XLOC_001988 (gene) - C. hemisphaerica

Overview
NameXLOC_001988
Unique NameXLOC_001988
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000030:527783..537202+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001988 ID=XLOC_001988|Name=XLOC_001988|organism=Clytia hemisphaerica|type=gene|length=9420bp|location=Sequence derived from alignment at sc0000030:527783..537202+ (Clytia hemisphaerica)
ctgggtttctgatcagagactctttcatttggtgggttcgaatcccggtc
gggtcgatatttggagaaagtttgaaatatcaaattcatagaaaagttag
tagaaatcGgaaaacaagtctcagaaagtcagaaaatagaaaaggagata
gagagataggaagtagaaaaacaGAAGAGTGATGTTCGATTGACGGTCAA
TTTCTATCACCTTCCCGGAATTTCATTAGCGCGCGGAAAAAACTTAAAGT
TTCTTGAATTATTATTTATAACCCAGACTCAAGTGTAAACAGTTTATTAG
GTCACAATTAGTGTTTTCATAAATTAATTGCTGaatttaagttttattta
aGTATTACAACACAATTGATTTTAGTTAAATTTCTAAAATCATCAATTTA
TATGAAACAGGTATATAGTTACTCAAAATTACAAGTCTGTAAAATGTACA
ATCCATTGTTTACATCTGATGATAATGGATGAGATCTAACACGGGCTGTA
AACAAAAGCTCCAAAATTTCCACATCATCAGTCACTTTTCACTCTTTTCC
ACAGTCAAATCAGAGTGACGAAGTGACGAAGGCTGAAATTTTCTCGACAA
AATGAAGGCAATTTTCCTTCTTGCCAGTCTTCTCCTGGTATCATTATGTA
AAGCTGAGTACAAATCTGCAAGACTCGAGGTAAAAGCTTCAGCTTCTTCT
CTTCTTCCAGGGGGGTTTGAGCTTTTGGATTTTCCCACCAAGATGTTTTT
GTTgttcattttttataatttccaaGGGGATCATTAAGGTTTTGATGCCC
TTCCAGGAGTTATTAAAGATTTCCAGTGGGTTCTTTTCGTTCGTTCTTTT
CACTTGAGGTGgcataaaaagttattttccagcccctttttcacaaaatt
ttacttTCCACAGAGGGTTCTTCCCCCTAATTTTCTAGGGGATATATTCA
GGCGTACCCAATCGATAACATCGATTGTGGATTTAATCGATGTCAATCGA
TAAAAGTCGTTCGTAATCGATGATCGATCGATTACTAATCGATGGCCGAT
CGATAGGaacgtaaaattttattatcgaTTGGTATCGATGTTCATCGATT
AAATTCGATTATTATTAGCCATCGATTGAATTCGATTGTTATTGATTAAG
ATCGATTGCGATCGATTGTGCTAATTTTCTGTATGTATGATCGCTACTCT
GTGTggtgtaccagagtgtatctcacgataaTATGGTAGCgtactttaag
ggaagaaattttcgcgaaatttaatttcgcggttttctgAACTTGACCAC
GAAACCGCGAAATTATCATGCAATAAAGTATTTCGACGGCCGGATGACTA
TTCTGACGACCAATTTTCCACCGGTCGGTGGACGACTATCCACCGACCGA
ATAACTATCTCGATGGCCGAATTTCCCGCAATTCTAACCCTCTTGGCGAT
CAGGGCTTGGGTAGAATCACACAAACAAATCACTGTATTAATCGGATTAA
TGCACAGGGGAATAGGAATGGCCAAATACCATGTACCGTGGTTTATCTAA
TTTAACGCGTAGTCTAATTTAACGCGTACCCTGTTATGGCGAAAAATCGT
AATTAATCTTACTCTAATTATTAACACGTagccaaaattctgcataatta
atTTCACTCTAATTATTACGCGTGATCAAGCcttgtaccgtgaaaagcac
aggtcaaaatcatatattgacgctgtgccgacgaatcgatattctattca
tcgcgcaatcaacgaagacaaaagtaaccatgccgaccatccaagatctt
ggatgaagttcaaagttgatatttttattcccgtcgttaaaaacacaaca
aaaaatatcatcaatgctttttaaaaagagtcagtgatagagaatcataa
cataaagtctgtctattatttcgattcaattaaaagtgacatttccataa
ttactAGTTTattaattactgttatacatttggggattatgtaaaagatt
tctttcgaaagaaattcacttcgattacacttggaggtttctggggaatt
cgtaaatagtaaactgcatacggatacagtctgctagacattaataaggt
aatatttgctcttcatctttgattctttctacagtgattagattgacaca
tgcgcgataaaatttctattattggtcttcagaggttaatatattctttg
aaaacttaacctctgatactcagggtacaagCCTTGGACAAGAAAAATTA
GACaggaaagttttatttttgataaacttctttctttcaaaaacacaaat
taAAGGGATCTTCGTCATCCTCCTCTGGCTCCTCCAAATCAGCTAATGCT
TGTTAATACATTATACAATCTATATGTAATATATATTACACTGGCCTTTA
ACGCGTACTTAAAACACTTGAATATTGTAAGTAATTGTTCTCTAGTTTTT
CACGCGTATCAGCgtcgaaaataattatttattgccacacgttaaattag
aaaaaccacggTAGGGTTGCGTTTTTAGCGAATATAAAGAAATCGATATT
GCTATCGCAATCGATAACAATCAAATCCAATCGATAAGAACGTAAAGTCT
TGGTATCGATTGGCTATCGATTGCTTatcgattagttatcgatcactatc
gattattatcgattaaaatcaattaatatcgattgatttcccgtatcgat
ttcatcgattgggtacgcctggatatataaataaattccattcaaaattt
tcagggggattgatttctatttctatttttctatttttatatcagtcagg
cacatcctggcaaatgaacggggtatttttcacttgcgaccattggcaat
gaacggggtcgaaaatgaaagtgacgtaatagcgcagaatacccagttta
attgaaccggttggaaatattttgcttcatttcaaagaactgcatagatg
aaattttccatgtgtcaattttgtcttcgaagattgaagaaacttttaat
gaaaaaataaagttcccagttttcttccttttttctttttttcagtttga
agttcatttttattcattttcacgcttttagcctgagacgtcctatctca
tttacactgggtgacgaataccccatgcNACTCCAAAACATATAATAAAA
GATATGAAGATTCTTTATACAAATCCAGATCAGTTAACATCgtttaagaa
aaaagaattacaGTCCATAGCCCGGGAAGANcatttgccaggatgtgcct
gactgtataTTAGCATgaattttttccgagttattttcgcTGATGgaaca
ataacaaaaaatttctttaaaaaatcaaaaaatctgtaTTTTTTCACCTA
AACTAGAGCTCTAATCCACTATTCCTCAACATTTCCGGATGGACGAGGAC
ACTACAGCCGACACCTCCATAGACGATNATTCGATGACTACAAAATCGCT
AGCCAAGTTAACCTAGATACAGATCAAGGGCGTGGCATTGTCATATTTGT
CCATATATCCATTAAACACTTGGTAATAGATGTCAAGCCTCCAGTGATTT
TCAATGAAGTTTGCATGATTGAAGTACAACTATCAGGAAAAGATTTGCTC
GCTGTTGCATGCATTTATCGAAGCCCAACTAGATCTACGTCCTCCaacga
aaacaacaacaacctaAACTTATTGATCAAGTCCATTGcattaaacaaga
aatattCGCACAAATGTTTGTTAGGTTATTTAACTTTCCAACAATCAATT
GGGAAAACTGGACCACCCCGCATCTGGAGGATAGCAAAGAAGAGAAATTC
TTAAATGCTTTGAGAGACGCACATCTCCATCAACATGTTAATGAACCAAC
TCGATGTAGAGGAACTGATGACCCATCCCTCATCGACTTGATCTTAACAG
GCGAAGAAAACCAAATTAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNaaaaaaataataaataaatgaaaaaa
tattaagtaaggagcaaaaaaaaatgtatatagTGTTTTCCGGAAACTGG
CCATTTCTGACTCGGCCGTAGACTATGGCTTCATCTATATCATTCATCAT
AAAGgaaatcaagttgaccgttcaagtTCGTTgtacatgaattttttttg
gaatagcctaATAAAGGGAATAGATATAGGCCACTCCAATTGTTTCAAGT
GGTTTCAATATATACTAAATTTTGCGTCTCACTGgctttttattcttatt
ttcagacTTGTGGTGGGTGACGATTGAACCGCCTTCCTAAGGTAATAAAT
TCTCNAAAAAAGATCTCGGTGTTCTGATAGACTCTGACTTATCCTTTGAA
GAACACATATCAAACCAAGTGAAAAAAGCTAATTCCATTCTAGGAGTCAT
CAGAAGAGGTTTCGAAGACCTTAgcctttaaaactttcttcactCTGTAC
ACAACCTTTGTCCGGCCTCATCTCGAGTATGCCCAATCTGTATGGTCACC
AAAACTACGTAAGGACATCAACTTGATTGAGGGCGTTCAACGACGTGCCA
CTGGGATGGTCAGAAGGTTAAGTAATCTAGCATACGAGCAGCGCCTACGA
AAACTTGACTTGCCTTCTCTCGAATTCAGAAGACACTTCGGAGACATGGT
TCAGATCTACAAACACTTGCACNCTTACTACTTCTTACCTTGTAAtactt
tgtttttgattttgtactttATGATACTCATCCAATTTGTGGAATCTGAT
GATTTGAGGAATACTATATTAATCTTTAATCTTAATTTTATgaggaaaaa
cttttaaacaccGTACATAGTCAGATAGGggaaaattgagttttgattta
acttgTGCATCATATATTTTTGCTGTATTCCATGGAATATGCAGCTATTT
ATATTTAATACTAATCTTTTATAGGTGAAGGCTTTCATCAATGATCATGC
CAATCTTTAGtatcttttcaaagaaaacttATATTTTAATGGTAATTGAT
AAGTTTAAAAGTCTCAAAATTTTTGTGCCTCTCAAATAACAGACCTTTGG
CTATACACTTACATCCTAAATGGACCAATTGTTACTGTGTTGGTGCTACA
GCCCTCAAATTAGGCCCAAAATGgtccttggaaaaaagtaggattataTT
GTAATGGAACAATGATATATAGCTCTCTCATACACACAAATAGCAAAAAA
CTAGTTTTCAGGTCAACATTTGGCTGAAAACtgctaaaaatgacattttg
cctgagtgaaaagtttgaaatatgTTGTGTTGGTGTTACAACCCTAAAAT
TGGACacaaaatgttccttggagAAAAGTAGAATTGTAACAGTTAAATAT
CGtacacaaaaaattcaaaaaattgtgatttatggggcaaaattgaccaa
aaactGGAAAATGGGGTTTTGCCTGAGAAACAATATAATCTGAAATCTTT
TCTGATGGTGCCAAAAAGCAGAAATTAGACTTCGAATGCTCTTTGTAATA
AACTAGGATTATGATACATATAccaattgtattttaagctcatTATCATA
CATGTAACTATGAAAGATTTTCAGGTTAAACTGactgaaaaatgcaaaaa
atgggGTGTTCTGCCTGCGAAAATGTAATGTTCAAAACCCACTTAGAAAA
TTTAGGATTATAGATCTTCTGAAAATTCCCTCAATACCACGCAACACCTG
CAGCATTTTTAAGTGGGTTGGACAAAAAGGTCAATGTCTGACTTGTATCT
CATATTTCCTTAAAGATATCACCTAGAATCAGTATtctttatcatatttt
ttcttAACTGtccttttttataaataaagccaaaattttcaagtaaAATA
TATTGGTGGTGCAGATCCTGAACTCGTTTTTGTCAAAAATGACGATTCAG
AAGAGGTATACAAATTTTAGGCTTTATTCTCGATATATTTGAATCTCTCA
AATCTACTTTAGGAGTCAAATTTAGGGGTCTATTCATGATTAAATTTATT
CCTAGTCAAATGTTCAGTCAAATAACAAAGGTACTTTGCAACTTGTTAAA
AACTTGCTAAATCTCCTATAAGTGTTTTCATTGAAAggtaaagattttat
tttaagaaatatattCTAGCAATAACTATGTTATATTGATTTTTCTCCAG
CGAATTGCAGTAGCAGATATGGACACAGAGAAAATCTGTGAAACGGTTGA
ATCGAAAGGATTCACAAAGAAGGAACAAGAAGATGTTCCACCACCCCCTC
ACGATGACGAATTGTAAATAACTAAAACTTTTAAGTGCATTTTCGTATAA
AATATCCCATAGATTTCTCGTGgcagtttttaaaaacattcatCAAATTT
ACTAAGTTTTATATTTCATTTGTCCAATTTTactactttttaaaaaatga
cgtttcGTTGTATTCTTTGTATGGATTTGACAGAAAACTATAAATTCTCA
GGGTTCATGTGTCTGGAAAAATAGtgatataattttatttttaggttTAG
TTCAATTTTGTATTTGTATTTGTAGAGATTTGTACGTCACTGTTTTTCCA
GGTGCATAATAATGCCTGAGCTTTTGCTTTTAAAAATTGCCACAAGATCA
TCTATATTGGGGACgaacaatatatttttttactttattcaTATTTGGAA
AAGTTCTATGATGAATTTATAGTCAACCCAATTTTAGGACACTGTAAGTT
TTGATATCCAGTTTAGTATAAacttttataactttttttatggatttaga
aaaataaatttgtttgaacATAATATTATTTACTCTTTCCATTCGAGTCC
ATCTTATTCTCAGttaattattatatttttatagtGCATCTGAGTGCATT
CATATAAGCTAGTAATAAGGATTTAAATAAAACGCCCTTTAAAAATGTTT
CTCCTTTTCTAAGAGTTAAATGTGTCTTAAAATGTGCTTAAATACTCCTT
CAGAGTCTAGTTTTCTAGGACACTATGTATATCAATATTGtctttaagct
tttttcacatgtacgtaaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003560TCONS_00003560Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:527783..537202 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.49	12.12	11.2	10.34	17.75	12.39	30.2	30.95	49.78	35.04	43.04	41.34	41.69	41.05	69.17	62.36	75.37	82.96	36.52	36.51	52.36	52.45	48.74	43.15	35.18	41.23	42.04	41.51	73.87	71.33