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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071616 ID=TCONS_00071616|Name=TCONS_00071616|organism=Clytia hemisphaerica|type=transcript|length=1426bp
ATGGAGATGTAGAATTAAATCCAGGGCCAATTAACAATGCAATTAAATCT
CCAAGAGGAAGaccaaaaaagaaaacgtgttttCGAGGAACCCCAAATAA
GATACATAATGATACTGCGAATCCCCTCAGAGAAAACAAACCATTAGGAT
TGAAAAATCTAGGTCAAAATGTCTGTTTCTTCAATTCAGTTATTCAATCA
TTATACACTATTGATACCTTCCGTGAATCTGTTAAAACTCTTGATACCAA
TGACTCCAGTACTTTAGCAATCAAAGACTTATTTTCAGCAATAGAAAGCT
CTGAATCGCCCATAGAAACGTACGAATTCATAAAGTCTATAGAACTACCA
GGCTACGATTATACACAACGAGAACAATTTGATGCTCAAGAGTGTGTAAA
TTCTATTTTGAACCATGTGTATCAagttcattttaatgaaattccTGCAG
AAAGTTCATTTCGAGTGTCATTTTTGGAATCAGTTTTATGTCAAAGATGC
AATAATCCCTCTGAACGGACAGAATACTATAATATGTGTCGGATTCAatt
tcctagtccttttagtcCTGATAATTCGATGGAAAATTTGATTGAGAAAT
TAACTAATGATCCTTACGGCGAACTTATTGAAGACTACGTATGCTCAAAT
TGCCCAATAAGAACAAATGCCACAAAAAGTAGAACCCTATTTAATGTTTC
TCATGCCTTGATCATTCAACTTGTAATTTTTTGCTATGATCAAACCACCG
GACGCTTGAAGAAATTAGTTCCAAATTTAAATATTGAAACGGAAATAGAA
AACGTTCTTCTCGGGACACTTGAATTACAAGCAATTGTTTATCATCACGG
TAATACACCTGATAGTGGTCATTATACATCTGTTGTAAAATATAACGAAC
AATGGTATTCAGTAAATGATGATCATGTTACCGTTATTAAAGGTGATGAG
TTTAACTGCAAAATTAGTGATAAAATAGTTCCATACGTATTGATTTACAA
GAAATGCAATCGAGAAATTGATTCTTTGCCTCTGAACTCCGATAATAACA
TTTTTGACCGAACCTCTAGTAAAGATAGAATTTTCGTTGAAAGTTCAGAA
ATTCCCAATACTTTCAAAATTGAATCAAAGTTAGTTGGAACCGACAAAGA
TAAACCTAAAGAGATAAATACAAATGGCAATTCGAATACCATTGATTTTT
CTATTGATCAATCATCAAATATTCAACcagaaaaaatgatgaaaagtgcC
CTCCTCAAAGAATTAGAAAATCAAGAACGTAAAGTCACGGCATCGAAAAA
CAAGCCAGAGTCCGATATTATTAGGTCTACTCCTTTCAAAAGGAAGCGAA
ATTTCacaaatgtgtcaaaaaagactGCAATGAAAAAAGCCAGGTATAAT
CTCGATGATGTCAAAAAAGAGCTATT Run BLAST on NCBI protein sequence of TCONS_00071616-protein >TCONS_00071616-protein ID=TCONS_00071616-protein|Name=TCONS_00071616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
GDVELNPGPINNAIKSPRGRPKKKTCFRGTPNKIHNDTANPLRENKPLGL
KNLGQNVCFFNSVIQSLYTIDTFRESVKTLDTNDSSTLAIKDLFSAIESS
ESPIETYEFIKSIELPGYDYTQREQFDAQECVNSILNHVYQVHFNEIPAE
SSFRVSFLESVLCQRCNNPSERTEYYNMCRIQFPSPFSPDNSMENLIEKL
TNDPYGELIEDYVCSNCPIRTNATKSRTLFNVSHALIIQLVIFCYDQTTG
RLKKLVPNLNIETEIENVLLGTLELQAIVYHHGNTPDSGHYTSVVKYNEQ
WYSVNDDHVTVIKGDEFNCKISDKIVPYVLIYKKCNREIDSLPLNSDNNI
FDRTSSKDRIFVESSEIPNTFKIESKLVGTDKDKPKEINTNGNSNTIDFS
IDQSSNIQPEKMMKSALLKELENQERKVTASKNKPESDIIRSTPFKRKRN
FTNVSKKTAMKKARYNLDDVKKEL Run BLAST on NCBI transcript from alignment at scaffold_62:41510..42935 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071616 ID=TCONS_00071616|Name=TCONS_00071616|organism=Clytia hemisphaerica|type=transcript|length=1426bp|location=Sequence derived from alignment at scaffold_62:41510..42935 (Clytia hemisphaerica)
AATAGCTCTTTTTTGACATCATCGAGATTATACCTGGCTTTTTTCATTGC
agtcttttttgacacatttgtGAAATTTCGCTTCCTTTTGAAAGGAGTAG
ACCTAATAATATCGGACTCTGGCTTGTTTTTCGATGCCGTGACTTTACGT
TCTTGATTTTCTAATTCTTTGAGGAGGgcacttttcatcattttttctgG
TTGAATATTTGATGATTGATCAATAGAAAAATCAATGGTATTCGAATTGC
CATTTGTATTTATCTCTTTAGGTTTATCTTTGTCGGTTCCAACTAACTTT
GATTCAATTTTGAAAGTATTGGGAATTTCTGAACTTTCAACGAAAATTCT
ATCTTTACTAGAGGTTCGGTCAAAAATGTTATTATCGGAGTTCAGAGGCA
AAGAATCAATTTCTCGATTGCATTTCTTGTAAATCAATACGTATGGAACT
ATTTTATCACTAATTTTGCAGTTAAACTCATCACCTTTAATAACGGTAAC
ATGATCATCATTTACTGAATACCATTGTTCGTTATATTTTACAACAGATG
TATAATGACCACTATCAGGTGTATTACCGTGATGATAAACAATTGCTTGT
AATTCAAGTGTCCCGAGAAGAACGTTTTCTATTTCCGTTTCAATATTTAA
ATTTGGAACTAATTTCTTCAAGCGTCCGGTGGTTTGATCATAGCAAAAAA
TTACAAGTTGAATGATCAAGGCATGAGAAACATTAAATAGGGTTCTACTT
TTTGTGGCATTTGTTCTTATTGGGCAATTTGAGCATACGTAGTCTTCAAT
AAGTTCGCCGTAAGGATCATTAGTTAATTTCTCAATCAAATTTTCCATCG
AATTATCAGgactaaaaggactaggaaatTGAATCCGACACATATTATAG
TATTCTGTCCGTTCAGAGGGATTATTGCATCTTTGACATAAAACTGATTC
CAAAAATGACACTCGAAATGAACTTTCTGCAggaatttcattaaaatgaa
ctTGATACACATGGTTCAAAATAGAATTTACACACTCTTGAGCATCAAAT
TGTTCTCGTTGTGTATAATCGTAGCCTGGTAGTTCTATAGACTTTATGAA
TTCGTACGTTTCTATGGGCGATTCAGAGCTTTCTATTGCTGAAAATAAGT
CTTTGATTGCTAAAGTACTGGAGTCATTGGTATCAAGAGTTTTAACAGAT
TCACGGAAGGTATCAATAGTGTATAATGATTGAATAACTGAATTGAAGAA
ACAGACATTTTGACCTAGATTTTTCAATCCTAATGGTTTGTTTTCTCTGA
GGGGATTCGCAGTATCATTATGTATCTTATTTGGGGTTCCTCGaaaacac
gttttcttttttggtCTTCCTCTTGGAGATTTAATTGCATTGTTAATTGG
CCCTGGATTTAATTCTACATCTCCAT Coding sequence (CDS) from alignment at scaffold_62:41510..42935 >TCONS_00071616 ID=TCONS_00071616|Name=TCONS_00071616|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_62:41510..42935 (Clytia hemisphaerica)
TAGCTCTTTTTTGACATCATCGAGATTATACCTGGCTTTTTTCATTGCag
tcttttttgacacatttgtGAAATTTCGCTTCCTTTTGAAAGGAGTAGAC
CTAATAATATCGGACTCTGGCTTGTTTTTCGATGCCGTGACTTTACGTTC
TTGATTTTCTAATTCTTTGAGGAGGgcacttttcatcattttttctgGTT
GAATATTTGATGATTGATCAATAGAAAAATCAATGGTATTCGAATTGCCA
TTTGTATTTATCTCTTTAGGTTTATCTTTGTCGGTTCCAACTAACTTTGA
TTCAATTTTGAAAGTATTGGGAATTTCTGAACTTTCAACGAAAATTCTAT
CTTTACTAGAGGTTCGGTCAAAAATGTTATTATCGGAGTTCAGAGGCAAA
GAATCAATTTCTCGATTGCATTTCTTGTAAATCAATACGTATGGAACTAT
TTTATCACTAATTTTGCAGTTAAACTCATCACCTTTAATAACGGTAACAT
GATCATCATTTACTGAATACCATTGTTCGTTATATTTTACAACAGATGTA
TAATGACCACTATCAGGTGTATTACCGTGATGATAAACAATTGCTTGTAA
TTCAAGTGTCCCGAGAAGAACGTTTTCTATTTCCGTTTCAATATTTAAAT
TTGGAACTAATTTCTTCAAGCGTCCGGTGGTTTGATCATAGCAAAAAATT
ACAAGTTGAATGATCAAGGCATGAGAAACATTAAATAGGGTTCTACTTTT
TGTGGCATTTGTTCTTATTGGGCAATTTGAGCATACGTAGTCTTCAATAA
GTTCGCCGTAAGGATCATTAGTTAATTTCTCAATCAAATTTTCCATCGAA
TTATCAGgactaaaaggactaggaaatTGAATCCGACACATATTATAGTA
TTCTGTCCGTTCAGAGGGATTATTGCATCTTTGACATAAAACTGATTCCA
AAAATGACACTCGAAATGAACTTTCTGCAggaatttcattaaaatgaact
TGATACACATGGTTCAAAATAGAATTTACACACTCTTGAGCATCAAATTG
TTCTCGTTGTGTATAATCGTAGCCTGGTAGTTCTATAGACTTTATGAATT
CGTACGTTTCTATGGGCGATTCAGAGCTTTCTATTGCTGAAAATAAGTCT
TTGATTGCTAAAGTACTGGAGTCATTGGTATCAAGAGTTTTAACAGATTC
ACGGAAGGTATCAATAGTGTATAATGATTGAATAACTGAATTGAAGAAAC
AGACATTTTGACCTAGATTTTTCAATCCTAATGGTTTGTTTTCTCTGAGG
GGATTCGCAGTATCATTATGTATCTTATTTGGGGTTCCTCGaaaacacgt
tttcttttttggtCTTCCTCTTGGAGATTTAATTGCATTGTTAATTGGCC
CTGGATTTAATTCTACATCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071616-exon-scaffold_62-1491911889:41510..42935 | TCONS_00071616-exon-scaffold_62-1491911889:41510..42935 | Clytia hemisphaerica | exon |
| TCONS_00071616-exon-scaffold_62-1510915933:41510..42935 | TCONS_00071616-exon-scaffold_62-1510915933:41510..42935 | Clytia hemisphaerica | exon |
| TCONS_00071616-exon-scaffold_62-1575043694:41510..42935 | TCONS_00071616-exon-scaffold_62-1575043694:41510..42935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_62 | supercontig | scaffold_62:41510..42935 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016579 | protein deubiquitination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016579 |
protein deubiquitination |
| molecular_function |
GO:0036459 |
thiol-dependent ubiquitinyl hydrolase activity |
Blast
The following BLAST results are available for this feature:
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