TCONS_00072147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072147
Unique NameTCONS_00072147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072147 ID=TCONS_00072147|Name=TCONS_00072147|organism=Clytia hemisphaerica|type=transcript|length=800bp
ATTTGTTTTCACATTCTaactgaaattttcttttctttttagtaAAATTT
ATTCGAAATATTCTTTAGAATTTAAgtgaatttaaaaagaaatggCAATC
AGAAGACTTGCTCAACAAACTTTAAGGCTAAGACCACAGGGTACAATTAC
ATGCCTATTCCATCAAGAGGCAAAAGTGGAACTTCCTAAAGAAAATTCAT
CTGAGTATACTAGTGATGGTGAAAAAATTCATTGTGGTTTAAAATTCACT
CAAGAAGGTAGCAGAACTGAAGAGGAGCTAGCTTTCATCCTTGAATCAGC
ACGTGCTAAGGCTTTTGCAGAAAGTACTACGAGATGTGTTAGTATCAAAT
CCGGTGATTAGCTGATGGATAATTTGACTGATTATGTCCACTATatattt
gtaattttcttttgaaagcaTTTAAACTCTTAATTAtggagatttttttt
taatcagaaaattttgtaaatagaatcgtttttaaagttttattgaGTTA
CTGTTTACTGATATTGGATAAGTGCTATCGTGGTACTCAGGCAAAACAGT
GACCGTTTAGTgtacttttttcaaagaatgttttaaaatttgttGAATAT
CAACTAAGATTGAGGAATTTCTATTTCTAAGGGTGAATTTTTTATTAAAC
AGCCGTTAACTCGAAAACCTAGTAAATGCCCATgttgtttgatttatttt
tcagtGTCATATGTTCACGTTACTGTTGATTTTCATTGTATAAAATTgtg
taaatattttgttttggttattaatttttaaatttgatgttGAAGTAGGC
Run BLAST on NCBI

transcript from alignment at scaffold_71:191422..193435-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072147 ID=TCONS_00072147|Name=TCONS_00072147|organism=Clytia hemisphaerica|type=transcript|length=2014bp|location=Sequence derived from alignment at scaffold_71:191422..193435- (Clytia hemisphaerica)
ATTTGTTTTCACATTCTAACTGAAATTTTCTTTTCTTTTTAGTAAAATTT
ATTCGAAATATTCTTTAGAATTTAAGTGAATTTAAAAAGAAATGGCAATC
AGAAGACTTGCTCAACAAACTTTAAGGCTAAGACCACAGGGTACAATTAC
ATGCCTATTCCATCAAGAGGGTAAGTTCTTTTTGCTTTTACATAGTGTGA
TATTGGATATTGATATTGATTTAAGTATTTTCGAAGGTTTTTATTCTGAT
GATTTTAAAATCATTTATTGCGCTAACAATACCTATAAGTATAAAAACAA
TTATTTTTTGAAACGTTTACACAGATTTAATAAATCATTTAAAAAAATTA
TACTCTTGGATCTTTCAAATCCCTCAGTTTTACACACAATTGAATTGTCC
AAGGTCTGTTCTTCTGTAATATTTTCATTACATGATGATACAGAGATTTT
AGCAGAGTTTAAATTGATGTATGGCCACTTGTTAAATTAAAAGGAATGTT
ATGAAACTCAAAGATGAGGACTTTATCTAAATAAAACCTTGCTTTAGCTT
TTAATCGTATTTACACACAATAGAGATTATGACATCTATTTAGCACAATA
AAAGATTTGAATTAAGCTTAAAGACGTCAAAATCTACCCTAATAGCCTTA
TTGTGGTCGATGTAAATAGAGACTAGACACTAGTTAGCAGTAACTATGGT
AATAATCTTTAGCTGTATACATTTTTATCGTACTATCACCCTTATTTATC
ACTATGATTTTAATTTAATTATAGCAAAAGTGGAACTTCCTAAAGAAAAT
TCATCTGAGTATACTAGTGATGGTGAAAAAATTCATTGTGGTTTAAAATT
CACTCAAGAAGGTATATTTATGCAAATTAGGTGGATTCATTTTCCATTGT
TGTTTCAGTTGATTAAAAAGTTAGATTGACATGTGATGTGATTTAATGAA
ATGTTGCCAATGCCATTATGACTTCCTACACGTTATAATCATGTTTTCAA
AGCATGGTTATAAAATATATCAGATTATGAGGTGACTTTTTAATCACACC
TTAATTAAAGTTACTTTTTAGTCACACAATAGATTACACTGTTTACGTGA
ATGATAAGGGGATAAGAGATCTTATTTTGTATCTTTGGAAAAAACTTTAT
CTATTAGCTATAATAACCCTAAAAGGGGGTCCCTTTTAAGGTTATAGCTT
ATAGATATTCATCGAGATTTAGATGTTTTAAGAAAAAGTACCAGTTTTAC
AAATGAACATAGAGAATTTTTTTCTGACATCAAAAATTCTGTAAATATTA
AAAAGTTGAATAAAAAAATGAATAAAACGAAAGAAAAATAGCATGAACAT
CAAATCAAAGCACTAATGATGATTTGGTCATTTCAAAGAGTTTTTTCTTG
GATTTAGCCTATGTAACGTTTTTTATATTGCTCCTTTATTGATGTAAACA
TACCATTATTATTTGTTGTAGGTAGCAGAACTGAAGAGGAGCTAGCTTTC
ATCCTTGAATCAGCACGTGCTAAGGCTTTTGCAGAAAGTACTACGAGATG
TGTTAGTATCAAATCCGGTGATTAGCTGATGGATAATTTGACTGATTATG
TCCACTATATATTTGTAATTTTCTTTTGAAAGCATTTAAACTCTTAATTA
TGGAGATTTTTTTTTAATCAGAAAATTTTGTAAATAGAATCGTTTTTAAA
GTTTTATTGAGTTACTGTTTACTGATATTGGATAAGTGCTATCGTGGTAC
TCAGGCAAAACAGTGACCGTTTAGTGTACTTTTTTCAAAGAATGTTTTAA
AATTTGTTGAATATCAACTAAGATTGAGGAATTTCTATTTCTAAGGGTGA
ATTTTTTATTAAACAGCCGTTAACTCGAAAACCTAGTAAATGCCCATGTT
GTTTGATTTATTTTTCAGTGTCATATGTTCACGTTACTGTTGATTTTCAT
TGTATAAAATTGTGTAAATATTTTGTTTTGGTTATTAATTTTTAAATTTG
ATGTTGAAGTAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044807XLOC_044807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072147-exon-scaffold_71-1575043694:193266..193435TCONS_00072147-exon-scaffold_71-1575043694:193266..193435Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1575043694:192575..192661TCONS_00072147-exon-scaffold_71-1575043694:192575..192661Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1575043694:191422..191964TCONS_00072147-exon-scaffold_71-1575043694:191422..191964Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1510915933:193266..193435TCONS_00072147-exon-scaffold_71-1510915933:193266..193435Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1510915933:192575..192661TCONS_00072147-exon-scaffold_71-1510915933:192575..192661Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1510915933:191422..191964TCONS_00072147-exon-scaffold_71-1510915933:191422..191964Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1491911889:193266..193435TCONS_00072147-exon-scaffold_71-1491911889:193266..193435Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1491911889:192575..192661TCONS_00072147-exon-scaffold_71-1491911889:192575..192661Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1491911889:191422..191964TCONS_00072147-exon-scaffold_71-1491911889:191422..191964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:191422..193435 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.34267	4.15625	9.37973	8.24564	4.85723	4.09413	10.6506	7.94785	34.8539	41.2297	29.6794	30.5045	51.8215	23.7989	18.2706	23.814	12.618	20.8776	35.6716	59.1635	51.0175	53.6759	13.697	14.0795	12.5681	15.3007	50.6225	31.1856	15.0581	23.4879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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