TCONS_00071660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071660
Unique NameTCONS_00071660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071660 ID=TCONS_00071660|Name=TCONS_00071660|organism=Clytia hemisphaerica|type=transcript|length=1851bp
tcagaaaaatataaaaaatgctGTAAAAAACAATATATCAAACTGGGTCT
GCTGTTTAGAAGAGAAAAATGGCTGGTTCAGCTTTGAAAAGATTGATGGC
TGAGTACAGGCAGCTGTTGTCAAATCCACCAGAAGGCATTCTTGCAGGAC
CTtcaaatgaagaaaacttttttgaatggGAAGCACTGATTGCtgggCCA
GAAGATACACCTTTTGATGGTGGTGTATTTCAAGCTAAGTTGAGTTTTCC
ACATGATTATCCATTGAGtccaccaaaaatgaagttcaccAGTGATGTTT
TTCATCCTAACAtttattCTGATGGACGTGTTTGTATATCTATTCTCCAT
GCTCCTGGTGACGACCCTATGGGGTATGAAACTAGTGCTGAGAGGTGGTC
GCCTGTTCAATCTGTGGAGAAAATCCTACTTTCAGTTGTTAGTATGCTCG
CAGAACCAAATGATGAAAGTCCTGCCAATGTTGATGCATCCaaaatatGG
CGTGAAAGCCGTGACCAATTTAACCGAATGGCTGATGAATGTGTCCGAAA
ATCACTTGGTATCACCAAAAAACTTCAATAAATCCAAAGAATGGGAAAAG
CAGTGCCGATACTGTAAGAGTTATATAATTTCATactatttattttgatt
ttcgtttgtttttaaaacgaGATCTACCAAAATTGCCATAGGTTGATTTA
AAAATATACTATTAGTTTATATCAAACTTGTAATAGTATTTATCACTTTA
ATGGCATATATAAATAACaaactttgtttttgaaaaaatcaaatctaAAT
ATAACGGTATCTTGCTTAAGACACATATTTATCATTCGTATTATCACTGT
GCTGACCTTAACCTATAGTAAGTTTCCCAAAACGTATAGCGTTCAAGAAT
AATCAGTTATGATTTGATTAAGATAAGGTAAGGTTAAATTTTGGATATTA
TAGCATTTTGTTTAGGTTCTGAGTTTCTTCTTGATGGGCATTTTAATACC
TTTCAATACTTGGGAAGGCTTGTCTCTTAATTGTCATTATCGTCGGATTA
TTTAAAGTTGAATTGATTTCCTAGTTGATTTTatgaggcccccagcggtt
ttcgtgatggcatGATTGGCGTTTTTTTGAAGTTCGTGATTACGTGATTG
AAGATTTTGAAGTACATGATTGCGTgatcaacgtgatcgtgatagaaagg
aaatttaacttgtaataacgtgatttggaattttttttgtgtgaTAGCGT
GACTTGAAAGGTGACTGGGGGCCTCTATTATTGCTTGATTTCCAAACAAT
AATGGCAAACTGTAGACTCATTTTAAGGATGAACTCTCACGAGGCACACT
GTATTTACAAAGCTTTTCAATTGCGCTAAGCCTAATACTTCTTTTGGGTC
AGTAACTTTTATCGTGTATAATTTCAGACACTTTTTGGATTATCTCGAag
taaaaatagtttttaatcGTGGGATTTTAGCCTCTTGCTACATCTCGGAT
TACATAACGTTTTGGCAGTACTCATTTCCTTTTCATAAAAGGGATCAATT
TGTATTGTACTATGTCGAcatatttgatttgttttgttcttttggCTGTA
TAAGGTGTTGTCGTTTTTGAATGTCAATATTTGCTTTGGAATATGGTATA
CTTTTTTCATGACATcttgaattattttttgatgTTCTAATCAAAGttat
aaatttcaaactcatttatACTCTTATTTTGTTGTTACCTTCGattcttt
tcaaaaagattattaGATCCTCCTATTGTTTATTTTGCCAAAGGTGGTCA
ATACATTTAGGAACAAACTGACGCATAATTGGACTTAAAATAATATAAGT
G
Run BLAST on NCBI

transcript from alignment at scaffold_63:623098..629048+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071660 ID=TCONS_00071660|Name=TCONS_00071660|organism=Clytia hemisphaerica|type=transcript|length=5951bp|location=Sequence derived from alignment at scaffold_63:623098..629048+ (Clytia hemisphaerica)
tcagaaaaatataaaaaatgctGTAAAAAACAATATATCAAACTGGGTCT
GCTGTTTAGAAGAGAAAAATGGCTGGTTCAGCTTTGAAAAGATTGATGGC
TGAGTACAGGCGTAAGTAATTTTTGGCAGTTTTTGAACTTTCAGTGGTTT
TGAGCCAGCTCTGTTTCTGAAATTCTTATGTGTTATTTTTTATACTTAAA
GGATACCACTCCATGTGATTGTCAGGCAAAATAGGATGTGATTGTCATGC
AAAATAGGCTACGTGCTTTTTCATTTCCAGTATTTTATTAATTACTCATG
TATACAATTTTTACCTGGTGTCTTTTAGAGCTGTTGTCAAATCCACCAGA
AGGCATTCTTGCAGGTTGATTCACCTTTATTTATTATTTGTGTTAACTTG
TTGGGCATTAtaagaaatagtccgtgccccccccccNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCCGTCCCCCCCTTGTTGAGGATATTGGACATC
CAGGTGGTAGGATCTTATAAGAGATTGAGTATATCCAGGGGGTACAGAAC
ATAATGTGCCTGGATATCCGTTGGGTACAGGGTGAAAAGCCCTGAATATC
CGGGGAGTATAGGTCAAAATGCACAGATATCCTCAACCCTTATGTCCGCT
TTTTCAGGTCCGATATCCAAGGGGGTATTTATTTTTAAGTTGGACATACA
GGGGGCTGGAAAGGCCCAATGCAAGTTTTATATTATAATCTTTTTCTGAA
AGTAATGAACCAACGATTATAAGTTtcatatattctttgaaaatcataat
caggctaaaacaaaataaaaaccacATTAAAAACTAGAAATGTTAAGCTA
AAATGTActgaaaattaacttttttatcaCAATATATCAATAAGATTAAA
CAGTTTTATAAGTGTTCTGCGAAATATTATATCCCTCCATTTTCACAGGA
CCTtcaaatgaagaaaacttttttgaatggGAAGCACTGATTGCGTAAGT
ACACTTCTCATTGCAGGCCTGGCCATAAACAAAACCTTGCGTGTGCCAAA
GTAGCACTCTATGTTACAGATTATGGCGTGCTATTAGCATTCTCAAAGGA
GATTTTGTACAAACTTGTATATTTTAGaagtgctattttagcactCGCAA
ATCATTTTAGGTGTGTACCAGCGTGTGCGAGTGCAATAGCACGCCATACA
GGGCCAGGCCTGCATTGCTTTTTTTATGTCAGAAGCCATCGCTTCATTTT
AGCACTATTTTGTAGAAGGTAATATCTAAATTTAGTTTTAAAAGCCACAT
GCAAAATGGAAATAGTTCTAGTAAAGATGAAATGCAAATGCTATGATCAA
CCATCCCATCCTTTGATAGGCATAATACCTATGCTGCACTGCAGGAAAAC
CTGGATCTCTCATAAAAAGTGAGATCCGCCAGTGAGATCCATGTCCATTC
CAATAACCATGTTGCTTTTCTAGTTTCTTTTGCGAAAAATACTCTCACTC
GTAAATTCATCTATTATCCAAAATCAATCTTTTccttgtttcattttttt
tcagtgggCCAGAAGATACACCTTTTGATGGTGGTGTATTTCAAGCTAAG
TTGAGTTTTCCACATGATTATCCATTGAGtccaccaaaaatgaagttcac
cAGTGATGTTTTTCATCCTAACAGTAAGTCCATTGTGATATTGAAAATAC
AATCTCCTCGTTTAAGCCTCAGTATATTTATCTAAAAATGATTTGGAGTA
GCTGGGAATGTGAAAATGAAAGATTCAGTCAGGTTCAGTCAGGCATTCTT
CTGTAACAtttcacttttaattttttttgctcaaattttgtgagGTAACT
CCACATGGCGTGTATTTTTGGGGCAGAGGGTCAACTTTTGTTGATAATAC
AAGCTTGAAGCCAAAATTTCAGTAAAATCAGACAAGTGGTTATACTGAAA
GTGAGCACTGACCAGTCTGAAAAATACCAACTGCTTGTGACAAAATTGTG
ACACACTTTCTTAGATGGCCAATATCTATCACTGGTGAAGATTTTAAGTC
TAAAGCCCCATAAGTTCCTGACTTCTGGCAGGTGATCAACatctatttta
cagaccggtctgcaaAGTACCAAGTACTCACAGGAACGGTTTTTTCTGTG
ACTAGGCTCTTTTATTCTACAAATCAGCCTTCAGGAACTAATTGCAGGCA
AATTGAACGAGTAAATCAGTTATAATACATGATTTTGGTCAAGTTTACAT
TCTAGTCTGTAAAATATTAAACTATACCTACTCtctggtacctaatagcc
gggggatttggaataagcggggattttggaaaaaatctcaaaactcaATA
AGcgaggggggttggaataaaaatgtcctgggtggaaaattttggtaaag
aaggagcagaattagggcaaaagagggaactttcaaaaaaaatttcccaa
aaatcaataagcagggtggggggttggaataagaatgtcctgggtgaaaa
ttttcaaaaaattaattagtgcccccccccccggctattaggtacccgag
agtagttggccaaaccaaaattttgtaaatcatcttcaattatccatatc
taccactggtcaaaatttcaaggtcaaagcccttgtcaatcttgagattt
taaaAGATGCTTCCcccagtaaaaaataggaagatgcttGCTTGAAGGGC
TAAAATTCCTTGATATAcctctaatttcaaaattcgaactatctgttatt
ttttttcagtttattCTGATGGACGTGTTTGTATATCTATTCTCCATGCT
CCTGGTGACGACCCTATGGGGTATGAAACTAGTGCTGAGAGGTGGTCGCC
TGTTCAATCTGTGGAGAAAATCCTACTTTCAGTTGTTAGTATGCTCGCAG
GTATTAGATATTTAACTCTCATTACCTTTAGCTTTACTACCTTATCATGA
ATGCTGCAAAACCCCGAATTCAACAACTAGAGTAGACCATGATCAGCTTT
CAACCATCATCTTCTTCATCATTATTGTTCATTTCTAGAACCAAATGATG
AAAGTCCTGCCAATGTTGATGCATCCGTAAGTTGTTCTTTGCTGTTGTTT
TTTGTTCGAATAAATTGCCTTGGAAGGTTTGTATTTAGAAAGGCTTTAAA
ACCTacttttaaggaaaatttgcACTTTACACTTCAATCTTTCTGATGTG
AACCTCTAGATGCTGCCGGATGCAGATCAttctgtaattcaaactaaAAC
GATTGTCCCCTCAGCTTTGAAGGCTTTGAGGCTTTTTGTTATAGTAAAGA
AAGGTTCTTTGTCCCTTGATTAAATGATTGTATAAGGAAGTTGGGTACAG
TATtgtgtattcttgaaggaaaattaATTATGAAggatcaatagaccttt
tcataaattacgtcactaacattacttgcctcgtattcaaacaattacca
tggtgattatgtctcttgagacattaaatgatttttttaggaataggaag
tagttttaataaaatccactggTAGTTAATctccatggcaataatttcaa
aacgaggcaagtgatgttcgtaacgtaatttatgaaaaggtctatgtgCT
CTGTCTTAGGAAAGTCGTTTCTGTGTGTTCTTGAAGGAAAATGTATTCTG
TATTCCTGAAGGGAATGATATTTGTGTATTCTTGGAGGAAAATGATTTCT
GTGTATACTTAAAGGAAaatggaaacttttttttcattgaagGATGAATG
TGCTCTCTCTTGGGAAAATCTTTTCTGTGTGTTCTTAAAAGGAAAATGAT
TTCTGTATTTCTGAAGGAAAATTGATTCTTTGTTTCAATGAAGGAATGAA
TAGATTATTTCGTTGttctcttgaaaaaaaatgtttcctgGCTTAAGATA
TTGAGAGTGCAGGATGGGTCACTTTCGTATAACAGATTATGCCTTTGTAA
ACTGTCCTCGATTGAAAActtacttttgtttttcttttcagaaaatatGG
CGTGAAAGCCGTGACCAATTTAACCGAATGGCTGATGAATGTGTCCGAAA
ATCACTTGGTATCACCAAAAAACTTCAATAAATCCAAAGAATGGGAAAAG
CAGTGCCGATACTGTAAGAGTTATATAATTTCATactatttattttgatt
ttcgtttgtttttaaaacgaGATCTACCAAAATTGCCATAGGTTGATTTA
AAAATATACTATTAGTTTATATCAAACTTGTAATAGTATTTATCACTTTA
ATGGCATATATAAATAACaaactttgtttttgaaaaaatcaaatctaAAT
ATAACGGTATCTTGCTTAAGACACATATTTATCATTCGTATTATCACTGT
GCTGACCTTAACCTATAGTAAGTTTCCCAAAACGTATAGCGTTCAAGAAT
AATCAGTTATGATTTGATTAAGATAAGGTAAGGTTAAATTTTGGATATTA
TAGCATTTTGTTTAGGTTCTGAGTTTCTTCTTGATGGGCATTTTAATACC
TTTCAATACTTGGGAAGGCTTGTCTCTTAATTGTCATTATCGTCGGATTA
TTTAAAGTTGAATTGATTTCCTAGTTGATTTTatgaggcccccagcggtt
ttcgtgatggcatGATTGGCGTTTTTTTGAAGTTCGTGATTACGTGATTG
AAGATTTTGAAGTACATGATTGCGTgatcaacgtgatcgtgatagaaagg
aaatttaacttgtaataacgtgatttggaattttttttgtgtgaTAGCGT
GACTTGAAAGGTGACTGGGGGCCTCTATTATTGCTTGATTTCCAAACAAT
AATGGCAAACTGTAGACTCATTTTAAGGATGAACTCTCACGAGGCACACT
GTATTTACAAAGCTTTTCAATTGCGCTAAGCCTAATACTTCTTTTGGGTC
AGTAACTTTTATCGTGTATAATTTCAGACACTTTTTGGATTATCTCGAag
taaaaatagtttttaatcGTGGGATTTTAGCCTCTTGCTACATCTCGGAT
TACATAACGTTTTGGCAGTACTCATTTCCTTTTCATAAAAGGGATCAATT
TGTATTGTACTATGTCGAcatatttgatttgttttgttcttttggCTGTA
TAAGGTGTTGTCGTTTTTGAATGTCAATATTTGCTTTGGAATATGGTATA
CTTTTTTCATGACATcttgaattattttttgatgTTCTAATCAAAGttat
aaatttcaaactcatttatACTCTTATTTTGTTGTTACCTTCGattcttt
tcaaaaagattattaGATCCTCCTATTGTTTATTTTGCCAAAGGTGGTCA
ATACATTTAGGAACAAACTGACGCATAATTGGACTTAAAATAATATAAGT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044523XLOC_044523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071660-exon-scaffold_63-1491911889:623098..623208TCONS_00071660-exon-scaffold_63-1491911889:623098..623208Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1510915933:623098..623208TCONS_00071660-exon-scaffold_63-1510915933:623098..623208Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1575043694:623098..623208TCONS_00071660-exon-scaffold_63-1575043694:623098..623208Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1491911889:623426..623461TCONS_00071660-exon-scaffold_63-1491911889:623426..623461Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1510915933:623426..623461TCONS_00071660-exon-scaffold_63-1510915933:623426..623461Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1575043694:623426..623461TCONS_00071660-exon-scaffold_63-1575043694:623426..623461Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1491911889:624646..624691TCONS_00071660-exon-scaffold_63-1491911889:624646..624691Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1510915933:624646..624691TCONS_00071660-exon-scaffold_63-1510915933:624646..624691Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1575043694:624646..624691TCONS_00071660-exon-scaffold_63-1575043694:624646..624691Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1491911889:625252..625370TCONS_00071660-exon-scaffold_63-1491911889:625252..625370Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1510915933:625252..625370TCONS_00071660-exon-scaffold_63-1510915933:625252..625370Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1575043694:625252..625370TCONS_00071660-exon-scaffold_63-1575043694:625252..625370Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1491911889:626457..626597TCONS_00071660-exon-scaffold_63-1491911889:626457..626597Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1510915933:626457..626597TCONS_00071660-exon-scaffold_63-1510915933:626457..626597Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1575043694:626457..626597TCONS_00071660-exon-scaffold_63-1575043694:626457..626597Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1491911889:626736..626773TCONS_00071660-exon-scaffold_63-1491911889:626736..626773Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1510915933:626736..626773TCONS_00071660-exon-scaffold_63-1510915933:626736..626773Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1575043694:626736..626773TCONS_00071660-exon-scaffold_63-1575043694:626736..626773Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1491911889:627689..629048TCONS_00071660-exon-scaffold_63-1491911889:627689..629048Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1510915933:627689..629048TCONS_00071660-exon-scaffold_63-1510915933:627689..629048Clytia hemisphaericaexon
TCONS_00071660-exon-scaffold_63-1575043694:627689..629048TCONS_00071660-exon-scaffold_63-1575043694:627689..629048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:623098..629048 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.16064	4.447	6.01816	6.38723	2.32728	2.03216	5.61473	4.8162	6.20135	5.06338	5.07322	7.79516	4.10603	4.5187	4.46595	3.7945	5.58324	6.60525	5.51032	5.18684	7.64723	7.09484	4.57206	5.34719	6.4357	5.6235	9.19552	8.26081	5.18714	4.89439
Blast
[Close]
BLAST of TCONS_00071660 vs. Swiss-Prot (Human)
Match: UB2G2 (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 8.783e-90
Identity = 133/165 (80.61%), Postives = 149/165 (90.30%), Query Frame = 3 
Query:   69 MAGSALKRLMAEYRQLLSNPPEGILAGPSNEENFFEWEALIAGPEDTPFDGGVFQAKLSFPHDYPLSPPKMKFTSDVFHPNIYSDGRVCISILHAPGDDPMGYETSAERWSPVQSVEKILLSVVSMLAEPNDESPANVDASKIWRESRDQFNRMADECVRKSLGI 563
            MAG+ALKRLMAEY+QL  NPPEGI+AGP NEENFFEWEALI GPEDT F+ GVF A LSFP DYPLSPPKM+FT ++FHPNIY DGRVCISILHAPGDDPMGYE+SAERWSPVQSVEKILLSVVSMLAEPNDES ANVDASK+WR+ R+QF ++A + V+KSLG+
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 165
The following BLAST results are available for this feature:
BLAST of TCONS_00071660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2G28.783e-9080.61Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
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