TCONS_00072192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072192
Unique NameTCONS_00072192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072192 ID=TCONS_00072192|Name=TCONS_00072192|organism=Clytia hemisphaerica|type=transcript|length=747bp
AGGGCCAACCAGGCTTCCAAGGACAGAGAGGAAACCGAGGGCAACCTGGG
CCACCAGGTCCTCGAGGTGCCCCGCCAATTGAAAGTTTGATTCCAAGCAG
CTCATGGAGAGATTATTACAAGGAGAATCCTAACCAGTTTTACcgaGCAG
TTGCAGGGGACTATTTATCTTACCTCAGAGAAGAAGTCGATGATTTGCAA
TATCCACGTGGTACACGCGATAATTCTGCATTGAATTGTCAAGAACTATT
GGATAATCGAAATGATATTCAAAATGGTCATTATTGGATCGATCCAAATC
GAGGTTGTGCTTGGGATGCTTTTGAAACGAAATGTCTTTTCAAAGGAGAT
GCTGGCTACACTTGTATAAAGCCTCAACCCAAAAcgGTGCATCTCCGGAA
ATTTGGCATAACCAGACACCAGGAAATGGTCTTGTCCAAATTTGTGAAGg
tcAAAGCATCAGTACGCCGTCCGCAATTAAATTTCGTCCGATTGTTAGCA
TCAGACGGTTATCAAGATGTGACGTTAAGATGTTTCAGACCACTCTACAA
TATCAAGAACTTCTCGTTTGTTGGTCACAATAAGATCGAGATAAATGGAC
GTGATAGAACACAAGTCAAGATTATCGCAAATTCCTGCAGGAGGGCAAAC
AAGAGACGACTAGGGAGAATCACTTTCCGTATATTCACTGACGGTAATTT
GAATTTGTTCCCTATAAAAGATGTTCGGATCCGATACGAGGCTATTG
Run BLAST on NCBI

transcript from alignment at scaffold_71:780710..789868-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072192 ID=TCONS_00072192|Name=TCONS_00072192|organism=Clytia hemisphaerica|type=transcript|length=9159bp|location=Sequence derived from alignment at scaffold_71:780710..789868- (Clytia hemisphaerica)
AGGGCCAACCAGGCTTCCAAGGACAGAGAGGAAACCGAGGGCAACCTGGG
CCACCAGGTCCTCGAGGTGCCCCGCCAATTGAAAGTTTGATTGTAAGCAC
TGTTCTCTAACTATTTGACTGGATCGGGCTACCCGTTCATCGAGGAAGGG
TGTCTAGATTTAAGAGCTGACTAGTCCGCCATCTTGTTTTCAATTCTGGT
CGTCAACAGCACAACTTGAATGTTTTGAAATTCAAACGTTCGAAAATCTA
AAGTAAATTGGAAAACAACATGTTGGACTAGTCGACTTCAAAACTGTATA
CACTTCCACGGGAAATCTGTGAGCAGTTAGTGTAGCTAGTGAAAACACCC
AAGATTTTTCGGGGTGGTACAGGCTAGTTAAAATTTTAGACGAACAATAG
CGAGTTTATTTATCTAACTCTAGCAACTGAAACAATTGACAATAACCTGC
AAGATAGGGGAAGTCTAAAGAGCTTGCTCGCCGTTTTACTCAGTCAGGAT
CCAAAACATTGATGATAATCAAGATACATAAAATCTCCATAAGGCTATTT
TAGCATGCTAGACAACAAGTTGTAGTTTATACAAACTCATACTATCCCAT
TACAATGCTCTTATTATCGTATAACACCCGTATTACTGTATTAGACATAA
ATGACTCCGTTTACCATAACGTTTAAAAAGGGGTCAAGCTGGAGTTTTTA
CAAGTTCTTTGATGACTCTGTTGGTCGTTAAATGTTGAGACAAACGATTT
TATTACTTTTTATAAAGAACGCGTCATCCCTTTTGTTTAAAAATAACCAA
TCAATTAAGCTTCTTGTAAAAACTCCAAGCCATCTCTTAAAAAGGTGTAC
TCTAAAAATCAAAGAAGTTTATTTCCACGTGTCTGTGAAAAGCCTTACAA
TTAAGAATACCCTTTGCTAGTTTGTAAGTAAGTTTGCGACCGCAGTCGAG
GGTGACCCAAAGGCTTTTTCTCTAGCTGTTTACCCGAAGGTAGGGGAGGG
CGCCACTCCTTTTCCTGGATTTCTATTTTTACCCTTGATCCGCCTCTTAA
GTTGCTAAGCATAGATGTGACCCGGCTGGGGATCGAACCCACAACCTTGC
GCTCCGTAGCAGGATGCTCTAGCTTCATGCTACGGCCGCTTTGCTAGCTT
GACTAATGTTCACGTTTGAATGTTTTAGCCAAGCAGCTCATGGAGAGATT
ATTACAAGGAGAATNTTAGTTTATAGTTGTATTATTTTAGGATTTAGAGG
TACAATTACCAACCCCCTCGCGAAAACCTTTGAGAATGAGATCTTTAAAG
TTAGGGGGAGTATTATCAAGGTAGGTAAGATCATTATCGGGGTCACACCC
CTTCACAAATGCAGAGGTAAATGTCACCTGTCCAATAATGTTTCGGAGTA
AGATATAGACCGACCAAGTGAAATTACTACCTATGAACTTTGTCCGGGGG
AGAGGGTGCTACTGTCTTGAATTTAACGTTGCCCATAGGACGAGTGCCTT
AATGTGTCTAGGCTGCGCGCATCACCAGAATTGATTTTGATATTGAAGAT
GCGTATCGTGTATGAAATTCCCGTCCGAGAGTTACCCCAATTTTTTAGTC
CCCTCTTTCAGTTTCCTTAAGAAGCTTCAGAGATCCAATGATTGTATTAT
TCAAAGTTTTAATTAAAATTTATGAAATCTCTCTCATATAAAACTTACTA
ATTAAGCTAATCAAGTTTCTAAAACTCAAAAACACAAAGACGGTGTAACT
CTCGGACGGAATGGGGATGATACGCATCCCTTAGATCAAAACATATCAGA
GGGGTAGGTGCAGCCTATGTAGTCGGCAGCGATTGTACCATCCATGGCTT
GTTACTAAAATGAATATTCTTGTCTTTTCAGGGATTCAAAGGAATTGCAG
TATGTAAATTTTGTTTATATAAAAAGCTTTTTAAAGTTTCAAATTTTGAA
TTTTGTAGATCAGAATCTCGAGTGTAAATGACTGATTTATATCAAAATAA
TTGTTTAAGAAAGTCTTACTGGTCATCGTAAAATAAAATTACTATTGAAA
ATTTTTTATAATTTTTTGTTGCAATGAATTTAACTTTCTTTTTCTATCAA
TTTCAGGGAATTCGAGGTGAAGAGGTAAAGGAATAATTCTATTAGTTGAA
AACTGCCGAAACTCTTAATACAAAAAATATTTAGAAATCATGTTTTAACC
ATTAATCTTGATCTCAAATTTATAATCACTTTGTTTTTTCTTTCGTCAAA
GGGGGTATGTATGGAATTTAATTGAAGATTCTACTCCTCTTTCTTTATTT
CATATTCTTTTTTAACCTCTTTAGGGCCAACCAGGCTTCCAAGGACAGAG
AGGAAACCGAGGGCAACCTGGGCCACCAGGTCCTCGAGGTGCTCCGCCAA
TTGAAAGTTTGATTGTAAGCACCGTTCTCTAACTATTTGACTGGATCGGG
CTACCCGTTCATCGAGGAAGGGTGTCTAGATTTAAGAGCTGACTAGTCCG
CCATCTTGTTTTCAATTCTGGTTGTCAACAGCACGATTCGAATGTTTTCT
AATTCGAACGTTCGAAAATCTAAAGTAAATTGGAAAAAAAACATGTTAGA
CTAGTCGACTTCAAAACTGTACACACTTCCACGGGAAATCTGTGAGCAGT
TAGCCTAGCTAGTGAAAACACCCACGATTTTTCGGGGTGGTACAGGCTAG
TTAAAATTTTAGACGAACAATAGCGAGTTTATTTATCTAACTCTTTCTAA
GAAACGAGGAGCAACTGAAACAATTGACAATAACCTGCAAGATAGGGGAA
GTCTAAAGGGCTTGCTTGCCGTTTTACTCAGTCAGGATCCAAAACATTGA
TGATAATCAAAATACATAAAATCTCCATAACGCTATTTTAGCATGCTAGA
CAACAAGCTGTAGTTTATACAAACTCATACTATCCCATTACAATGCTCGT
ATTATCGTATAACACCCGTATTACTGTATTAGACATAAAGGACTCCAGTT
TACCATAACGTTTAAAAAGGTGTACTCTAAAAATCAAAGAAGTTCATTTT
CCACGTGTCTGTGAAAAACCTTACAATTAACAATACCCTTTGCTAGTTTG
TAAGTAAGTAAGTTTGCGACCGCGGTCGAGGGTGACCCAAAGGCCTTTTC
TCTAGCTGTTTACCCGAAGGTAGGGGAGGGCGCCACTCCTTTTCCTGGGT
TTCTATATTTACCCTTGATCCGTCTCTTAAGTTGCTGAGCATAGATGTGA
CCCAGCTGGGGATCGAACCCACAACCTTGCGCTCCGTAGCAGGATGCTCT
ACCTTCATGCTACGGCCGCTTTGCTAGCTTGACTAATGTTCACGTTTGAA
TGTTTTAGCCAAGCAGCTCATGGAGAGATTATTACAAGGAGAATCCTAAC
CAGTTTTACGTAAGTTTTTTATTTACCCCATAATGATTTTATGGCTGACT
TCCACTTGGCTTGCAGATGTAGAAAACANTCCTAACCAGTTCTACGTAAG
TTTTTTATTTACCCCATAATGATTTTATGGCTGACTTCCACTTGGCTTGC
AGATGTAGAAAACATTCTATTACATCTAATCTAATACAATACAACTTGCA
TAACTGTCTTAGACAAGCCCCGGGTCCCTTCTAGGAGTGATCCCAATATG
TTCTACCACACTTGTATATAGCATTCCTGAAATATACTTTAGAATACATA
TAATAAGGTGGAAGGCTCACTCTGTGTCAATTTCTTGTCTCCCGCCCACT
AGCGTTTATCATCAGTCCTAAATCTTTTGATTTTAGCGAGCAGTTGCAGG
GGACTATTTATCTTACCTCAGAGAAGAAGTCGATGATTTGCAATATCCAC
GTGGTACACGCGATAATTCTGCATTGAATTGTCAAGAACTATTGGATAAT
CGAAATGATATTCAAAATGGTGAGAAGTTATGCCTAGTTTTATAACTACC
AAGAGAAAAAATTTGGCGGGAAGAAACTTTTGCGGATTCACTTAAAATCT
GCTAAATTTATTCCTTTTTTTTTTTTCGACTGACCACGGAACTGGACGGT
CATGCTCATGTAGCGTGTTGATTGCGAAGGGCGATTGCAATTTTTGGCTG
ATGTTTTGCTTTTTTGATTGAATTTACTGATTTATTTTGCTGTTTTAACT
GGTTTAAAGTTGTTGTTTCATTATGAGTCAAGGAAGAGTCCTCAGAAATT
CCTCTGAAGCTGCCAAACAAGAGGAGATCCTGGAACAAAAATTGCTCGAG
TTTGGAAAGAAACTGGCAACAAAAGAGGACATTAATGATATTAAAACTTT
ATTCACCAAGCTACACGAACGTCTTGACGCACAAGAAAAAAGAATCACCT
CTCTCGAAGAAGACAGTATGCATCACGAAGAANAATGGCCTCATTTTTTG
GGAATTTGGCTTTTACATTGAGTCCTGATGTCTAATCTCTCCCTTGAAAT
AAAATTAAAGCTTTTTCTAATGGCTTTTTCCAGGTTTCTCCCTATTTCCT
TCAGATATATACAGTAGACTCTCGCTTATTCGAACTACTATTATTCGAAT
CTTTCTATAATTCGAACTTATTCTCGGTCCAGGTCAAGGATAAACCGTTT
TAATATACTTTCGATCTCTCGCTAATTCGAACAAATAATATTCCCTTTTC
GAGTTCGAATTAGCAAGAGTCAACTGTGAAGGATGTCCTCGATGACAGTA
GAATAGGGATTACGTTATTGTTACTCTTCTCGTTTTAGGTCATTATTGGA
TCGATCCAAATCGAGGTTGTGCTTGGGATGCTTTTGAAACGAAATGTCTT
TTCAAAGGAGATGCTGGCTACACTTGTATAAAGCCTCAACCCAAAACGGT
ATATATATTTTTAACTATCTTTTCTATCGAATCTAATTTCTTGGTCGGTT
TTTGGTTTTTGGTATCCTCGAGGCTCGACACAGATTGTCTAAAATTCCTC
GAACTTTTATTTTGTAGACACTTCACTCTACATCCCTTCTCCTTCCATAG
TATACCGATATAACCGAAAGAATCTATTTTCATTGTTTTCTTCATTTTTT
AATTGATTTGTTTGACATTTGCAAACCAAAGAAAGAATGTCACTTGTCCG
ACTTGTCTGACTTGTCAAAGAGCGCCTAGAATCGATTATGAGACGGCGCA
TTTTAGAATAGCATTTTATTTGCTTAATTCATTACTTCAGTGGCTATCAA
AATTCTTTATTAGGAAATCTTTGACACCCATCATTCAATCATCCAATTAA
TCATCTTAAAATTATTCGGTTAATTTCAATCAAACATTTTTTTTGATTTG
TTTTTCTTGACATTGTTTTATAGGTGCATCTCCGGAAATTTGGCATAACC
AGACACCAGGAAATGGTCTTGTCCAAATTTGTGAAGGTAAAGTGATAAAC
GCCCTTTTGTCGTGAATTACATGTCTTTTTCTTGTAAGCAAGTCTTTGCT
CCTGGTTGTCCTGGGCTCGGCATATGCTTACAATTCCCTTATAGTCTGGC
AGAAATAAAAGTTGACCTGGAAAAAAATTCCGCGTAAACTTTCTTGGTAT
CGTTGGAAGCGGAATTTTACGAGGTTTAACANTTTTTCTCTATCTACTTT
TTATAATGTATACATACTGTTTTTTCGTTTATATGTGTTTTTTAATATGG
AGCTACTTTTGTAACGGGATGTTTGGTTTTGGATTTGTCGAACCGGTTGA
CTTGATATGGGAATAAGTCTACAGCAGTATAGAGCGTGCGTTGGAAATTT
TAACTCTNAAATTGGTGAAATAAAACACTTAGGACCCATTTTCGATATAA
AATGCCTTGAAAAGTGCTACCCTTGCAATGGTAGGTGTCTTTCAAAACAC
TCAAATATGTATACCCCTGTCTCAAAAATCTGGGGGGGGGGATTTCCCAA
CCACAAGCAATTAAACAGTGTTATCCATGATATGAAATGGGTCAAGTGCA
AGGCGAAAGCCCTTGGGCAAAACCAAAAGTTTTCCCCAAGGGCCTCATCA
TGAGGCTCTGAGTATGATAATCTACATAAAATTTCGCTTCCAACGGTACC
AAGAAAGTCTACGCGGAATTTTTTTCTACGTTCACCCCTATTTTGTTGTA
TTTCGGCCAGACTATTATCAGTCCTTTAATTCTTCAAACACATTTATCAG
TATCTATATATGCTTTTAAAAGAAAAGAACATTTACCTTTAAAGCCATGG
CTAGGCATAGACTTCTGGGTAATATCTAGGATATCCGGGAAAGTAATTTT
GCCTTACGTAATTGTCTGGAAGCCTTCACTCAAAAACGACTCTTGTCCAT
ATTTCTGATGAACATTATCCTTAGATTCTCGCTCTTTGTCCTGATTTCAT
AAATTAAATTGATTTTGTGTACATTTTTCTATGAAAGTGTTCTGGGGTCA
AATAAATTTCAAAATCTTCTATTGAATATCTGAGAGATATGCGNTTCTGG
GGTCAAATAAATTTCAAATTCTTCTATCTTCTATTGAGAGATATGCGTTG
ATTGGCCAAACTACTTGGTATAGATGTTTAGCTTTCAAATATACCCCTGT
GTCACACGAGAACCCCGCCAAACTGGAAAATCTGGCCAAAATTTCGTACC
CAGTAGGGAAATACCCTTCAGCTCCACTTGGAAATTAACTTTCATTCCAT
CCCCATGTAAAAAATTCAATACAAAAAATTGCAGTCCGAAACCATCCCCT
GTGGATTTTTTAGCTTGGAACGATAGAATTTCTATCCCCATTGGGATTTT
TATCCCAACTGCGGGAAAAGGTTCCACCGGAGCTGTGATACAGGGGAGTT
TGAGTGGGTTTTAGCGTTTTTTTACGATGGAGTTATTCGTAATAACCTCA
TTTTCATTGTAACTTCCCGAAGGGGCAATCAAGTTACAAACCTGTTGCTT
CAACAATGAAATTTCTTGTCGCTGATGTTCAATTCTATACTACAAATATC
ATTTAAGTTTATCTGGAAAGAGACCCGGCAATTATTATTATCGTCCTTGT
ATGATCCTTTTTAGATTCCTTGGTTTTCTATCCTCATTATTTTCTTCTCT
GCTTTGCTATAAAAGCCATTTTACAGGTAGTTTGTTGCACGAACGAACGC
TCTCGCTTAACTCGACATTTGTTTTGATGCGATTTTAATGACTATTGTGG
TTAGACCGTGGAGCCATATTAATATAATTTTTTTAATGTGATACGTTATA
AATATGTTGCGTAATTCAAATTGTCAATTTCACATGATATTTCTTCAAGT
CAAATGATTCATTACGCTAGGTTGCCAAGTTGATGATTTAAAATAGCTTC
ACATCTTTTCCGCTTACGCTTAAACCAGTTATTACCAAGGAACCTGGAGA
CTAGGTATGGAGAATATCGGCTATGTGCAGGCCGGTTTAAATTGTACCAA
AAAAGCAACTTAGAGCTTGAAGTGATTGAAGAAAGAATGTTAATATTCCA
ATAGTTTTCCACCTTAAGAGAGAGTTTTAATTGCTGTCCGTGGTTTTCAT
ACTCCTTAGAGAGCACCCTAGTGAGTGAGAATTCTGACCTTCGTAGACTA
TTTATACTTTTCTTGTTACTAAGCCCTTCGAGGGACTGGGGAAGGAATAA
ACCCAGCACCTGTTTTTGCCAGGGATTTTTCCGGACAAGGTTTCATAGAA
ATGCAATAAAATTCAGGCGTGGTTTTAAAATAGAGAATAAATTCAGCTCA
AGCCATTGTGTAATTCTAAAATATTCATATCATTATAATCAACATCTTAT
CAATATCAAATGATGCATTCTTTCGTCTGGGCCCACGAAAGTAGGTGGAG
CTTCGTGTGGGAAGGTTAAATTCTAAACTATTAACTGGAAATTATTCTAA
ATTATTTTAGAGACCACATAAGTCTCTTTTCTTACCGCTGTTAATACAGG
ATAGTACTCTTCTTATTTTGTTTTGCTAATATTATGGAAACCTTTTTTGG
ACCTACCTGGAGGTCCTATAGATTAACCATTGTCCGTTCGTTCGTTAGTT
CGTTCGTCCGTTCGTCTGTTACAAGCTTTTCTCAAGATTGGCTTAGAAAG
ATGCAAAATGGAGATACCGATGATGTGATAGCATAGGATTGAAACCAAAA
AGTGCGATTGCAGCGCGCTTATTTCTTATCGACTTAAGAGTGGCTTAAAA
TCATCATTTTCTTTACCGTTTTAGAAATCTGAGGCTTAGAGTGTTCTCAA
TTTGTTCTTAGATTATGGTCTCGTGTTTTTATAGAATTATTCTTATAAAA
ATCTATGACTTTTTTGTTTTCAGGTCAAAGCATCAGTACGCCGTCCGCAA
TTAAATTTCGTCCGATTGTTAGCATCAGACGGTTATCAAGATGTGACGTT
AAGATGTTTCAGACCACTCTACAATATCAAGAACTTCTCGTTTGTTGGTC
ACAATAAGATCGAGATAAATGGACGTGATAGAACACAAGTCAAGATTATC
GCAAATTCCTGCAGGAGGGTAAGAGTTTTCTTCTCACATATTAAATCTAG
ACTATACTCTATCTGATATAAGACAGTTAATATCCAATTAAAAACAATCA
TTTTTGTTAACTCCGACTTTTGAAAAATCGCTGTAATCATTTTTAAGGGT
AGGGTGTTTGTTTCTTCCGCTATTTTTGTTATCGTTCTAGACTACTTTCG
AACGTGTCGCATGCGGTTGCGTCCACTGACCTTATATATATCTCTGGACA
AAACTATATCCGCCATCTTTGATCGAAGTTTTTTTCAATTGGTACCCGTA
AAGAAGCCATTGCAGTGTTAAAAAATTAACGTTTAACGGCGCTACATCAG
CAAAAGTTTTCGAGGGAAAGTAGATCTAGCGCTCTCGATGCATTTACACC
GCTATTGAGAAGTGCAACCATTAGGCCACCACTTTTCAAAGAACTCCGAT
CAAAGATTTTGCTTGGCCGAGATTGAGAAGCTTGGTCCAGGGTATATAAA
GGCCAGCGGTTGCGTCCCGCGAAATATGTTACGGATCCAAAGTGTTGGCT
CCCTACTATTAGTCAACAAGAAACTAAAACTCTCAAATCTTCCTTTTTCC
CCATAGGCAAACAAGAGACGACTAGGGAGAATCACTTTCCGTATATTCAC
TGACGGTAATTTGAATTTGTTCCCTATAAAAGATGTTCGGATCCGATACG
AGGCTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044823XLOC_044823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072192-exon-scaffold_71-1575043694:789777..789868TCONS_00072192-exon-scaffold_71-1575043694:789777..789868Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1575043694:786460..786510TCONS_00072192-exon-scaffold_71-1575043694:786460..786510Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1575043694:785950..786082TCONS_00072192-exon-scaffold_71-1575043694:785950..786082Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1575043694:785021..785130TCONS_00072192-exon-scaffold_71-1575043694:785021..785130Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1575043694:784483..784545TCONS_00072192-exon-scaffold_71-1575043694:784483..784545Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1575043694:781401..781595TCONS_00072192-exon-scaffold_71-1575043694:781401..781595Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1575043694:780710..780812TCONS_00072192-exon-scaffold_71-1575043694:780710..780812Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1510915933:789777..789868TCONS_00072192-exon-scaffold_71-1510915933:789777..789868Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1510915933:786460..786510TCONS_00072192-exon-scaffold_71-1510915933:786460..786510Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1510915933:785950..786082TCONS_00072192-exon-scaffold_71-1510915933:785950..786082Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1510915933:785021..785130TCONS_00072192-exon-scaffold_71-1510915933:785021..785130Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1510915933:784483..784545TCONS_00072192-exon-scaffold_71-1510915933:784483..784545Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1510915933:781401..781595TCONS_00072192-exon-scaffold_71-1510915933:781401..781595Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1510915933:780710..780812TCONS_00072192-exon-scaffold_71-1510915933:780710..780812Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1491911889:789777..789868TCONS_00072192-exon-scaffold_71-1491911889:789777..789868Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1491911889:786460..786510TCONS_00072192-exon-scaffold_71-1491911889:786460..786510Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1491911889:785950..786082TCONS_00072192-exon-scaffold_71-1491911889:785950..786082Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1491911889:785021..785130TCONS_00072192-exon-scaffold_71-1491911889:785021..785130Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1491911889:784483..784545TCONS_00072192-exon-scaffold_71-1491911889:784483..784545Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1491911889:781401..781595TCONS_00072192-exon-scaffold_71-1491911889:781401..781595Clytia hemisphaericaexon
TCONS_00072192-exon-scaffold_71-1491911889:780710..780812TCONS_00072192-exon-scaffold_71-1491911889:780710..780812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:780710..789868 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	8.52752e-07	0.807912	0	0	0	0	0	2.20283	0	0	0	0	0	2.0998	7.06491e-09	0	0	0	2.73682	4.79178e-07	1.34823	0	0.000118936	0	0	0	7.97264e-05	0.821547	4.16453
Blast
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BLAST of TCONS_00072192 vs. Swiss-Prot (Human)
Match: COBA1 (Collagen alpha-1(XI) chain OS=Homo sapiens GN=COL11A1 PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 2.198e-18
Identity = 58/207 (28.02%), Postives = 105/207 (50.72%), Query Frame = 3 
Query:  165 LSYLREEVDDLQYPRGTRDNSALNCQELLDNRNDIQNGHYWIDPNRGCAWDAFETKCLFKGDAGYTCIKPQPKTVHLR-------KFG--ITRHQEMVLSKFVKVKA-SVRRPQLNFVRLLASDGYQDVTLRCFRPL--YNI------KNFSFVGHNKIEINGRDRTQVKIIANSCRRANKRRLGRITFRIFTDGNLNLFPIKDVRI 731
            L+ L+++++ +++P GT+ N A  C++L  +  D  +G YWIDPN+GC+ D+F+  C F    G TCI P  K+  +R       K G   +  +   L  ++ V+  S+   Q+ F++LL +   Q+ T  C +    Y++      K   F+G N  E++  +   +K + + C  A+++   +    I T   ++  PI DV I
Sbjct: 1583 LNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFT-SGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGNSINMVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPFIKTLYDGC--ASRKGYEKTVIEINTP-KIDQVPIVDVMI 1785
The following BLAST results are available for this feature:
BLAST of TCONS_00072192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COBA12.198e-1828.02Collagen alpha-1(XI) chain OS=Homo sapiens GN=COL1... [more]
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