TCONS_00073169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073169
Unique NameTCONS_00073169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073169 ID=TCONS_00073169|Name=TCONS_00073169|organism=Clytia hemisphaerica|type=transcript|length=457bp
GCATCGGTGACAACttatttcaattcttcaaaGTACTACACCACAAGAAG
AAATGATaactttctttcaaaagttgCAATAATTGGACGTAAAAAAAACG
aaGCTTAGAAATCGGAAGAAGGTGCTAAAAGCGAAGACGACTATCTCTGA
CGTCGATAAAATGGTGATCGATAAGGTTTTAACGATGGACTTCATGTCGT
CCGAAGATGAAAAGGAGGACTCAAGGTTCAACCACTGAGATGGCGTTCGC
AAAAATGTGATAAGTACTTTGAAGCGTTGGATAAAAAGACAATGATAAAG
CTATCGAAAAAAGTGCGAAGACAAACTGTTATATGCAAGATGGGGCCTTT
CAATTGAAGGGCAGCACCTGAGGTCGACGAATCAAATGCATGGACAATAA
TAACTAAATAAACCTTTAACCTATTCattttgttatattatgttaCTATT
TTGCTTN
Run BLAST on NCBI

transcript from alignment at scaffold_87:175150..175985-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073169 ID=TCONS_00073169|Name=TCONS_00073169|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at scaffold_87:175150..175985- (Clytia hemisphaerica)
GCATCGGTGACAACTTATTTCAATTCTTCAAAGTACTACACCACAAGAAG
AAATGATAACTTTCTTTCAAAAGTTGCAATAATTGGACGTAAAAAAAACG
GTAAGAGGCCTTATGCATAAAATCTATGAACTATACTGTGTTCTTTCATT
TTCATAAAAACAATAGATTGATGTAATGAAGTGGCCACCCATCTTTGTGG
GCATACTATCACAATAGCTGAAGCTTTCTGTATTGAAACCGTTAACACGT
ATTTGAAAAACATATATGTTAGGCTTTTTTATAGATTTACCGGGGGCTTA
CTTGAAAGATGTTGTGCGCAAAAATTTTGCCGGCATTGATAGTAGCTGAA
CACTTTGAAGAAGTTCGGAAAACATTAAATCACAGATTTCATTCAATAGT
GCTTTATCTTTTCAACCTGCATTACTTTTCAGCTTTTACAGTATTACTTC
AATCATTTTTGTCTTTTTCCTTTTTTCAGAAGCTTAGAAATCGGAAGAAG
GTGCTAAAAGCGAAGACGACTATCTCTGACGTCGATAAAATGGTGATCGA
TAAGGTTTTAACGATGGACTTCATGTCGTCCGAAGATGAAAAGGAGGACT
CAAGGTTCAACCACTGAGATGGCGTTCGCAAAAATGTGATAAGTACTTTG
AAGCGTTGGATAAAAAGACAATGATAAAGCTATCGAAAAAAGTGCGAAGA
CAAACTGTTATATGCAAGATGGGGCCTTTCAATTGAAGGGCAGCACCTGA
GGTCGACGAATCAAATGCATGGACAATAATAACTAAATAAACCTTTAACC
TATTCATTTTGTTATATTATGTTACTATTTTGCTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045381XLOC_045381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073169-exon-scaffold_87-1575043694:175886..175985TCONS_00073169-exon-scaffold_87-1575043694:175886..175985Clytia hemisphaericaexon
TCONS_00073169-exon-scaffold_87-1575043694:175150..175506TCONS_00073169-exon-scaffold_87-1575043694:175150..175506Clytia hemisphaericaexon
TCONS_00073169-exon-scaffold_87-1510915933:175886..175985TCONS_00073169-exon-scaffold_87-1510915933:175886..175985Clytia hemisphaericaexon
TCONS_00073169-exon-scaffold_87-1510915933:175150..175506TCONS_00073169-exon-scaffold_87-1510915933:175150..175506Clytia hemisphaericaexon
TCONS_00073169-exon-scaffold_87-1491911889:175886..175985TCONS_00073169-exon-scaffold_87-1491911889:175886..175985Clytia hemisphaericaexon
TCONS_00073169-exon-scaffold_87-1491911889:175150..175506TCONS_00073169-exon-scaffold_87-1491911889:175150..175506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:175150..175985 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.658354	0.461549	0	3.49323	2.61189	3.49856	2.24736	1.15693	1.31679	2.99855	1.10375	1.93606	0.701766	0.976956	1.01009	0.987801	1.17286	1.01427	2.12198	1.14898	1.80255	1.50448	0.983085	0.602991	0.807566	4.21427	4.91029	0.550794	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top