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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072666 ID=TCONS_00072666|Name=TCONS_00072666|organism=Clytia hemisphaerica|type=transcript|length=2496bp
TGCTTCACATCTaaaacctcgaaaaattaaAGAACGTCGCGGTGCTACGG
TACGTGATGAATTCttattctattttaatcaataaaatattaaatgaaaa
aaaaatgaaattccttCATAAATTTTAGTTAGGCTAGTATatgaacctct
aattagcggacaccatttGGGGAAATGGATTAATATTCCCTAATTGGAAG
TGTCTGCATTTGAGAGTGTCTGTTAATTGAAGGTTCTACTGTATGAGATA
TTCAAAACACgtatttttgtaagaacaaactatataagagcataaggctt
cgatgacccaaattttaagaacaatttaagggtTTGCGGGCGTTacaaca
cccaatttcttaggaaaatggacgaaaatactcacaaaatggggaaatta
agaacatgttgagaacatttttaggcttaaaactcaaaaagttaagaata
tccaaaggcttccaaaattttaggtgttcttaTAACAAACCGTGTATTTC
AACATGGAAAATCTTATTTCTGAAATCAGAAATAATCATTTATTTCAATA
CTACTTGTATCAATGTTGTGTTTCTCCAACAACCGTCGAATTTCACTTTC
CACAGCATAAGAAGGTGCTTGAAACATTGATATCCTCTTCTCCACCCGTA
TAGTGATTGGTTTGTTGAATGACGTCAAATGGCGTAAAAAGTTTATTACG
TTTGTCTCTTCAACAAATTTGTTCCAAATTTCAACATGAAACGAAGTTGA
CTTTTGTAACAAATCTTCTGGTATTTCCTTCAATAAAGAAGGAAGACACT
CAAAAGTAAGTTTTCCTTGTTCGCAAATGAGATATGGTGTATATTGTTCG
ATTCTGATCTCTGTCTCGCATTCCTCACCTGATACCAAAGAAATGAGATA
CTTTTCATCCTCATTATATGATGGATAGCATACTGTAAGAAAACCAAtgt
tttttatgttcaaatCGTTTATCATATTGATGATAGTTCTGACGTACAAA
GTAATTGTCACAATATTTAAACATGCGATTGGTGTGTTGTATGATAACAA
GCGCCGAATAACTAATTTCACTCCATCACTATTATTAACATCGGTAAAAG
TCTTAATTGTAACATGGAACGAAGTTGACTTTTGTAACAAATCTTCTGGT
ATTTTGTTCAATAAAGAGGGAGGACACTTCAAAGTAAGTTTTCCTTGTTT
GCATTTGAGGTATGGTGTATAACGATCATCAACGATTCTGATCTCTGTCT
CGCATTCCTCACCCGATACCAAAGAAATGAGATACTTTTCATCCTCATCA
TATGATGGAATCCATATTTCAAGCTCAACAAtgttttttatgttcaaatC
GTTTATCAAATTGATGATGTTTCGAACATCTTTATAATTTTCTCTGATAA
TAATCTTTGCTTCCACAAATCGTTTCGAGATAAGGTTGTCACGTGATTCT
TTATATAGCGTAAGAAATTCAATGTGATCATTTCTTCCAGTGTCGATGAG
AAGTGAGTCTTCATCTTTGATCATTGATGACGGCATCTCGATGAAGCTGC
CAATAAAGTCTTCAAAGTTTGGcttactttttccaaaaatgtttggaaat
aGATTCTTGAAGGAGAGAGACTTGGATCGTGGTTTGTGGTTTGTGTTTTG
taggtttttaaaaaatgcAAGGAAGAGTTCATTCTCGTCCATTTTCAGCA
TCCGTTGAATTCCCAAAATGGTTGGTTTGCAACTTGatagttctttattt
tcaaaaaatggtgtGATATCTTTTGTGATTGAGATATACAATCCTGTCAA
ATACTCATGGAGTATTAAGTGACGGAATTGAAAAGTCACTTCCGTAGAAT
TTGATCTCTGGTGCTTTGTAATAAAGCCGGTTTCCTCGAGCGGTATCGGA
CACCTCAGCGATGCGATTTCTGCTTCATTAAAGACCACCTTGTTTTGCAT
ATACGTTGTGACAGATAGTTTCATTAAACATAACAATATTTCAGCGACGG
TTTTATCTTTGGCAATATCCATCAAGTTTGTGTAAGACTGCGATTGTCTT
TTGAGATGGTTTCTAATGAAAATGAGTGTTGTGAAGAAGTAAAGTTCAGT
TTGTGTGTTAATgggattttttatcaaatcttCCTCGAAAACTGTACAGA
TTACGGATAAAAAGACTGGAACACGCGCCATTATGCGTAAATTGTATGAT
CGTTCGATAAGTTGATGGACAGAAAATGCTTTGTCTTTACGTTCACCGAA
AAAGTTCTGAATATATTTCAAGATGTTCTCATCGTCAAACCCACAAACTT
CAATGTTCTTTCGATTGGAATTgataggaatttctttcttcaGAAATTCG
ACAGCTTTTGGTCGTCCGCATGCGATGACCTTATGGTTTGGGAGGCAATC
TGCTTTAGGATTTATCAGGTTGAAAACGGTTAGATTAAGACTGTCTCTAT
TTGAAGCTGATGAGCTTTCTGGAAGATATAAGTCTTTTAGTTCGTC Run BLAST on NCBI protein sequence of TCONS_00072666-protein >TCONS_00072666-protein ID=TCONS_00072666-protein|Name=TCONS_00072666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=656bp
DELKDLYLPESSSASNRDSLNLTVFNLINPKADCLPNHKVIACGRPKAVE
FLKKEIPINSNRKNIEVCGFDDENILKYIQNFFGERKDKAFSVHQLIERS
YNLRIMARVPVFLSVICTVFEEDLIKNPINTQTELYFFTTLIFIRNHLKR
QSQSYTNLMDIAKDKTVAEILLCLMKLSVTTYMQNKVVFNEAEIASLRCP
IPLEETGFITKHQRSNSTEVTFQFRHLILHEYLTGLYISITKDITPFFEN
KELSSCKPTILGIQRMLKMDENELFLAFFKNLQNTNHKPRSKSLSFKNLF
PNIFGKSKPNFEDFIGSFIEMPSSMIKDEDSLLIDTGRNDHIEFLTLYKE
SRDNLISKRFVEAKIIIRENYKDVRNIINLINDLNIKNIVELEIWIPSYD
EDEKYLISLVSGEECETEIRIVDDRYTPYLKCKQGKLTLKCPPSLLNKIP
EDLLQKSTSFHVTIKTFTDVNNSDGVKLVIRRLLSYNTPIACLNIVTITL
YVRTIINMINDLNIKNIGFLTVCYPSYNEDEKYLISLVSGEECETEIRIE
QYTPYLICEQGKLTFECLPSLLKEIPEDLLQKSTSFHVEIWNKFVEETNV
INFLRHLTSFNKPITIRVEKRISMFQAPSYAVESEIRRLLEKHNIDTSSI
EINDYF Run BLAST on NCBI transcript from alignment at scaffold_81:2112..4607 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072666 ID=TCONS_00072666|Name=TCONS_00072666|organism=Clytia hemisphaerica|type=transcript|length=2496bp|location=Sequence derived from alignment at scaffold_81:2112..4607 (Clytia hemisphaerica)
GACGAACTAAAAGACTTATATCTTCCAGAAAGCTCATCAGCTTCAAATAG
AGACAGTCTTAATCTAACCGTTTTCAACCTGATAAATCCTAAAGCAGATT
GCCTCCCAAACCATAAGGTCATCGCATGCGGACGACCAAAAGCTGTCGAA
TTTCtgaagaaagaaattcctatcAATTCCAATCGAAAGAACATTGAAGT
TTGTGGGTTTGACGATGAGAACATCTTGAAATATATTCAGAACTTTTTCG
GTGAACGTAAAGACAAAGCATTTTCTGTCCATCAACTTATCGAACGATCA
TACAATTTACGCATAATGGCGCGTGTTCCAGTCTTTTTATCCGTAATCTG
TACAGTTTTCGAGGaagatttgataaaaaatcccATTAACACACAAACTG
AACTTTACTTCTTCACAACACTCATTTTCATTAGAAACCATCTCAAAAGA
CAATCGCAGTCTTACACAAACTTGATGGATATTGCCAAAGATAAAACCGT
CGCTGAAATATTGTTATGTTTAATGAAACTATCTGTCACAACGTATATGC
AAAACAAGGTGGTCTTTAATGAAGCAGAAATCGCATCGCTGAGGTGTCCG
ATACCGCTCGAGGAAACCGGCTTTATTACAAAGCACCAGAGATCAAATTC
TACGGAAGTGACTTTTCAATTCCGTCACTTAATACTCCATGAGTATTTGA
CAGGATTGTATATCTCAATCACAAAAGATATCacaccattttttgaaaat
aaagaactatCAAGTTGCAAACCAACCATTTTGGGAATTCAACGGATGCT
GAAAATGGACGAGAATGAACTCTTCCTTgcattttttaaaaacctaCAAA
ACACAAACCACAAACCACGATCCAAGTCTCTCTCCTTCAAGAATCtattt
ccaaacatttttggaaaaagtaagCCAAACTTTGAAGACTTTATTGGCAG
CTTCATCGAGATGCCGTCATCAATGATCAAAGATGAAGACTCACTTCTCA
TCGACACTGGAAGAAATGATCACATTGAATTTCTTACGCTATATAAAGAA
TCACGTGACAACCTTATCTCGAAACGATTTGTGGAAGCAAAGATTATTAT
CAGAGAAAATTATAAAGATGTTCGAAACATCATCAATTTGATAAACGatt
tgaacataaaaaacaTTGTTGAGCTTGAAATATGGATTCCATCATATGAT
GAGGATGAAAAGTATCTCATTTCTTTGGTATCGGGTGAGGAATGCGAGAC
AGAGATCAGAATCGTTGATGATCGTTATACACCATACCTCAAATGCAAAC
AAGGAAAACTTACTTTGAAGTGTCCTCCCTCTTTATTGAACAAAATACCA
GAAGATTTGTTACAAAAGTCAACTTCGTTCCATGTTACAATTAAGACTTT
TACCGATGTTAATAATAGTGATGGAGTGAAATTAGTTATTCGGCGCTTGT
TATCATACAACACACCAATCGCATGTTTAAATATTGTGACAATTACTTTG
TACGTCAGAACTATCATCAATATGATAAACGatttgaacataaaaaacaT
TGGTTTTCTTACAGTATGCTATCCATCATATAATGAGGATGAAAAGTATC
TCATTTCTTTGGTATCAGGTGAGGAATGCGAGACAGAGATCAGAATCGAA
CAATATACACCATATCTCATTTGCGAACAAGGAAAACTTACTTTTGAGTG
TCTTCCTTCTTTATTGAAGGAAATACCAGAAGATTTGTTACAAAAGTCAA
CTTCGTTTCATGTTGAAATTTGGAACAAATTTGTTGAAGAGACAAACGTA
ATAAACTTTTTACGCCATTTGACGTCATTCAACAAACCAATCACTATACG
GGTGGAGAAGAGGATATCAATGTTTCAAGCACCTTCTTATGCTGTGGAAA
GTGAAATTCGACGGTTGTTGGAGAAACACAACATTGATACAAGTAGTATT
GAAATAAATGATTATTTCTGATTTCAGAAATAAGATTTTCCATGTTGAAA
TACACGGTTTGTTAtaagaacacctaaaattttggaagcctttggatatt
cttaactttttgagttttaagcctaaaaatgttctcaacatgttcttaat
ttccccattttgtgagtattttcgtccattttcctaagaaattgggtgtt
gtAACGCCCGCAAacccttaaattgttcttaaaatttgggtcatcgaagc
cttatgctcttatatagtttgttcttacaaaaatacGTGTTTTGAATATC
TCATACAGTAGAACCTTCAATTAACAGACACTCTCAAATGCAGACACTTC
CAATTAGGGAATATTAATCCATTTCCCCaaatggtgtccgctaattagag
gttcatATACTAGCCTAACTAAAATTTATGaaggaatttcattttttttt
catttaatattttattgattaaaatagaataaGAATTCATCACGTACCGT
AGCACCGCGACGTTCTttaatttttcgaggttttAGATGTGAAGCA Coding sequence (CDS) from alignment at scaffold_81:2112..4607 >TCONS_00072666 ID=TCONS_00072666|Name=TCONS_00072666|organism=Clytia hemisphaerica|type=CDS|length=1971bp|location=Sequence derived from alignment at scaffold_81:2112..4607 (Clytia hemisphaerica)
GACGAACTAAAAGACTTATATCTTCCAGAAAGCTCATCAGCTTCAAATAG
AGACAGTCTTAATCTAACCGTTTTCAACCTGATAAATCCTAAAGCAGATT
GCCTCCCAAACCATAAGGTCATCGCATGCGGACGACCAAAAGCTGTCGAA
TTTCtgaagaaagaaattcctatcAATTCCAATCGAAAGAACATTGAAGT
TTGTGGGTTTGACGATGAGAACATCTTGAAATATATTCAGAACTTTTTCG
GTGAACGTAAAGACAAAGCATTTTCTGTCCATCAACTTATCGAACGATCA
TACAATTTACGCATAATGGCGCGTGTTCCAGTCTTTTTATCCGTAATCTG
TACAGTTTTCGAGGaagatttgataaaaaatcccATTAACACACAAACTG
AACTTTACTTCTTCACAACACTCATTTTCATTAGAAACCATCTCAAAAGA
CAATCGCAGTCTTACACAAACTTGATGGATATTGCCAAAGATAAAACCGT
CGCTGAAATATTGTTATGTTTAATGAAACTATCTGTCACAACGTATATGC
AAAACAAGGTGGTCTTTAATGAAGCAGAAATCGCATCGCTGAGGTGTCCG
ATACCGCTCGAGGAAACCGGCTTTATTACAAAGCACCAGAGATCAAATTC
TACGGAAGTGACTTTTCAATTCCGTCACTTAATACTCCATGAGTATTTGA
CAGGATTGTATATCTCAATCACAAAAGATATCacaccattttttgaaaat
aaagaactatCAAGTTGCAAACCAACCATTTTGGGAATTCAACGGATGCT
GAAAATGGACGAGAATGAACTCTTCCTTgcattttttaaaaacctaCAAA
ACACAAACCACAAACCACGATCCAAGTCTCTCTCCTTCAAGAATCtattt
ccaaacatttttggaaaaagtaagCCAAACTTTGAAGACTTTATTGGCAG
CTTCATCGAGATGCCGTCATCAATGATCAAAGATGAAGACTCACTTCTCA
TCGACACTGGAAGAAATGATCACATTGAATTTCTTACGCTATATAAAGAA
TCACGTGACAACCTTATCTCGAAACGATTTGTGGAAGCAAAGATTATTAT
CAGAGAAAATTATAAAGATGTTCGAAACATCATCAATTTGATAAACGatt
tgaacataaaaaacaTTGTTGAGCTTGAAATATGGATTCCATCATATGAT
GAGGATGAAAAGTATCTCATTTCTTTGGTATCGGGTGAGGAATGCGAGAC
AGAGATCAGAATCGTTGATGATCGTTATACACCATACCTCAAATGCAAAC
AAGGAAAACTTACTTTGAAGTGTCCTCCCTCTTTATTGAACAAAATACCA
GAAGATTTGTTACAAAAGTCAACTTCGTTCCATGTTACAATTAAGACTTT
TACCGATGTTAATAATAGTGATGGAGTGAAATTAGTTATTCGGCGCTTGT
TATCATACAACACACCAATCGCATGTTTAAATATTGTGACAATTACTTTG
TACGTCAGAACTATCATCAATATGATAAACGatttgaacataaaaaacaT
TGGTTTTCTTACAGTATGCTATCCATCATATAATGAGGATGAAAAGTATC
TCATTTCTTTGGTATCAGGTGAGGAATGCGAGACAGAGATCAGAATCGAA
CAATATACACCATATCTCATTTGCGAACAAGGAAAACTTACTTTTGAGTG
TCTTCCTTCTTTATTGAAGGAAATACCAGAAGATTTGTTACAAAAGTCAA
CTTCGTTTCATGTTGAAATTTGGAACAAATTTGTTGAAGAGACAAACGTA
ATAAACTTTTTACGCCATTTGACGTCATTCAACAAACCAATCACTATACG
GGTGGAGAAGAGGATATCAATGTTTCAAGCACCTTCTTATGCTGTGGAAA
GTGAAATTCGACGGTTGTTGGAGAAACACAACATTGATACAAGTAGTATT
GAAATAAATGATTATTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072666-exon-scaffold_81-1491911889:2112..4607 | TCONS_00072666-exon-scaffold_81-1491911889:2112..4607 | Clytia hemisphaerica | exon |
| TCONS_00072666-exon-scaffold_81-1510915933:2112..4607 | TCONS_00072666-exon-scaffold_81-1510915933:2112..4607 | Clytia hemisphaerica | exon |
| TCONS_00072666-exon-scaffold_81-1575043694:2112..4607 | TCONS_00072666-exon-scaffold_81-1575043694:2112..4607 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_81 | supercontig | scaffold_81:2112..4607 . |
Blast
The following BLAST results are available for this feature:
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