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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072142 ID=TCONS_00072142|Name=TCONS_00072142|organism=Clytia hemisphaerica|type=transcript|length=1530bp
ttttttaataagcaacttTCAAATGAGATCCTGACAAGCTTATCAGAAAT
GATAGAATTTTGAATGAAACTGAAATTACTACTGGATATGAAAGAAATGA
GAAAATTGAAAGgattacaaaataaaaatgaaaatcttcgCCAAACATCG
CTTTATGAGAGTTTCGGACACCTTCCAGAGCTCGTGTTGTTCTTTGCGAG
TTTAGGGAGTCATATAAGTGGCTCAGCATGCCACTACTACAAGTACTTTT
ATTTCTCGgaaagaagaaattttcaattcgATTTTCGGAATCATAAACAG
ACGTGTGCCAAACATTTGAATACCACCCAAAGCAAACAACAGACAATGGT
TCAAAGTGACatgtcaagttttcaaatcatcGACATCTACTTCGGAATGG
TTCCAACAATCCTGGCGTGTTTGTTTCTCGGACCAATATCCGATCGAGTA
GGACGCAAACCCATCATAAAAATCGGATTAATCGGAATGATTTTGACTCA
AATTATGCATCTAGCAGTCATTCATATGGATTGGCCGATATGGGTGTTTT
ATTTGGTGACGCTAATGCGTTCTATAAGTGGAGGAGAGTTGGGAATTCGA
ATCGCAGCTATGGCTTATGTTGTTGATATTTGCAAGGAAACGAAATCGCT
GGCTTGGAAACTAGCAACACTACAGTGCGTTGAACTATTAGGTGCTATGA
TCAGTTCGTACACTAGTGGACCCCTCATTCAAAATACTGGGTTCCAATTC
CCAATAATGCTTAGTCTAGCTTTACAAATCACTCCTATGGTATACACTGT
GTGCTTCTTGAAGGAATCCTACAAAATGTGTGAGAAAGATCGGCTACCGG
CAAAAGAGATTCTCAAACAACCGCTACATTTGATTACAGTATTCACCAAA
CAGCGAAAGACTCGAAAAGAACTATACTTGTTGTTTGCTGTTTTTATTAT
GTTATCTGAAACGACTCACGCCTTTGATAGTGGTGGTGCTTTATTTTTGC
TTGGTCAGCCATTTTGTATGCCACCAAATTTATTGAGTTACTTGCATGGC
ATGAAAATAACTTTATCTGTTACTGGACTTTTGTTTAGTACCAAACTATT
GGCCAAATACCTTTCCAGTTTGACACTTTGTTTAGTTTCAATTTTTGTCA
CAATTATTGATCGATCTTCAATGGTGGTCATTGAAACTACATTGATGGTT
TTTCTTTTTGGAGGATTGAGATTTTTCGAAGGATGGTATTCACCGATTCT
TCGTTCCTTCATTTCGTCATCTGTAAACGAAGCGGAGCAAGGttccatcc
tttgtttactttcaatCATGGTAACTATTCTGACGTCCATcacaaaaaca
atatttttgacattatacACCAAACTTTTGCAACATGGAAAAGTTCGTTG
GTTTTTTGTGCTGACGTCACCATTAATCATAATGGCCACACCCTTATTGA
TatatttctggctggtgaagaagaaaagagaaaaatcagaaaaagaatTT
GGCAATAAGGAAATTAAAGATTGATTATAT Run BLAST on NCBI protein sequence of TCONS_00072142-protein >TCONS_00072142-protein ID=TCONS_00072142-protein|Name=TCONS_00072142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
MKLKLLLDMKEMRKLKGLQNKNENLRQTSLYESFGHLPELVLFFASLGSH
ISGSACHYYKYFYFSERRNFQFDFRNHKQTCAKHLNTTQSKQQTMVQSDM
SSFQIIDIYFGMVPTILACLFLGPISDRVGRKPIIKIGLIGMILTQIMHL
AVIHMDWPIWVFYLVTLMRSISGGELGIRIAAMAYVVDICKETKSLAWKL
ATLQCVELLGAMISSYTSGPLIQNTGFQFPIMLSLALQITPMVYTVCFLK
ESYKMCEKDRLPAKEILKQPLHLITVFTKQRKTRKELYLLFAVFIMLSET
THAFDSGGALFLLGQPFCMPPNLLSYLHGMKITLSVTGLLFSTKLLAKYL
SSLTLCLVSIFVTIIDRSSMVVIETTLMVFLFGGLRFFEGWYSPILRSFI
SSSVNEAEQGSILCLLSIMVTILTSITKTIFLTLYTKLLQHGKVRWFFVL
TSPLIIMATPLLIYFWLVKKKREKSEKEFGNKEIKD Run BLAST on NCBI transcript from alignment at scaffold_71:1194686..1199397+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072142 ID=TCONS_00072142|Name=TCONS_00072142|organism=Clytia hemisphaerica|type=transcript|length=4712bp|location=Sequence derived from alignment at scaffold_71:1194686..1199397+ (Clytia hemisphaerica)
ttttttaataagcaacttTCAAATGAGATCCTGACAAGCTTATCAGAAAT
GATAGAATTTTGAATGAAACTGAAATTACTACTGGATATGAAAGAAATGA
GAAAATTGAAAGgattacaaaataaaaatgaaaatcttcgCCAAACATCG
CTTTATGAGAGTTTCGGACACCTTCCAGAGCTCGTGTTGTTCTTTGCGAG
TTTAGGGAGTCATATAAGTGGCTCAGCATGCCACTACTACAAGTACTTTT
ATTTCTCGgaaagaagaaattttcaattcgATTTTCGGAATCATAAACAG
ACGTGTGCCAAACATTTGAATACCACCCAAAGCAAACAACAGACAATGGT
AAGTTGTCATTATTGTCTTTTCTGACttgagattttttaaaccgGTCAGA
GAGGGGAGACGACCATAGAtatataaagcccgaagggctagatataaagc
ttttgctgaaaagtgtgccgtggttaggtagaaatcctacctaagtcacg
tgacattacaatagaatttcagcgatgACCAATTAGAAGCtttgcgggtt
ttcgaaaaaaataacaacactattctttccgatattcactttttttttgc
ctgcgatggcttaaagcccgacatctagcccttcgggctttataaatcta
tggagaCGACGTGATAAgtttgctatttataaatcatatttCATCGCAGA
GGTTTCCGTACGGGAATCTTTTATCACATAGACAATGCACATAGTAtgta
ctacgaaacgataaacgtaaaatacactctggtacagagtaggtATGCAC
ATACCGGACCTCCGAACTGGttccattttttaattttactgatAGACGTG
ATCTTTTGCGAGctctatcagaatcataaaaagtgAATTAAGGGCTGTGT
TTGTGTTTGGCTCAAAGAATTCAAGTAGGCAAGGCCAGAAACTTCTTTGG
TTATCCTGACAAAAACTTGAACCTGTATTCATCTATACCATTGCGCCTAT
ACTTATTGAACAGTACATAATTCCTTTTTTACCACCTTCGACCCCAGGCC
TTACCtgacccccttacgctattgataattctgatggacgcgttgagtAA
ACGATCCCTCCGATTTTACAGCACTGGCCTCGTTATGTCGCAGATTCGTT
TAACGGCCATGGCTCACGAGGGTGATCTATATACTGAAATGCAACTAATA
TTCCCAAATAATCATtaatattttaagactttgttTCATTATCTCAGGTT
CAAAGTGACatgtcaagttttcaaatcatcGACATCTACTTCGGAATGGT
TCCAACAATCCTGGCGTGTTTGTTTCTCGGACCAATATCCGATCGAGTAG
GACGCAAACCCATCATAAAAATCGGATTAATCGGAATGATTTTGACTCAA
ATTATGCATCTAGCAGTCATTCATATGGATTGGCCGATATGGGTGTTTTA
TTTGGTGACGCTAATGCGTTCTATAAGTGGAGGAGAGTTGGGAATTCGAA
TCGCAGCTATGGCTTATGTTGTTGATATTTGCAAGGAAACGAAATCGCTG
GCTTGGAAACTAGGTAAATTTGTGTTGGTTGGGTTAAGTATGCTTTAAGA
ATcagtagaaaattattttgttttgttctacAGCACCAATAAAAATCACC
AACGAAAAAACCTCGAGTGCTCTCAAGGTTAATAGACACTTTATCGCTTA
TTATCGAATAATATAATAAGAATCCGTCCAGTGAGTAGTTTAATTAACGC
TAAATTGCCGACATTGTGGTTATGAGAATTCTGCGATTCTGACTAACTAA
AGATACATTCTTCTGTTTTTTAGCAACACTACAGTGCGTTGAACTATTAG
GTGCTATGATCAGTTCGTACACTAGTGGACCCCTCATTCAAAATACTGGG
TTCCAATTCCCAATAATGCTTAGTCTAGCTTTACAAATCACTCCTATGGT
ATACACTGTGTGCTTCTTGAAGGAATCCTACAAAATGTGTGAGAAAGATC
GGCTACCGGCAAAAGAGATTCTCAAACAACCGCTACATTTGATTACAGTA
TTCACCAAACAGCGAAAGACTCGAAAAGAACTATACTTGTTGTTTGCTGT
TTTTATTATGTTATCTGAAACGACTCACGCCTTTGATAGTGGTGGTGCTT
TATTTTTGCTTGGTCAGCCATTTTGTATGCCACCAAATTTATTGAGTTAC
TTGCATGGCATGAAAATAACTTTATCTGTTACTGGACTTTTGTTTAGTAC
CAAACTATTGGCCAAATACCTTTCCAGTTTGACACTTTGTTTAGTTTCAA
TTTTTGTCACAATTATTGATCGATCTTCAATGGTGGTCATTGAAACTACA
TTGATGGTTTTTCTTTGTAAGTATAAATTTACTAGCTTTGTCTCCCCCCT
TTTGGATATTTGCACCAAGACCGAAttttaaatttctgaaaaatgaaatt
catttGTAAAAGTATACCTTAGATAGAATCTACtctcataaaaaaacttg
ataaaatcttaaaatcgcgTTCCAAAGAGCAACTTACAGTACCTTTTACC
GAATACTATCAGAAGACTGATCTCTGTGAGGGAATGGCtgtgaatttgaa
aatcacCATACCAATCTTGTCAATCTCTTTATAGGTATTTTGAGCCtata
tttgatatattttgcatatttttcttATAGTTGGAGGATTGAGATTTTTC
GAAGGATGGTATTCACCGATTCTTCGTTCCTTCATTTCGTCATCTGTAAA
CGAAGCGGAGCAAGGTGAGTAAGTTGATTCGGGTTGCTCAGAATGTTATC
CCGAGTTATTCAAATAACTTTCATCCCTGGTTGTTATAAGGGAAGTTTAT
TTGAGCTACTCCTGAAGCACTAGGTTTCAGTCGCGTCAAAGTTGATAAAA
CgtgtcaaaaataaaagaacattCTTCCTAAAGTACTATACCTTACATTA
CTGCATTGTAGTCTTGAGCTTTAAGTGTTTAAACATGACCTTCTTTACAT
TATCCTATCTATGACTTGCAAGTAGTTGTTAGATGGGATGTTAGTGGAGC
TAAAACTAAAACGCTGGGCTATATGGCTATATTGTAGTCGTGGTCAAAGT
GGTTTACACTATCCTATCTATAACTTTAGGttccatcctttgtttacttt
caatCATGGTAACTATTCTGACGTCCATcacaaaaacaatatttttgaca
ttatacACCAAACTTTTGCAACATGGAAAAGTTCGTTGGTTTTTTGTGCT
GACGTCACCATTAATCATAATGGCCACACCCTTATTGATGTAAGTAGCCT
ATATGTCGCTtaaattaaaaatctttttcatgcGTATTCTTTACATTGAA
ACATCCTTGtctcaatatattttattgCTGAAGAAAGATCACTAAAATca
ccgtgtcacagacccgatcactagagaaattggcaaaaatgacCTGAAGT
TTTTAACCTTACTGTAAAATACGTTTTGTTAAATGATAATTTTGCACTTC
AAAACTATCCCCATTTACATTAGCGTTTTTTTGAGCTAGAAGCAATAGAA
GAATAAGTTTTCATTCACACTGAGCGAAAAAGTTCCAACGGGgcactgag
aaaggggtgtactagactagtaaaccacgtcttTGTATTTCGCTTACACT
TGCAATGGGCTCACTACGCTCGCTGAATACAAGCAATAGTCTTCCCAAAC
CACTCCCCCACGGCAATTTCTATTTCATAAGAAAtctttataagcactat
tccccgcgttcctgtgtctaAAGAAAGACAGACGTTTGCTAGTCTAGGGG
TGTACTAAAGGAAGGAAATTAATTGCATAGtttaaatctttgaaatttAA
CTTGCCTGTTACAATAACAAAGCAGCAATGTTGGTATTAAGATCATTTCA
TGTTTTGTGGTCTATTTCGTTCTTTCATTTATAGGGCTTTGATGaaataa
aattgctttaaatgcGTGACAGGATGACAGCTTGCTTACATAGATCTCTC
ATTTGATTTTCCTTTCAGTTTAAGATTGTACATTTTGATAACATTGAAAG
TTTTCTTAAGAGCTTACTGATCCATTAAGTAATGAAAAAGGATTTCGATG
AGATTTGTAGAAAATTTGAGTGGGCTAGAAAATCGCTATCCGAAATCGtg
gtttttataaataaaacataaatataatataacaCGCGTTtcgtatacac
cttttcgaccgtagtcgtgcggtcaggcgcgtgccacttaattatttaat
catCCCCTTAAACTCGATCCgatccttattttttttttgacacatttttc
tattgtctaggACTCTATAGGACTGGGACGGtcttagtgggataaagcgg
acaaaaaaatgcccgcgcggcaattggcggctatggTCGAAAAGGTTATT
GCCTTATCATGTATATGTTTTGGCTGTCAGTTATAGTGACCCATACAATT
tgccaaaatggaaaaatgagctaaaattgcttgtcGCACGGCCactttct
gttttgtttattttctttcgtGCAaattacatgggatcaaagcaaATGCT
ATGCAAAAATCTTATTCGAAATCCGTGTATTGTTTTTAACAACTTGCCGT
TTTCGatatattttcatactatttatttttcagatatttctggctggtga
agaagaaaagagaaaaatcagaaaaagaatTTGGCAATAAGGAAATTAAA
GATTGATTATAT Coding sequence (CDS) from alignment at scaffold_71:1194686..1199397+ >TCONS_00072142 ID=TCONS_00072142|Name=TCONS_00072142|organism=Clytia hemisphaerica|type=CDS|length=8766bp|location=Sequence derived from alignment at scaffold_71:1194686..1199397+ (Clytia hemisphaerica)
ATGAAACTGAAATTACTACTGGATATGAAAGAAATGAGAAAATTGAAAGg
attacaaaataaaaatgaaaatcttcgCCAAACATCGCTTTATGAGAGTT
TCGGACACCTTCCAGAGCTCGTGTTGTTCTTTGCGAGTTTAGGGAGTCAT
ATAAGTGGCTCAGCATGCCACTACTACAAGTACTTTTATTTCTCGgaaag
aagaaattttcaattcgATTTTCGGAATCATAAACAGACGTGTGCCAAAC
ATTTGAATACCACCCAAAGCAAACAACAGACAATGGTTCAAAGTGACatg
tcaagttttcaaatcatcGACATCTACTTCGGAATGGTTCCAACAATCCT
GGCGTGTTTGTTTCTCGGACCAATATCCGATCGAGTAGGACGCAAACCCA
TCATAAAAATCGGATTAATCGGAATGATTTTGACTCAAATTATGCATCTA
GCAGTCATTCATATGGATTGGCCGATATGGGTGTTTTATTTGGTGACGCT
AATGCGTTCTATAAGTGGAGGAGAGTTGGGAATTCGAATCGCAGCTATGG
CTTATGTTGTTGATATTTGCAAGGAAACGAAATCGCTGGCTTGGAAACTA
GCAACACTACAGTGCGTTGAACTATTAGGTGCTATGATCAGTTCGTACAC
TAGTGGACCCCTCATTCAAAATACTGGGTTCCAATTCCCAATAATGCTTA
GTCTAGCTTTACAAATCACTCCTATGGTATACACTGTGTGCTTCTTGAAG
GAATCCTACAAAATGTGTGAGAAAGATCGGCTACCGGCAAAAGAGATTCT
CAAACAACCGCTACATTTGATTACAGTATTCACCAAACAGCGAAAGACTC
GAAAAGAACTATACTTGTTGTTTGCTGTTTTTATTATGTTATCTGAAACG
ACTCACGCCTTTGATAGTGGTGGTGCTTTATTTTTGCTTGGTCAGCCATT
TTGTATGCCACCAAATTTATTGAGTTACTTGCATGGCATGAAAATAACTT
TATCTGTTACTGGACTTTTGTTTAGTACCAAACTATTGGCCAAATACCTT
TCCAGTTTGACACTTTGTTTAGTTTCAATTTTTGTCACAATTATTGATCG
ATCTTCAATGGTGGTCATTGAAACTACATTGATGGTTTTTCTTTTTGGAG
GATTGAGATTTTTCGAAGGATGGTATTCACCGATTCTTCGTTCCTTCATT
TCGTCATCTGTAAACGAAGCGGAGCAAGGttccatcctttgtttactttc
aatCATGGTAACTATTCTGACGTCCATcacaaaaacaatatttttgacat
tatacACCAAACTTTTGCAACATGGAAAAGTTCGTTGGTTTTTTGTGCTG
ACGTCACCATTAATCATAATGGCCACACCCTTATTGATatatttctggct
ggtgaagaagaaaagagaaaaatcagaaaaagaatTTGGCAATAAGGAAA
TTAAAGATTGAATGAAACTGAAATTACTACTGGATATGAAAGAAATGAGA
AAATTGAAAGgattacaaaataaaaatgaaaatcttcgCCAAACATCGCT
TTATGAGAGTTTCGGACACCTTCCAGAGCTCGTGTTGTTCTTTGCGAGTT
TAGGGAGTCATATAAGTGGCTCAGCATGCCACTACTACAAGTACTTTTAT
TTCTCGgaaagaagaaattttcaattcgATTTTCGGAATCATAAACAGAC
GTGTGCCAAACATTTGAATACCACCCAAAGCAAACAACAGACAATGGTTC
AAAGTGACatgtcaagttttcaaatcatcGACATCTACTTCGGAATGGTT
CCAACAATCCTGGCGTGTTTGTTTCTCGGACCAATATCCGATCGAGTAGG
ACGCAAACCCATCATAAAAATCGGATTAATCGGAATGATTTTGACTCAAA
TTATGCATCTAGCAGTCATTCATATGGATTGGCCGATATGGGTGTTTTAT
TTGGTGACGCTAATGCGTTCTATAAGTGGAGGAGAGTTGGGAATTCGAAT
CGCAGCTATGGCTTATGTTGTTGATATTTGCAAGGAAACGAAATCGCTGG
CTTGGAAACTAGCAACACTACAGTGCGTTGAACTATTAGGTGCTATGATC
AGTTCGTACACTAGTGGACCCCTCATTCAAAATACTGGGTTCCAATTCCC
AATAATGCTTAGTCTAGCTTTACAAATCACTCCTATGGTATACACTGTGT
GCTTCTTGAAGGAATCCTACAAAATGTGTGAGAAAGATCGGCTACCGGCA
AAAGAGATTCTCAAACAACCGCTACATTTGATTACAGTATTCACCAAACA
GCGAAAGACTCGAAAAGAACTATACTTGTTGTTTGCTGTTTTTATTATGT
TATCTGAAACGACTCACGCCTTTGATAGTGGTGGTGCTTTATTTTTGCTT
GGTCAGCCATTTTGTATGCCACCAAATTTATTGAGTTACTTGCATGGCAT
GAAAATAACTTTATCTGTTACTGGACTTTTGTTTAGTACCAAACTATTGG
CCAAATACCTTTCCAGTTTGACACTTTGTTTAGTTTCAATTTTTGTCACA
ATTATTGATCGATCTTCAATGGTGGTCATTGAAACTACATTGATGGTTTT
TCTTTTTGGAGGATTGAGATTTTTCGAAGGATGGTATTCACCGATTCTTC
GTTCCTTCATTTCGTCATCTGTAAACGAAGCGGAGCAAGGttccatcctt
tgtttactttcaatCATGGTAACTATTCTGACGTCCATcacaaaaacaat
atttttgacattatacACCAAACTTTTGCAACATGGAAAAGTTCGTTGGT
TTTTTGTGCTGACGTCACCATTAATCATAATGGCCACACCCTTATTGATa
tatttctggctggtgaagaagaaaagagaaaaatcagaaaaagaatTTGG
CAATAAGGAAATTAAAGATTGAATGAAACTGAAATTACTACTGGATATGA
AAGAAATGAGAAAATTGAAAGgattacaaaataaaaatgaaaatcttcgC
CAAACATCGCTTTATGAGAGTTTCGGACACCTTCCAGAGCTCGTGTTGTT
CTTTGCGAGTTTAGGGAGTCATATAAGTGGCTCAGCATGCCACTACTACA
AGTACTTTTATTTCTCGgaaagaagaaattttcaattcgATTTTCGGAAT
CATAAACAGACGTGTGCCAAACATTTGAATACCACCCAAAGCAAACAACA
GACAATGGTTCAAAGTGACatgtcaagttttcaaatcatcGACATCTACT
TCGGAATGGTTCCAACAATCCTGGCGTGTTTGTTTCTCGGACCAATATCC
GATCGAGTAGGACGCAAACCCATCATAAAAATCGGATTAATCGGAATGAT
TTTGACTCAAATTATGCATCTAGCAGTCATTCATATGGATTGGCCGATAT
GGGTGTTTTATTTGGTGACGCTAATGCGTTCTATAAGTGGAGGAGAGTTG
GGAATTCGAATCGCAGCTATGGCTTATGTTGTTGATATTTGCAAGGAAAC
GAAATCGCTGGCTTGGAAACTAGCAACACTACAGTGCGTTGAACTATTAG
GTGCTATGATCAGTTCGTACACTAGTGGACCCCTCATTCAAAATACTGGG
TTCCAATTCCCAATAATGCTTAGTCTAGCTTTACAAATCACTCCTATGGT
ATACACTGTGTGCTTCTTGAAGGAATCCTACAAAATGTGTGAGAAAGATC
GGCTACCGGCAAAAGAGATTCTCAAACAACCGCTACATTTGATTACAGTA
TTCACCAAACAGCGAAAGACTCGAAAAGAACTATACTTGTTGTTTGCTGT
TTTTATTATGTTATCTGAAACGACTCACGCCTTTGATAGTGGTGGTGCTT
TATTTTTGCTTGGTCAGCCATTTTGTATGCCACCAAATTTATTGAGTTAC
TTGCATGGCATGAAAATAACTTTATCTGTTACTGGACTTTTGTTTAGTAC
CAAACTATTGGCCAAATACCTTTCCAGTTTGACACTTTGTTTAGTTTCAA
TTTTTGTCACAATTATTGATCGATCTTCAATGGTGGTCATTGAAACTACA
TTGATGGTTTTTCTTTTTGGAGGATTGAGATTTTTCGAAGGATGGTATTC
ACCGATTCTTCGTTCCTTCATTTCGTCATCTGTAAACGAAGCGGAGCAAG
GttccatcctttgtttactttcaatCATGGTAACTATTCTGACGTCCATc
acaaaaacaatatttttgacattatacACCAAACTTTTGCAACATGGAAA
AGTTCGTTGGTTTTTTGTGCTGACGTCACCATTAATCATAATGGCCACAC
CCTTATTGATatatttctggctggtgaagaagaaaagagaaaaatcagaa
aaagaatTTGGCAATAAGGAAATTAAAGATTGAATGAAACTGAAATTACT
ACTGGATATGAAAGAAATGAGAAAATTGAAAGgattacaaaataaaaatg
aaaatcttcgCCAAACATCGCTTTATGAGAGTTTCGGACACCTTCCAGAG
CTCGTGTTGTTCTTTGCGAGTTTAGGGAGTCATATAAGTGGCTCAGCATG
CCACTACTACAAGTACTTTTATTTCTCGgaaagaagaaattttcaattcg
ATTTTCGGAATCATAAACAGACGTGTGCCAAACATTTGAATACCACCCAA
AGCAAACAACAGACAATGGTTCAAAGTGACatgtcaagttttcaaatcat
cGACATCTACTTCGGAATGGTTCCAACAATCCTGGCGTGTTTGTTTCTCG
GACCAATATCCGATCGAGTAGGACGCAAACCCATCATAAAAATCGGATTA
ATCGGAATGATTTTGACTCAAATTATGCATCTAGCAGTCATTCATATGGA
TTGGCCGATATGGGTGTTTTATTTGGTGACGCTAATGCGTTCTATAAGTG
GAGGAGAGTTGGGAATTCGAATCGCAGCTATGGCTTATGTTGTTGATATT
TGCAAGGAAACGAAATCGCTGGCTTGGAAACTAGCAACACTACAGTGCGT
TGAACTATTAGGTGCTATGATCAGTTCGTACACTAGTGGACCCCTCATTC
AAAATACTGGGTTCCAATTCCCAATAATGCTTAGTCTAGCTTTACAAATC
ACTCCTATGGTATACACTGTGTGCTTCTTGAAGGAATCCTACAAAATGTG
TGAGAAAGATCGGCTACCGGCAAAAGAGATTCTCAAACAACCGCTACATT
TGATTACAGTATTCACCAAACAGCGAAAGACTCGAAAAGAACTATACTTG
TTGTTTGCTGTTTTTATTATGTTATCTGAAACGACTCACGCCTTTGATAG
TGGTGGTGCTTTATTTTTGCTTGGTCAGCCATTTTGTATGCCACCAAATT
TATTGAGTTACTTGCATGGCATGAAAATAACTTTATCTGTTACTGGACTT
TTGTTTAGTACCAAACTATTGGCCAAATACCTTTCCAGTTTGACACTTTG
TTTAGTTTCAATTTTTGTCACAATTATTGATCGATCTTCAATGGTGGTCA
TTGAAACTACATTGATGGTTTTTCTTTTTGGAGGATTGAGATTTTTCGAA
GGATGGTATTCACCGATTCTTCGTTCCTTCATTTCGTCATCTGTAAACGA
AGCGGAGCAAGGttccatcctttgtttactttcaatCATGGTAACTATTC
TGACGTCCATcacaaaaacaatatttttgacattatacACCAAACTTTTG
CAACATGGAAAAGTTCGTTGGTTTTTTGTGCTGACGTCACCATTAATCAT
AATGGCCACACCCTTATTGATatatttctggctggtgaagaagaaaagag
aaaaatcagaaaaagaatTTGGCAATAAGGAAATTAAAGATTGAATGAAA
CTGAAATTACTACTGGATATGAAAGAAATGAGAAAATTGAAAGgattaca
aaataaaaatgaaaatcttcgCCAAACATCGCTTTATGAGAGTTTCGGAC
ACCTTCCAGAGCTCGTGTTGTTCTTTGCGAGTTTAGGGAGTCATATAAGT
GGCTCAGCATGCCACTACTACAAGTACTTTTATTTCTCGgaaagaagaaa
ttttcaattcgATTTTCGGAATCATAAACAGACGTGTGCCAAACATTTGA
ATACCACCCAAAGCAAACAACAGACAATGGTTCAAAGTGACatgtcaagt
tttcaaatcatcGACATCTACTTCGGAATGGTTCCAACAATCCTGGCGTG
TTTGTTTCTCGGACCAATATCCGATCGAGTAGGACGCAAACCCATCATAA
AAATCGGATTAATCGGAATGATTTTGACTCAAATTATGCATCTAGCAGTC
ATTCATATGGATTGGCCGATATGGGTGTTTTATTTGGTGACGCTAATGCG
TTCTATAAGTGGAGGAGAGTTGGGAATTCGAATCGCAGCTATGGCTTATG
TTGTTGATATTTGCAAGGAAACGAAATCGCTGGCTTGGAAACTAGCAACA
CTACAGTGCGTTGAACTATTAGGTGCTATGATCAGTTCGTACACTAGTGG
ACCCCTCATTCAAAATACTGGGTTCCAATTCCCAATAATGCTTAGTCTAG
CTTTACAAATCACTCCTATGGTATACACTGTGTGCTTCTTGAAGGAATCC
TACAAAATGTGTGAGAAAGATCGGCTACCGGCAAAAGAGATTCTCAAACA
ACCGCTACATTTGATTACAGTATTCACCAAACAGCGAAAGACTCGAAAAG
AACTATACTTGTTGTTTGCTGTTTTTATTATGTTATCTGAAACGACTCAC
GCCTTTGATAGTGGTGGTGCTTTATTTTTGCTTGGTCAGCCATTTTGTAT
GCCACCAAATTTATTGAGTTACTTGCATGGCATGAAAATAACTTTATCTG
TTACTGGACTTTTGTTTAGTACCAAACTATTGGCCAAATACCTTTCCAGT
TTGACACTTTGTTTAGTTTCAATTTTTGTCACAATTATTGATCGATCTTC
AATGGTGGTCATTGAAACTACATTGATGGTTTTTCTTTTTGGAGGATTGA
GATTTTTCGAAGGATGGTATTCACCGATTCTTCGTTCCTTCATTTCGTCA
TCTGTAAACGAAGCGGAGCAAGGttccatcctttgtttactttcaatCAT
GGTAACTATTCTGACGTCCATcacaaaaacaatatttttgacattatacA
CCAAACTTTTGCAACATGGAAAAGTTCGTTGGTTTTTTGTGCTGACGTCA
CCATTAATCATAATGGCCACACCCTTATTGATatatttctggctggtgaa
gaagaaaagagaaaaatcagaaaaagaatTTGGCAATAAGGAAATTAAAG
ATTGAATGAAACTGAAATTACTACTGGATATGAAAGAAATGAGAAAATTG
AAAGgattacaaaataaaaatgaaaatcttcgCCAAACATCGCTTTATGA
GAGTTTCGGACACCTTCCAGAGCTCGTGTTGTTCTTTGCGAGTTTAGGGA
GTCATATAAGTGGCTCAGCATGCCACTACTACAAGTACTTTTATTTCTCG
gaaagaagaaattttcaattcgATTTTCGGAATCATAAACAGACGTGTGC
CAAACATTTGAATACCACCCAAAGCAAACAACAGACAATGGTTCAAAGTG
ACatgtcaagttttcaaatcatcGACATCTACTTCGGAATGGTTCCAACA
ATCCTGGCGTGTTTGTTTCTCGGACCAATATCCGATCGAGTAGGACGCAA
ACCCATCATAAAAATCGGATTAATCGGAATGATTTTGACTCAAATTATGC
ATCTAGCAGTCATTCATATGGATTGGCCGATATGGGTGTTTTATTTGGTG
ACGCTAATGCGTTCTATAAGTGGAGGAGAGTTGGGAATTCGAATCGCAGC
TATGGCTTATGTTGTTGATATTTGCAAGGAAACGAAATCGCTGGCTTGGA
AACTAGCAACACTACAGTGCGTTGAACTATTAGGTGCTATGATCAGTTCG
TACACTAGTGGACCCCTCATTCAAAATACTGGGTTCCAATTCCCAATAAT
GCTTAGTCTAGCTTTACAAATCACTCCTATGGTATACACTGTGTGCTTCT
TGAAGGAATCCTACAAAATGTGTGAGAAAGATCGGCTACCGGCAAAAGAG
ATTCTCAAACAACCGCTACATTTGATTACAGTATTCACCAAACAGCGAAA
GACTCGAAAAGAACTATACTTGTTGTTTGCTGTTTTTATTATGTTATCTG
AAACGACTCACGCCTTTGATAGTGGTGGTGCTTTATTTTTGCTTGGTCAG
CCATTTTGTATGCCACCAAATTTATTGAGTTACTTGCATGGCATGAAAAT
AACTTTATCTGTTACTGGACTTTTGTTTAGTACCAAACTATTGGCCAAAT
ACCTTTCCAGTTTGACACTTTGTTTAGTTTCAATTTTTGTCACAATTATT
GATCGATCTTCAATGGTGGTCATTGAAACTACATTGATGGTTTTTCTTTT
TGGAGGATTGAGATTTTTCGAAGGATGGTATTCACCGATTCTTCGTTCCT
TCATTTCGTCATCTGTAAACGAAGCGGAGCAAGGttccatcctttgttta
ctttcaatCATGGTAACTATTCTGACGTCCATcacaaaaacaatattttt
gacattatacACCAAACTTTTGCAACATGGAAAAGTTCGTTGGTTTTTTG
TGCTGACGTCACCATTAATCATAATGGCCACACCCTTATTGATatatttc
tggctggtgaagaagaaaagagaaaaatcagaaaaagaatTTGGCAATAA
GGAAATTAAAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072142-exon-scaffold_71-1491911889:1194686..1195033 | TCONS_00072142-exon-scaffold_71-1491911889:1194686..1195033 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1510915933:1194686..1195033 | TCONS_00072142-exon-scaffold_71-1510915933:1194686..1195033 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1575043694:1194686..1195033 | TCONS_00072142-exon-scaffold_71-1575043694:1194686..1195033 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1491911889:1195933..1196248 | TCONS_00072142-exon-scaffold_71-1491911889:1195933..1196248 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1510915933:1195933..1196248 | TCONS_00072142-exon-scaffold_71-1510915933:1195933..1196248 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1575043694:1195933..1196248 | TCONS_00072142-exon-scaffold_71-1575043694:1195933..1196248 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1491911889:1196509..1197051 | TCONS_00072142-exon-scaffold_71-1491911889:1196509..1197051 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1510915933:1196509..1197051 | TCONS_00072142-exon-scaffold_71-1510915933:1196509..1197051 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1575043694:1196509..1197051 | TCONS_00072142-exon-scaffold_71-1575043694:1196509..1197051 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1491911889:1197366..1197449 | TCONS_00072142-exon-scaffold_71-1491911889:1197366..1197449 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1510915933:1197366..1197449 | TCONS_00072142-exon-scaffold_71-1510915933:1197366..1197449 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1575043694:1197366..1197449 | TCONS_00072142-exon-scaffold_71-1575043694:1197366..1197449 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1491911889:1197815..1197974 | TCONS_00072142-exon-scaffold_71-1491911889:1197815..1197974 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1510915933:1197815..1197974 | TCONS_00072142-exon-scaffold_71-1510915933:1197815..1197974 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1575043694:1197815..1197974 | TCONS_00072142-exon-scaffold_71-1575043694:1197815..1197974 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1491911889:1199319..1199397 | TCONS_00072142-exon-scaffold_71-1491911889:1199319..1199397 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1510915933:1199319..1199397 | TCONS_00072142-exon-scaffold_71-1510915933:1199319..1199397 | Clytia hemisphaerica | exon |
| TCONS_00072142-exon-scaffold_71-1575043694:1199319..1199397 | TCONS_00072142-exon-scaffold_71-1575043694:1199319..1199397 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:1194686..1199397 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00072142 vs. Swiss-Prot (Human)
Match: S46A3 (Solute carrier family 46 member 3 OS=Homo sapiens GN=SLC46A3 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 3.356e-16 Identity = 95/421 (22.57%), Postives = 176/421 (41.81%), Query Frame = 1
Query: 178 ELVLFFASLGSHISGSACHYYKYFY-FSERRNFQFDFRNHKQTCAKHLNTTQSKQQTMVQSDMSSFQI-IDIYFGMVPTILACLFLGPISDRVGRKPIIKIGLIGMILTQIMHLAVIHMDWPIWVFYLVTLMRSISGGELGIRIAAMAYVVDICKETKSLAWKLATLQCVELLGAMISSYTSGPLIQNTGFQFP---IMLSLALQITPMVYTVCFLKESYKMCEKDR--LPAKEILKQPLHLITVFTKQRKTRKELYLLFAVFIMLSETTHAFDSGG-----ALFLLGQPFCMPPNLLSYLHGMKITLSVTGLLFSTKLLAKYLSSLTLCLVSIFVTIIDRSSMVVIETTLMVFLFGGLRFFEGWYSPILRSFISSSVNEAEQGSILCLLSIMVTILTSITKTIFLTLYTKLLQHGKVRWF 1404
E +F ++ ++G Y Y + E N+ F ++ C K+ ++ Q VQ +S F + +DI G++P +++ L ISD GRK + + +G + T + + + +P + T + + G A AY+VD CKE K ++A + + L ++ +SG I+ GF++ I +SLA+ ++Y + FL + K C + E K + + K ++ L +F ++ T+ F G L+ L P C + Y + +T L L + + + + + IF T+ + TTLM+FL F +LRS +S V EQG++ ++ + T+ + F +Y+ V W+
Sbjct: 7 EPAIFLSAFAMTLTGPLTTQYVYRRIWEETGNYTFSSDSNISECEKNKSSPIFAFQEEVQKKVSRFNLQMDIS-GLIPGLVSTFILLSISDHYGRKFPMILSSVGALATSVWLCLLCYFAFPFQLLIASTFIGAFCGNYTTFWGACFAYIVDQCKEHKQKTIRIAIIDFLLGLVTGLTGLSSGYFIRELGFEWSFLIIAVSLAVN---LIYILFFLGDPVKECSSQNVTMSCSEGFKNLFYRTYMLFKNASGKRRFLLCLLLFTVI---TYFFVVIGIAPIFILYELDSPLCWNEVFIGYGSALGSASFLTSFL-GIWLFSYCMEDIHMAFIGIFTTMTGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYS-----ATVAWY 414
The following BLAST results are available for this feature:
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