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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073832 ID=TCONS_00073832|Name=TCONS_00073832|organism=Clytia hemisphaerica|type=transcript|length=1960bp
ATCGAcaatcaaagaaatattttgagtgGATCAGataATCTTCATTATGC
AGATGTGGACAGTGATTACGCTCATCCAACTATATGTCTCTGGCTCATTC
TGTCGACAATTTCTCAACAACATAGACGACGAAGACAGTTGGTATCCAAT
AGATTATTCGAGCGAATCTTCTGCTGAACACTCTATTGAGGATGAAACAT
ACAACAAATCACCATTTGTTTCAGAAAGAAGACAATATGCTGACCCTTTC
CAAGAAAACGATATGGAGCCAAACTTTTATGAAGAAATTGACGAAAATAA
GATGGTGAGAATCACAGGCTACGAAAATATACCAGCAGTTCGTCCAACAC
AAAAACAAGATACAACAGAAACAGCCACTACAACTGCTGCCCCAACTACA
CCTCATTCCCATAAACCATCTCGCACTAACTCTACTGACCAAACAAAACC
TGGAAATCTCGCtagaaaattgcaaaatgaagaagaagaccCGCTCTGGT
TCAAAATACACACACGAAGACGTAATCATAACAAGAATATCAATATTAAT
CATAACTCGAATGTTAATATTAACTCGAACCATAATTCCAATTCGAATCA
CAACTCTAACACAAATGTCAATATCAACCGTAACTCAAACGTGAATAGCA
ACTCGaaccataactcgaacacaaaCATCAACGTTAATCAAAACACTTTC
AGACCTTTCTACATTGGCAACTTCCCAAAACACTGGCATATGTGTGGTGG
ATACATCATCGACAACTTTTCGCAATTGTGTTGTCAAGGAAATCCAGTGA
ACAAACAACCATTTTCCATGTGCTGCGGCTCTGGGCTTTACAACTTGATC
ACGGAAGATTGTGTTTCTGGTTCACCCGTTGCCAAGAAGCTCCCAGAATG
TGGTTCATCTAAAACAACGTATGATGCTTTCAAACAGTTTTGTTACCATG
GCGATGTCTATGCTCACGAAAAATATGTGGAATGCGACGGTGCTTTGTAT
TATGTCTAAATTCTGTTAaatttttataatatatttaataattggagttt
ttttggaaaaatttaaaaatacaaaagtgTTCAAATCTCAGAATCGAATA
GGCCAATTGCAGGCACGATATTGTTCTTAAATGTTCTTAGTTTCAacatt
ctgagccttattgttcccttttaaaaatgtttcaataaagCCCACCGGAT
TCATGTAGtcgtgtttttatttgaaaatatagtattaAAGTGTTGTTAAA
GTactgtttttcctttttcaatcTCAATTACATTTTAAGGagctttttaa
gattttaatcaatcaattttttcattctttcaaaatatgtCAGCTTTTCA
GGCGCTCTCAGTCTACTTCACTTCACGGGCGcttaatgaaaattatcaaa
aaacacccctgtctcgcagatCCGGAAGAACCTCTCAATGGgagtgaaaa
tttctatcaaaatcccaatAGGCCCCAATAGGGATAGTTTAAAAAGTCCA
GTGAGAATAGTTTTGGGGtgtagtgtttttttcattgtatttcaaatggg
gataaaaaGTCAACCTTTCAGTGCGGTAGAAATTGCAGGGGACGTCGGGA
CAAAATTgtagtgaaaaaatttcaagtggtTAGTGGTCTCCGGGTTTGTG
ACATAGGGTTGACAAAAGCTAATATCAATCAGGAGTTGATTCTTGTATAA
TTGATATACAGCATTCTTTTATAAATTAAATGTCAGtaaaataacaaata
aaaacCTTCAATTTAATCTGAACATCTGAACTATACATCTACATCGAGTA
CCAAATCAACGGATGCACGGCATTTTAGGTAGAGCGAATAAGGAGAATGA
ATGTACCATGTATAAATCGGGGATCAATGGGGATTTGATTCTCTGTCAGA
ATTTTTCTGCCATGTGTCACGAGTGTTGAACCGCCCATCATCCGCCCATC
TGTGGGTGCG Run BLAST on NCBI protein sequence of TCONS_00073832-protein >TCONS_00073832-protein ID=TCONS_00073832-protein|Name=TCONS_00073832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MQMWTVITLIQLYVSGSFCRQFLNNIDDEDSWYPIDYSSESSAEHSIEDE
TYNKSPFVSERRQYADPFQENDMEPNFYEEIDENKMVRITGYENIPAVRP
TQKQDTTETATTTAAPTTPHSHKPSRTNSTDQTKPGNLARKLQNEEEDPL
WFKIHTRRRNHNKNININHNSNVNINSNHNSNSNHNSNTNVNINRNSNVN
SNSNHNSNTNINVNQNTFRPFYIGNFPKHWHMCGGYIIDNFSQLCCQGNP
VNKQPFSMCCGSGLYNLITEDCVSGSPVAKKLPECGSSKTTYDAFKQFCY
HGDVYAHEKYVECDGALYYV Run BLAST on NCBI transcript from alignment at scaffold_98:227577..231228- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073832 ID=TCONS_00073832|Name=TCONS_00073832|organism=Clytia hemisphaerica|type=transcript|length=3652bp|location=Sequence derived from alignment at scaffold_98:227577..231228- (Clytia hemisphaerica)
ATCGACAATCAAAGAAATATTTTGAGTGGATCAGGTAGGGTAATTTATCA
TATATGATAAAAGTTTGTTCATCATTAAATTTTTCAAATTCAGAAGTAAA
GGGCTGCCATTCGCTTTAGAATGCTAAAAATATTTTCTTTCCTGTGGATT
AGAGTTTTACTCCATGGCCATACAGGAGGTTCTCTCAGCGGACCGTCAAC
TCACGCAATCACGCATATTTTTTTTCCCAATTCACCCATTATCTGTTCAC
ACAAAGTCTTTCTATTCACACTCACGCGTAATTTTGTTAAACTTTCACGC
ATTCACGCAGGTGAAAAAACCCTTTCACGCATTCACACAAACCGCTGGGA
GGGTCCAATACAATGAGGAGCTTTCGCTAATTTGGACTTCTATTTTAATC
TTTTTACAAATTGAACTCTTTCTCAGCTCCTCTCAAGGGGCAACCTGCTT
TAGATGCTCCCTATAAGTAGGAAATGTGGCTCCCCTTTGAGTTCGAAACT
GTACTTTTGTTTTAATTTTCAGATAATCTTCATTATGCAGATGTGGACAG
TGATTACGCTCATCCAACTATATGTCTCTGGCTCATTCTGTCGACAATTT
CTCAACAACATAGACGACGAAGACAGTTGGTATCCAATAGATTATTCGAG
CGAATCTTCTGCTGAACACTCTATTGAGGATGAAACATACAACAAATCAC
CATTTGTTTCAGAAAGAAGACAATATGCTGACCCTTTCCAAGAAAACGAT
ATGGAGCCAAACTTTTATGAAGAAATTGACGAAAATAAGATGGTGAGAAT
CACAGGCTACGAAAATATACCAGCAGTTCGTCCAACACAAAAACAAGATA
CAACAGAAACAGCCACTACAACTGCTGCCCCAACTACACCTCATTCCCAT
AAACCATCTCGCACTAACTCTACTGACCAAACAAAACCTGGAAATCTCGC
TAGAAAATTGCAAAATGAAGAAGAAGACCCGCTCTGGTTCAAAATACACA
CACGAAGACGTAATCATAACAAGAATATCAATATTAATCATAACTCGAAT
GTTAATATTAACTCGAACCATAATTCCAATTCGAATCACAACTCTAACAC
AAATGTCAATATCAACCGTAACTCAAACGTGAATAGCAACTCGAACCATA
ACTCGAACACAAACATCAACGTTAATCAAAACACTTTCAGACCTTTCTAC
ATTGGCAACTTCCCAAAACACTGGCATATGTGTGAGTTCTAGATATTTCT
GACATTTTCTCTTTTAGCTCTAATACGCACTCCGCAGAAATAATTCGAAA
CAGGGTTTTCATAGTGAGATTGTTACAGTGGGCGAAGTAAGGCAACAATC
TTGGAAATATCTTGAAAATATGATATTTCCATTATACATTTGTAAATATG
AAACTATGACTTTTCTATATTTCCAAAGTTTAGGAAATATGATATTTCCA
AAAGTTGGAAATATTTTGAAAATATGTTATTTCAATGAATTTCAGGTTTG
GAAATATCATGAAATAAAAAAAAGTCATATTTTCATATTTACTAAAGTCT
GTCTCAAAATAATTTGCAGCTGATACAAAAATGGGTTGTAACTTTTGATA
GAATTCGAATTAAGTTATGACTTTGTGCTCATTGAAAAGATATTTGTGAT
TGGAATATTATCAAGCAAATGGTAAATAATTTTTTTTGCTTGATAGTATT
CCACTCACAAAAATCTTTTCAACAAGCACAAAATCGCAACTTCATTCAAA
TTCTATCAAAAGCTACAGCTAATTTTTGTCTCAGCTGCAAATTATTTTGA
GACAGACCTTAATGTATAATGCATGGATATCACATTTTCAAATTATTTCC
AAGATTGGAAATCTCTTAATTCGCCCAGTTTTAGTTTTATGGATTGAATA
AAACTAAATCGTGTATCTCGTAATACTTATTTATAGGAATTAGAAAGATC
TCCTGTGATCACTCTGAATACATTTGACATTGTTTTTATCAGGTGGTGGA
TACATCATCGACAACTTTTCGCAATTGTGTTGTCAAGGAAATCCAGTGAA
CAAACAACCATTTTCCATGTGCTGCGGGTAAGTTAATCTTTTTCAGAAGA
CAAGATTTATTTGAACTGAGAGTCCGTTATGTATTCCAAAACACCTTTTT
GACCATAGCCGCTAATTGCCGCGCGGACATTTTTTGTCCGTTTCATCCCA
CTAAAACCGTCCCAGTCGTTTTTTTTTTGCACCTTTATAGATAATAGAAA
AATGTGTCAAAAAAAGGATTGGATCGAGTTTAGTGGGATAATTAGATAAT
TAAATGACACGCACCTGACCGCGCGACTACGGTCGAAAAGGTGTATACGC
CCTTGTAATGATCAAAGCTCAGTGTCGATTTTGATTGGCGTTATGAAAAT
AATGCTGTGTACTTTTTGAATCTTCCTTTCTTGGCTGGACTAAAAGCCTT
TAACGGATCAATAAAACAGGGTTATTGTATTTTTGAAGCTATTCTTTTTT
CAAACTGAATTTACTTTCAGCTCTGGGCTTTACAACTTGATCACGGAAGA
TTGTGTTTCTGGTTCACCCGTTGCCAAGAAGCTCCCAGAATGTGGTTCAT
CTAAAACAACGTATGATGCTTTCAAACAGTTTTGTTACCATGGCGATGTC
TATGCTCACGAAAAATATGTGGAATGCGACGGTGCTTTGTATTATGTCTA
AATTCTGTTAAATTTTTATAATATATTTAATAATTGGAGTTTTTTTGGAA
AAATTTAAAAATACAAAAGTGTTCAAATCTCAGAATCGAATAGGCCAATT
GCAGGCACGATATTGTTCTTAAATGTTCTTAGTTTCAACATTCTGAGCCT
TATTGTTCCCTTTTAAAAATGTTTCAATAAAGCCCACCGGATTCATGTAG
TCGTGTTTTTATTTGAAAATATAGTATTAAAGTGTTGTTAAAGTACTGTT
TTTCCTTTTTCAATCTCAATTACATTTTAAGGAGCTTTTTAAGATTTTAA
TCAATCAATTTTTTCATTCTTTCAAAATATGTCAGCTTTTCAGGCGCTCT
CAGTCTACTTCACTTCACGGGCGCTTAATGAAAATTATCAAAAAACACCC
CTGTCTCGCAGATCCGGAAGAACCTCTCAATGGGAGTGAAAATTTCTATC
AAAATCCCAATAGGCCCCAATAGGGATAGTTTAAAAAGTCCAGTGAGAAT
AGTTTTGGGGTGTAGTGTTTTTTTCATTGTATTTCAAATGGGGATAAAAA
GTCAACCTTTCAGTGCGGTAGAAATTGCAGGGGACGTCGGGACAAAATTG
TAGTGAAAAAATTTCAAGTGGTTAGTGGTCTCCGGGTTTGTGACATAGGG
TTGACAAAAGCTAATATCAATCAGGAGTTGATTCTTGTATAATTGATATA
CAGCATTCTTTTATAAATTAAATGTCAGTAAAATAACAAATAAAAACCTT
CAATTTAATCTGAACATCTGAACTATACATCTACATCGAGTACCAAATCA
ACGGATGCACGGCATTTTAGGTAGAGCGAATAAGGAGAATGAATGTACCA
TGTATAAATCGGGGATCAATGGGGATTTGATTCTCTGTCAGAATTTTTCT
GCCATGTGTCACGAGTGTTGAACCGCCCATCATCCGCCCATCTGTGGGTG
CG Coding sequence (CDS) from alignment at scaffold_98:227577..231228- >TCONS_00073832 ID=TCONS_00073832|Name=TCONS_00073832|organism=Clytia hemisphaerica|type=CDS|length=2889bp|location=Sequence derived from alignment at scaffold_98:227577..231228- (Clytia hemisphaerica)
CTCTGGGCTTTACAACTTGATCACGGAAGATTGTGTTTCTGGTTCACCCG
TTGCCAAGAAGCTCCCAGAATGTGGTTCATCTAAAACAACGTATGATGCT
TTCAAACAGTTTTGTTACCATGGCGATGTCTATGCTCACGAAAAATATGT
GGAATGCGACGGTGCTTTGTATTATGTCTAAGTGGTGGATACATCATCGA
CAACTTTTCGCAATTGTGTTGTCAAGGAAATCCAGTGAACAAACAACCAT
TTTCCATGTGCTGCGGATGCAGATGTGGACAGTGATTACGCTCATCCAAC
TATATGTCTCTGGCTCATTCTGTCGACAATTTCTCAACAACATAGACGAC
GAAGACAGTTGGTATCCAATAGATTATTCGAGCGAATCTTCTGCTGAACA
CTCTATTGAGGATGAAACATACAACAAATCACCATTTGTTTCAGAAAGAA
GACAATATGCTGACCCTTTCCAAGAAAACGATATGGAGCCAAACTTTTAT
GAAGAAATTGACGAAAATAAGATGGTGAGAATCACAGGCTACGAAAATAT
ACCAGCAGTTCGTCCAACACAAAAACAAGATACAACAGAAACAGCCACTA
CAACTGCTGCCCCAACTACACCTCATTCCCATAAACCATCTCGCACTAAC
TCTACTGACCAAACAAAACCTGGAAATCTCGCTAGAAAATTGCAAAATGA
AGAAGAAGACCCGCTCTGGTTCAAAATACACACACGAAGACGTAATCATA
ACAAGAATATCAATATTAATCATAACTCGAATGTTAATATTAACTCGAAC
CATAATTCCAATTCGAATCACAACTCTAACACAAATGTCAATATCAACCG
TAACTCAAACGTGAATAGCAACTCGAACCATAACTCGAACACAAACATCA
ACGTTAATCAAAACACTTTCAGACCTTTCTACATTGGCAACTTCCCAAAA
CACTGGCATATGTCTCTGGGCTTTACAACTTGATCACGGAAGATTGTGTT
TCTGGTTCACCCGTTGCCAAGAAGCTCCCAGAATGTGGTTCATCTAAAAC
AACGTATGATGCTTTCAAACAGTTTTGTTACCATGGCGATGTCTATGCTC
ACGAAAAATATGTGGAATGCGACGGTGCTTTGTATTATGTCTAAGTGGTG
GATACATCATCGACAACTTTTCGCAATTGTGTTGTCAAGGAAATCCAGTG
AACAAACAACCATTTTCCATGTGCTGCGGATGCAGATGTGGACAGTGATT
ACGCTCATCCAACTATATGTCTCTGGCTCATTCTGTCGACAATTTCTCAA
CAACATAGACGACGAAGACAGTTGGTATCCAATAGATTATTCGAGCGAAT
CTTCTGCTGAACACTCTATTGAGGATGAAACATACAACAAATCACCATTT
GTTTCAGAAAGAAGACAATATGCTGACCCTTTCCAAGAAAACGATATGGA
GCCAAACTTTTATGAAGAAATTGACGAAAATAAGATGGTGAGAATCACAG
GCTACGAAAATATACCAGCAGTTCGTCCAACACAAAAACAAGATACAACA
GAAACAGCCACTACAACTGCTGCCCCAACTACACCTCATTCCCATAAACC
ATCTCGCACTAACTCTACTGACCAAACAAAACCTGGAAATCTCGCTAGAA
AATTGCAAAATGAAGAAGAAGACCCGCTCTGGTTCAAAATACACACACGA
AGACGTAATCATAACAAGAATATCAATATTAATCATAACTCGAATGTTAA
TATTAACTCGAACCATAATTCCAATTCGAATCACAACTCTAACACAAATG
TCAATATCAACCGTAACTCAAACGTGAATAGCAACTCGAACCATAACTCG
AACACAAACATCAACGTTAATCAAAACACTTTCAGACCTTTCTACATTGG
CAACTTCCCAAAACACTGGCATATGTCTCTGGGCTTTACAACTTGATCAC
GGAAGATTGTGTTTCTGGTTCACCCGTTGCCAAGAAGCTCCCAGAATGTG
GTTCATCTAAAACAACGTATGATGCTTTCAAACAGTTTTGTTACCATGGC
GATGTCTATGCTCACGAAAAATATGTGGAATGCGACGGTGCTTTGTATTA
TGTCTAAGTGGTGGATACATCATCGACAACTTTTCGCAATTGTGTTGTCA
AGGAAATCCAGTGAACAAACAACCATTTTCCATGTGCTGCGGATGCAGAT
GTGGACAGTGATTACGCTCATCCAACTATATGTCTCTGGCTCATTCTGTC
GACAATTTCTCAACAACATAGACGACGAAGACAGTTGGTATCCAATAGAT
TATTCGAGCGAATCTTCTGCTGAACACTCTATTGAGGATGAAACATACAA
CAAATCACCATTTGTTTCAGAAAGAAGACAATATGCTGACCCTTTCCAAG
AAAACGATATGGAGCCAAACTTTTATGAAGAAATTGACGAAAATAAGATG
GTGAGAATCACAGGCTACGAAAATATACCAGCAGTTCGTCCAACACAAAA
ACAAGATACAACAGAAACAGCCACTACAACTGCTGCCCCAACTACACCTC
ATTCCCATAAACCATCTCGCACTAACTCTACTGACCAAACAAAACCTGGA
AATCTCGCTAGAAAATTGCAAAATGAAGAAGAAGACCCGCTCTGGTTCAA
AATACACACACGAAGACGTAATCATAACAAGAATATCAATATTAATCATA
ACTCGAATGTTAATATTAACTCGAACCATAATTCCAATTCGAATCACAAC
TCTAACACAAATGTCAATATCAACCGTAACTCAAACGTGAATAGCAACTC
GAACCATAACTCGAACACAAACATCAACGTTAATCAAAACACTTTCAGAC
CTTTCTACATTGGCAACTTCCCAAAACACTGGCATATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073832-exon-scaffold_98-1575043694:231195..231228 | TCONS_00073832-exon-scaffold_98-1575043694:231195..231228 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1575043694:229998..230706 | TCONS_00073832-exon-scaffold_98-1575043694:229998..230706 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1575043694:229152..229236 | TCONS_00073832-exon-scaffold_98-1575043694:229152..229236 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1575043694:227577..228708 | TCONS_00073832-exon-scaffold_98-1575043694:227577..228708 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1510915933:231195..231228 | TCONS_00073832-exon-scaffold_98-1510915933:231195..231228 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1510915933:229998..230706 | TCONS_00073832-exon-scaffold_98-1510915933:229998..230706 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1510915933:229152..229236 | TCONS_00073832-exon-scaffold_98-1510915933:229152..229236 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1510915933:227577..228708 | TCONS_00073832-exon-scaffold_98-1510915933:227577..228708 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1491911889:231195..231228 | TCONS_00073832-exon-scaffold_98-1491911889:231195..231228 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1491911889:229998..230706 | TCONS_00073832-exon-scaffold_98-1491911889:229998..230706 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1491911889:229152..229236 | TCONS_00073832-exon-scaffold_98-1491911889:229152..229236 | Clytia hemisphaerica | exon |
| TCONS_00073832-exon-scaffold_98-1491911889:227577..228708 | TCONS_00073832-exon-scaffold_98-1491911889:227577..228708 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_98 | supercontig | scaffold_98:227577..231228 - |
Blast
The following BLAST results are available for this feature:
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