_00071607-exon-scaffold_62-1510915933:162530..162725 | Clytia hemisphaerica | exon |
| TCONS_00071607-exon-scaffold_62-1510915933:157548..159193 | TCONS_00071607-exon-scaffold_62-1510915933:157548..159193 | Clytia hemisphaerica | exon |
| TCONS_00071607-exon-scaffold_62-1491911889:163132..163437 | TCONS_00071607-exon-scaffold_62-1491911889:163132..163437 | Clytia hemisphaerica | exon |
| TCONS_00071607-exon-scaffold_62-1491911889:162530..162725 | TCONS_00071607-exon-scaffold_62-1491911889:162530..162725 | Clytia hemisphaerica | exon |
| TCONS_00071607-exon-scaffold_62-1491911889:157548..159193 | TCONS_00071607-exon-scaffold_62-1491911889:157548..159193 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_62 | supercontig | scaffold_62:157548..163437 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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