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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073117 ID=TCONS_00073117|Name=TCONS_00073117|organism=Clytia hemisphaerica|type=transcript|length=1122bp
NNACATGAAGATTTCGCCTCCAGGAGATATTTTGAGCCAGTTAAAAGCCA
AATTTAGGCAATATAACTTGGCAGCCTTCTACCAGTAGGACTGACATTCC
ATCAGATCTGTACCAAAAGAGTGTTAATTTCCTTCAATATGATATCTAAG
CCCATTCGCTTTAAGTGAGCACTCTTTTTTAACACCATATGAAAAGTATT
CTTAAACCAGTTAGTCTaatcagtagcgtggtgggttgAATAAAATTCGG
GCAAATCGGGGAGGCAATTTTAGaaggttttgattttggcgttccctatg
aaaagtaaatatctttttaaaaataatgcgagcgaagcaagcactatatt
ttggggtattttctctttttttagccAAAAATTGGCGTAAGGTGTAAAGG
AGCAAAGGGGTCCCGAAAGTAGTAATCAGAGGCGTCTTTTTGCACCCTTT
GtattttggcgcccctttgAAAAACCCCCACATAGTTTCCACTTGGTAAC
AAAAGCGAGTTCATACTTAAaaagcgaatggactttaaAGTAAATCTTGA
ACCTTCTATTATATCAATCACTGCAATGAAAAACAAATTAGTCAATTTTA
GGCCTCCATCCATCCTTAAATCGATTCAATttcttgatttcaaatttggt
caaatttaagtctctcatttcttcttcatcaaggTGAAGAAATAGTTCAC
CATCAATTTGATTCTCAACAAAAACATCCATATGTTTCTCCATGTTtaag
tttttcaatttctcgGCAAGTTGTTGGACACTCAATTCCCTAATCTCTTT
ATACTTATCAATAGCAGGTCCACCGTTAAGGTGATTCTCTGAATGACCAT
TAATGCTGGTCATAGAGCCATTATGACTCCTGTTAAAGCCGTTGATGCCA
TTCATAGGGTACTGGACCGACGAGCTTCGACGTTGTTGAGCCAACGGGTC
CATAGCTGGGTTCATCGGTGTCGCGAAATTAGAATGGCCATTCATGGAGC
CACGTTTTTCCATTGATGAATAATCTATAGGCTGGTTCATTGGAGTCGCG
AAATTTGTTGGGCCACCATTCATCGAGTTTCGTTTCTCCATATGTCGTGT
TGAGTTCCCTTGTGGATTATAA Run BLAST on NCBI protein sequence of TCONS_00073117-protein >TCONS_00073117-protein ID=TCONS_00073117-protein|Name=TCONS_00073117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
YNPQGNSTRHMEKRNSMNGGPTNFATPMNQPIDYSSMEKRGSMNGHSNFA
TPMNPAMDPLAQQRRSSSVQYPMNGINGFNRSHNGSMTSINGHSENHLNG
GPAIDKYKEIRELSVQQLAEKLKNLNMEKHMDVFVENQIDGELFLHLDEE
EMRDLNLTKFEIKKLNRFKDGWRPKID Run BLAST on NCBI transcript from alignment at scaffold_86:259812..260933 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073117 ID=TCONS_00073117|Name=TCONS_00073117|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at scaffold_86:259812..260933 (Clytia hemisphaerica)
TTATAATCCACAAGGGAACTCAACACGACATATGGAGAAACGAAACTCGA
TGAATGGTGGCCCAACAAATTTCGCGACTCCAATGAACCAGCCTATAGAT
TATTCATCAATGGAAAAACGTGGCTCCATGAATGGCCATTCTAATTTCGC
GACACCGATGAACCCAGCTATGGACCCGTTGGCTCAACAACGTCGAAGCT
CGTCGGTCCAGTACCCTATGAATGGCATCAACGGCTTTAACAGGAGTCAT
AATGGCTCTATGACCAGCATTAATGGTCATTCAGAGAATCACCTTAACGG
TGGACCTGCTATTGATAAGTATAAAGAGATTAGGGAATTGAGTGTCCAAC
AACTTGCcgagaaattgaaaaacttaAACATGGAGAAACATATGGATGTT
TTTGTTGAGAATCAAATTGATGGTGAACTATTTCTTCAccttgatgaaga
agaaatgagagacttaaatttgaccaaatttgaaatcaagaaATTGAATC
GATTTAAGGATGGATGGAGGCCTAAAATTGACTAATTTGTTTTTCATTGC
AGTGATTGATATAATAGAAGGTTCAAGATTTACTttaaagtccattcgct
ttTTAAGTATGAACTCGCTTTTGTTACCAAGTGGAAACTATGTGGGGGTT
TTTcaaaggggcgccaaaataCAAAGGGTGCAAAAAGACGCCTCTGATTA
CTACTTTCGGGACCCCTTTGCTCCTTTACACCTTACGCCAATTTTTggct
aaaaaaagagaaaataccccaaaatatagtgcttgcttcgctcgcattat
ttttaaaaagatatttacttttcatagggaacgccaaaatcaaaaccttC
TAAAATTGCCTCCCCGATTTGCCCGAATTTTATTcaacccaccacgctac
tgattAGACTAACTGGTTTAAGAATACTTTTCATATGGTGTTAAAAAAGA
GTGCTCACTTAAAGCGAATGGGCTTAGATATCATATTGAAGGAAATTAAC
ACTCTTTTGGTACAGATCTGATGGAATGTCAGTCCTACTGGTAGAAGGCT
GCCAAGTTATATTGCCTAAATTTGGCTTTTAACTGGCTCAAAATATCTCC
TGGAGGCGAAATCTTCATGTNN Coding sequence (CDS) from alignment at scaffold_86:259812..260933 >TCONS_00073117 ID=TCONS_00073117|Name=TCONS_00073117|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_86:259812..260933 (Clytia hemisphaerica)
TATAATCCACAAGGGAACTCAACACGACATATGGAGAAACGAAACTCGAT
GAATGGTGGCCCAACAAATTTCGCGACTCCAATGAACCAGCCTATAGATT
ATTCATCAATGGAAAAACGTGGCTCCATGAATGGCCATTCTAATTTCGCG
ACACCGATGAACCCAGCTATGGACCCGTTGGCTCAACAACGTCGAAGCTC
GTCGGTCCAGTACCCTATGAATGGCATCAACGGCTTTAACAGGAGTCATA
ATGGCTCTATGACCAGCATTAATGGTCATTCAGAGAATCACCTTAACGGT
GGACCTGCTATTGATAAGTATAAAGAGATTAGGGAATTGAGTGTCCAACA
ACTTGCcgagaaattgaaaaacttaAACATGGAGAAACATATGGATGTTT
TTGTTGAGAATCAAATTGATGGTGAACTATTTCTTCAccttgatgaagaa
gaaatgagagacttaaatttgaccaaatttgaaatcaagaaATTGAATCG
ATTTAAGGATGGATGGAGGCCTAAAATTGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073117-exon-scaffold_86-1491911889:259812..260933 | TCONS_00073117-exon-scaffold_86-1491911889:259812..260933 | Clytia hemisphaerica | exon |
| TCONS_00073117-exon-scaffold_86-1510915933:259812..260933 | TCONS_00073117-exon-scaffold_86-1510915933:259812..260933 | Clytia hemisphaerica | exon |
| TCONS_00073117-exon-scaffold_86-1575043694:259812..260933 | TCONS_00073117-exon-scaffold_86-1575043694:259812..260933 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:259812..260933 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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