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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073669 ID=TCONS_00073669|Name=TCONS_00073669|organism=Clytia hemisphaerica|type=transcript|length=2287bpRun BLAST on NCBI protein sequence of TCONS_00073669-protein >TCONS_00073669-protein ID=TCONS_00073669-protein|Name=TCONS_00073669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=761bp NCTFPYNGTGCQYHVCDIAFPCHNGTCMKTHGGFQCQCNPGFTSQDCSTDRun BLAST on NCBI transcript from alignment at scaffold_97:622749..633203+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073669 ID=TCONS_00073669|Name=TCONS_00073669|organism=Clytia hemisphaerica|type=transcript|length=10455bp|location=Sequence derived from alignment at scaffold_97:622749..633203+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:622749..633203+ >TCONS_00073669 ID=TCONS_00073669|Name=TCONS_00073669|organism=Clytia hemisphaerica|type=CDS|length=13698bp|location=Sequence derived from alignment at scaffold_97:622749..633203+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073669 vs. Swiss-Prot (Human)
Match: NOTC3 (Neurogenic locus notch homolog protein 3 OS=Homo sapiens GN=NOTCH3 PE=1 SV=2) HSP 1 Score: 180.259 bits (456), Expect = 1.465e-46 Identity = 126/378 (33.33%), Postives = 170/378 (44.97%), Query Frame = 3
Query: 18 YNGTGCQYHVCDI-AFPCHNG-TCMKTHGGFQCQCNPGFTSQDCSTDINECLVDDVCQNNGACVNMVGNFSCVCGEEYTGRLCEKKIEYCNSTTCLNGGVCINDYVNHKFKCICNGDYTGSQCDAKVSICINQTCNHGDCFDHNNGSFSCHCNFGFFGANCQQF-----ECPCFEDGGRCVRENASEPYQCLCKAGFTGKLCDTFTTDCRNTSKS--------CVLDSYCQQADYGYVCVCPPHLQGERCNKP-GLCSYEPCKNNGTCLSLETGGYQCLCNEEYTGNQCQYDLNECLSSPCQHNGRCAEDGIGSFKCYCLEGYNGTQCE---------------------------XGSFKCYCLEGYNGTQCEKRLN 1022
Y G C + D PC NG +C G F C C PGF C+ D++ECL + G C + V +F+C C Y G CE+ + C+ ++C NGG C+ D VN F C+C YTG+ C + C+++ C HG + F C C F G CQ PC ++GGRCV+ A CLC G++G+LCD + CR + C C D + CVCP G C + C +PC++ GTC GGY C C Y G+ C+ D++EC S PCQH G C D + + C C G G CE G F+C C GY G +CE +N
Sbjct: 841 YTGPSCDQDINDCDPNPCLNGGSCQDGVGSFSCSCLPGFAGPRCARDVDECLSNPC--GPGTCTDHVASFTCTCPPGYGGFHCEQDLPDCSPSSCFNGGTCV-DGVN-SFSCLCRPGYTGAHCQHEADPCLSRPCLHGGVCSAAHPGFRCTCLESFTGPQCQTLVDWCSRQPC-QNGGRCVQTGA----YCLCPPGWSGRLCDIRSLPCREAAAQIGVRLEQLCQAGGQCVDEDSSHYCVCPEGRTGSHCEQEVDPCLAQPCQHGGTCRGY-MGGYMCECLPGYNGDNCEDDVDECASQPCQHGGSCI-DLVARYLCSCPPGTLGVLCEINEDDCGPGPPLDSGPRCLHNGTCVDLVGGFRCTCPPGYTGLRCEADIN 1207 HSP 2 Score: 166.392 bits (420), Expect = 3.452e-42 Identity = 131/368 (35.60%), Postives = 170/368 (46.20%), Query Frame = 3
Query: 6 CTFP--YNGTGCQYHV--CDI-AFPC-HNGTCMKTHGGFQCQCNPGFTSQDCSTDINECLVDDVCQNNGACVNMVGNFSCVCGEEYTGRLCEKKIEYCNSTTCLNGGVCINDYVNHKFKCICNGDYTGSQCDAKVSICINQTCNHG-DCFDHNNGSFSCHCNFGFFGANCQQFECPCFEDG---GRCVRENASEPYQCLCKAGFTGKLCDTFTTDCRNTSKSCVLDSYCQQADYGYVCVCPPHLQGERCN-KPGLCSYEPCKNNGTCLSLETGGYQCLCNEEYTGNQCQYDLNECLSSPCQHNGRCAEDGIGSFKCYCLEGYNGTQC-------------------EXGSFKCYCLEGYNGTQCEKRL 1019
CT P + G C V C I A PC H G C+ T G F CQC G+T C TD+NECL C+N C++ +G F+C+C +TG CE I+ C S+ C+NGGVC D VN F C C ++GS C V C + C +G C D +G + C C GF G C + C D GRCV AS + C C G+TG C++ +CR S+ C C Y+C CP G C C+ PC G C Y C+C +TG C ++NEC SSPC G C DG F+C C G C G F+C C G++G +C + L
Sbjct: 377 CTCPPGFTGGACDQDVDECSIGANPCEHLGRCVNTQGSFLCQCGRGYTGPRCETDVNECL-SGPCRNQATCLDRIGQFTCICMAGFTGTYCEVDIDECQSSPCVNGGVC-KDRVN-GFSCTCPSGFSGSTCQLDVDECASTPCRNGAKCVDQPDG-YECRCAEGFEGTLCDRNVDDCSPDPCHHGRCVDGIAS--FSCACAPGYTGTRCESQVDECR--SQPCRHGGKCLDLVDKYLCRCPSGTTGVNCEVNIDDCASNPC-TFGVCRD-GINRYDCVCQPGFTGPLCNVEINECASSPCGEGGSCV-DGENGFRCLCPPGSLPPLCLPPSHPCAHEPCSHGICYDAPGGFRCVCEPGWSGPRCSQSL 733 HSP 3 Score: 153.68 bits (387), Expect = 3.929e-38 Identity = 118/402 (29.35%), Postives = 170/402 (42.29%), Query Frame = 3
Query: 3 NCTFPYNGTGCQYHVCDIAF-PCHNGTCMKTHGGFQCQCNPGFTSQDCSTDINECLVDDVCQNNGACVNMVGNFSCVCGEEYTGRLCEKKIEYCNSTTCLNGGVCINDYVNHKFKCICNGDYTGSQCDAKVSICINQTCNHG-DCFDHNNGSFSCHCNFGFFGANCQQFECPCFEDG---GRCVRENASEPYQCLCKAGFTGKLCDTFTTDCRNTSKSCVLDSYCQQADYGYVCVCPPHLQGERCNKPGLCSYEPCKNNGTCLSLE---------------------------------------TGGYQCLCNEEYTGNQCQYDLNECLSSPCQHNGRCAEDGIGSFKCYCLEGYNGTQC-------------------EXGSFKCYCLEGYNGTQCEKRL 1019
C + GT C +V D + PCH+G C+ F C C PG+T C + ++EC C++ G C+++V + C C TG CE I+ C S C G VC D +N ++ C+C +TG C+ +++ C + C G C D NG F C C G C PC + G C +A ++C+C+ G++G C S+ C C G+ C CPP +QG +C C+ PC++ G C S G + C C+ YTG C D+N+C +PC + G C +DG+GSF C CL G+ G +C SF C C GY G CE+ L
Sbjct: 532 RCAEGFEGTLCDRNVDDCSPDPCHHGRCVDGIASFSCACAPGYTGTRCESQVDECR-SQPCRHGGKCLDLVDKYLCRCPSGTTGVNCEVNIDDCASNPCTFG-VC-RDGIN-RYDCVCQPGFTGPLCNVEINECASSPCGEGGSCVDGENG-FRCLCPPGSLPPLCLPPSHPCAHEPCSHGICY--DAPGGFRCVCEPGWSGPRCSQSLARDACESQPCRAGGTCSSDGMGFHCTCPPGVQGRQCELLSPCTPNPCEHGGRCESAPGQLPVCSCPQGWQGPRCQQDVDECAGPAPCGPHGICTNLAGSFSCTCHGGYTGPSCDQDINDCDPNPCLNGGSC-QDGVGSFSCSCLPGFAGPRCARDVDECLSNPCGPGTCTDHVASFTCTCPPGYGGFHCEQDL 925 HSP 4 Score: 151.369 bits (381), Expect = 2.196e-37 Identity = 125/384 (32.55%), Postives = 168/384 (43.75%), Query Frame = 3
Query: 3 NCTFPYNGTGCQYHVCDIAFPC------HNGTCMKTHGGFQ-CQCNPGFTSQDCSTDINECLVDDVCQNNGACVNMVGNFSCVCGEEYTGRLCEKKIEYCNSTTCLNGGVCINDYVNHKFKCICNGDYTGSQCDAKVSICINQTCNHGDCFDHNNGSFSCHCNFGFFGANCQQFECP------CFEDGGRCVRENASEPYQCLCKAGFTGKLCDTFTTDCRNTSKSCVLDSYCQQADYGYVCVCPPHLQGERCNK-PGLCSYEPCKNNGTCLSLETGGYQCLCNEEYTGNQCQYDLNEC----------LSSPCQHNGRCAEDGIGSFKCYCLEGYNGTQCE--------------------XGSFKCYCLEGYNGTQCEKRLN 1022
+CT P G Q C++ PC H G C G C C G+ C D++EC C +G C N+ G+FSC C YTG C++ I C+ CLNGG C D V F C C + G +C V C++ C G C DH SF+C C G+ G +C+Q + P CF +GG CV + + CLC+ G+TG C C S+ C+ C A G+ C C G +C CS +PC+N G C ++TG Y CLC ++G C C L CQ G+C ++ S C C EG G+ CE G + C CL GYNG CE ++
Sbjct: 757 HCTCP---PGVQGRQCELLSPCTPNPCEHGGRCESAPGQLPVCSCPQGWQGPRCQQDVDECAGPAPCGPHGICTNLAGSFSCTCHGGYTGPSCDQDINDCDPNPCLNGGSC-QDGVG-SFSCSCLPGFAGPRCARDVDECLSNPCGPGTCTDH-VASFTCTCPPGYGGFHCEQ-DLPDCSPSSCF-NGGTCV--DGVNSFSCLCRPGYTGAHCQHEADPC--LSRPCLHGGVCSAAHPGFRCTCLESFTGPQCQTLVDWCSRQPCQNGGRC--VQTGAY-CLCPPGWSGRLCDIRSLPCREAAAQIGVRLEQLCQAGGQCVDED-SSHYCVCPEGRTGSHCEQEVDPCLAQPCQHGGTCRGYMGGYMCECLPGYNGDNCEDDVD 1124 HSP 5 Score: 149.443 bits (376), Expect = 1.042e-36 Identity = 119/369 (32.25%), Postives = 166/369 (44.99%), Query Frame = 3
Query: 18 YNGTGCQYHVCDIAFPCHN----GTCMKTHGGFQCQCNPGFTSQDCSTDINEC-LVDDVCQNNGACVNMVGNFSCVCGEEYTGRLCEKKIEYCNSTTCLNGGVCINDYVNHKFKCICNGDYTGSQCDAKVSICINQTCNHGDCFDHN--NGSFSCHCNFGFFGANCQQF--EC-----PCFEDGGRCVRENASEPYQCLCKAGFTGKLCDTFTTDCRNTSKSCVLDSYCQQADYGYVCVCPPHLQGERCN-KPGLCSYEPCKNNGTCLSLETGGYQCLCNEEYTGNQCQYDLNECLSSPCQHNGRCAEDGIGSFKCYCLEGYNGTQCEX-------------------GSFKCYCLEGYNGTQCEKRLN 1022
+ G C+ +V D P H GTC+ + CQC P +T Q C+ D++EC L + C N G C N +G SCVC +TG C + I+ C + C +G C + + F C C TG C C++ C+ D N NG C C GF G C Q EC PC E GRCV S + C C G+TG C+T +C S C + C + C+C G C C PC N G C G+ C C ++G+ CQ D++EC S+PC++ +C + G ++C C EG+ GT C+ SF C C GY GT+CE +++
Sbjct: 228 FEGQNCEVNVDDC--PGHRCLNGGTCVDGVNTYNCQCPPEWTGQFCTEDVDECQLQPNACHNGGTCFNTLGGHSCVCVNGWTGESCSQNIDDCATAVCFHGATCHDRVAS--FYCACPMGKTGLLCHLD-DACVSNPCHEDAICDTNPVNGRAICTCPPGFTGGACDQDVDECSIGANPC-EHLGRCVNTQGS--FLCQCGRGYTGPRCETDVNEC--LSGPCRNQATCLDRIGQFTCICMAGFTGTYCEVDIDECQSSPCVNGGVCKD-RVNGFSCTCPSGFSGSTCQLDVDECASTPCRNGAKCVDQPDG-YECRCAEGFEGTLCDRNVDDCSPDPCHHGRCVDGIASFSCACAPGYTGTRCESQVD 584 HSP 6 Score: 144.821 bits (364), Expect = 3.150e-35 Identity = 111/372 (29.84%), Postives = 159/372 (42.74%), Query Frame = 3
Query: 3 NCTFPYNGTGCQYHVCDIAFPCHNGT--CMKTHGGFQCQCNPGFTSQDCSTDINECLVDDVCQNNGACVNMVGNFSCVCGEEYTGRLCEKKIEYCNSTTCLNGGVCINDYVNHKFKCICNGDYTGSQCDAKVSICINQTC-NHGDCFDHNNGSFSCHCNFGFFGANCQ------QFECPCFEDGGRCVRENASEPYQCLCKAGFTGKLCDTFTTDCRNTSKSCVLDSYCQQADYGYVCVCPPHLQGERCNKPGLCSYEPCKNNGTCLSLETGGYQ-CLCNEEYTGNQCQYDLNECL--SSPCQHNGRCAEDGIGSFKCYCLEGYNGTQCEX--------------------GSFKCYCLEGYNGTQCEKRLN 1022
C + G C ++ PC +G + G F C C PG+ + C +D++EC V + C++ G C+N G+F C C YTG LCE C + C NGG C + + C C + G C+ V C C N G C D N +++C C + G C Q + +GG C N + C+C G+TG+ C DC + C + C + C CP G C+ C PC + C + G C C +TG C D++EC ++PC+H GRC + GSF C C GY G +CE G F C C+ G+ GT CE ++
Sbjct: 107 RCPRGFRGPDCSLPDPCLSSPCAHGARCSVGPDGRFLCSCPPGYQGRSCRSDVDECRVGEPCRHGGTCLNTPGSFRCQCPAGYTGPLCENPAVPCAPSPCRNGGTC-RQSGDLTYDCACLPGFEGQNCEVNVDDCPGHRCLNGGTCVDGVN-TYNCQCPPEWTGQFCTEDVDECQLQPNACHNGGTCF--NTLGGHSCVCVNGWTGESCSQNIDDC--ATAVCFHGATCHDRVASFYCACPMGKTGLLCHLDDACVSNPCHEDAICDTNPVNGRAICTCPPGFTGGACDQDVDECSIGANPCEHLGRCV-NTQGSFLCQCGRGYTGPRCETDVNECLSGPCRNQATCLDRIGQFTCICMAGFTGTYCEVDID 471 HSP 7 Score: 102.064 bits (253), Expect = 6.238e-22 Identity = 91/299 (30.43%), Postives = 128/299 (42.81%), Query Frame = 3
Query: 162 CLVDDVCQNNGACVNMVGN-FSCVCGEEYTGRLCEKKIEYCNSTTCLNGGVCINDYV--NHKFKCICNGDYTGSQCDAKVSICINQTCNHG-DCFDHNNGSFSCHCNFGFFGANCQQ--FEC----PCFEDGGRCVRENASEPYQCLCKAGFTGKLCDTFTTDCRNTSKSCVLDSYCQQA-DYGYVCVCPPHLQGERCN-KPGLCSYEPCKNNGTCLSLETGGYQCLCNEEYTGNQCQYDLNECLSSPCQ-HNGRCAEDGIGSFKCYCLEGYNGTQCEXGSFKCYCLEGYNGTQCEKRL 1019
CL C N G C + +C+C + G C+ + + C+S C GVC + V +F C C + G C C++ C HG C +G F C C G+ G +C+ EC PC GG C+ S ++C C AG+TG LC+ C C C+Q+ D Y C C P +G+ C C C N GTC+ Y C C E+TG C D++EC P HNG + +G C C+ G+ G C C ++G C R+
Sbjct: 43 CLDGSPCANGGRCTQLPSREAACLCPPGWVGERCQLE-DPCHSGPCAGRGVCQSSVVAGTARFSCRCPRGFRGPDCSLP-DPCLSSPCAHGARCSVGPDGRFLCSCPPGYQGRSCRSDVDECRVGEPC-RHGGTCLNTPGS--FRCQCPAGYTGPLCENPAVPC--APSPCRNGGTCRQSGDLTYDCACLPGFEGQNCEVNVDDCPGHRCLNGGTCVD-GVNTYNCQCPPEWTGQFCTEDVDECQLQPNACHNGGTCFNTLGGHSCVCVNGWTGESCSQNIDDCATAVCFHGATCHDRV 333 HSP 8 Score: 100.523 bits (249), Expect = 1.698e-21 Identity = 85/324 (26.23%), Postives = 122/324 (37.65%), Query Frame = 3
Query: 54 IAFPC-HNGTCMKTHGGFQCQCNPGFTSQDCSTDINECL----------VDDV----------------------------------CQNNGACVNMVGNFSCVCGEEYTGRLCEKKIEYCNSTTCLNGGV--CINDYVNHKFKCICNGDYTGSQCDAKVSICINQTCNHGDCFDHNNG-----SFSCHCNFGFFGANCQQFECPCFEDGGRCVRENASEPYQCLCKAGFTGKLCDTFTTDCRNTSKSCVLDSYCQQADYGYVCVCPPHLQGERC-----NKPGL----CSYEPCKNNGTCLSLETGG-YQCLCNEEYTGNQCQ 839
+A PC H GTC GG+ C+C PG+ +C D++EC +D V C +NG CV++VG F C C YTG CE I C S C C+ D F+C+C+ ++G +C +S C +Q C HG + G +F+CHC F+G C++ C E C + CQQ G C CPP L G C + PG C+ PC + G+C ++C C + +TG +C+
Sbjct: 1089 LAQPCQHGGTCRGYMGGYMCECLPGYNGDNCEDDVDECASQPCQHGGSCIDLVARYLCSCPPGTLGVLCEINEDDCGPGPPLDSGPRCLHNGTCVDLVGGFRCTCPPGYTGLRCEADINECRSGACHAAHTRDCLQD-PGGGFRCLCHAGFSGPRCQTVLSPCESQPCQHGGQCRPSPGPGGGLTFTCHCAQPFWGPRCERVARSCRE--------------------------------------LQCPVGVPCQQTPRGPRCACPPGLSGPSCRSFPGSPPGASNASCAAAPCLHGGSCRPAPLAPFFRCACAQGWTGPRCE 1373 HSP 9 Score: 82.4185 bits (202), Expect = 7.385e-16 Identity = 96/398 (24.12%), Postives = 142/398 (35.68%), Query Frame = 3
Query: 69 HNGTCMKTHGGFQCQCNPGFTSQDCSTDINECL--------VDDVCQNNGACVNMVGNFSCVCGEEYTGRLCEKKIEYCNSTTCLNGGVC---INDYVNHKFKCICNGDYTGSQCDAKVSICINQTCNHGDCFDHNNGSFSCHCNFGFFGANCQQF-------------ECPCFEDGGRCVRENASEPYQCLCKAGFTGKLCDTFTTDCRNTSKSCVLDSYCQQADYGYVCVCPPHLQGERCNKPGLCSYEPCKNNGTCLSLETG-------GYQCL-------CNEEYTGNQCQYDLNECLSSPCQHNGRCAEDGIGSFKCYCLEGYNGTQCEXGSFKCYCLEGYNGTQCEKRLNPNNSATSLLVIGSSSNELIMTPTIETTKHMQTSVPILQTYTS 1148
HNGTC+ GGF+C C PG+T C DINEC D Q+ G G F C+C ++G C+ + C S C +GG C F C C + G +C+ C C G C C G G +C+ F PC GG C + ++C C G+TG C+ + + + CQ C CN PG C +G SL G QC C+ + C YD +C H G ++ YC + + +C+ G C G++G C + +LL G L++T + + +++S LQ ++
Sbjct: 1178 HNGTCVDLVGGFRCTCPPGYTGLRCEADINECRSGACHAAHTRDCLQDPG------GGFRCLCHAGFSGPRCQTVLSPCESQPCQHGGQCRPSPGPGGGLTFTCHCAQPFWGPRCERVARSCRELQCPVGVPCQQTPRGPRCACPPGLSGPSCRSFPGSPPGASNASCAAAPCLH-GGSCRPAPLAPFFRCACAQGWTGPRCEAPAAAPEVSEEPRCPRAACQAKRGDQRC-------DRECNSPG------CGWDGGDCSLSVGDPWRQCEALQCWRLFNNSRCDPACSSPACLYDNFDC------HAGGRERTCNPVYEKYCADHFADGRCDQGCNTEEC--GWDGLDCASEV------PALLARGV----LVLTVLLPPEELLRSSADFLQRLSA 1537 The following BLAST results are available for this feature:
BLAST of TCONS_00073669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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