TCONS_00005664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005664
Unique NameTCONS_00005664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length891

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005664 ID=TCONS_00005664|Name=TCONS_00005664|organism=Clytia hemisphaerica|type=transcript|length=891bp
TTACCAGCAAGTCCTCCCTGAGTAGGATAGTGGGTTGGACCGTTTGTTGT
CGGTGCAAAAGTCTCTGGGGCTGCTGTGGGAGCTTCTGTTTCTGGGGCTG
CTGTTGGAGCATCAGTTTCTGGAGCTGCTGTAGGAGCTTCGGTTTCTGGA
GCTGCTGTTGGAGCTTCGGTTTCTGGAGCTGCTGTAGGAGCTTCAGTTCC
TGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCTGCTGTAGGAGCTTCGG
TTTCTGGGACTGCTGTAGGGGCATCAGTTTCTGGGGCTGCTGTAGGAGCT
TTGGTTTCTGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCAGCTGTTGG
AGCTTCGGTTTCTGGAGCTGCTGTAGGGGCATCAGTTTCTGGTGCTGCTG
TAGGAGCTTCGGTTTCTGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCT
GCTGTAGGAGCTTCGGTTTCTGGAGCTGCTGTAGGAGCATCAGTTTCTGG
GGCTGCTGTGGGAGCTTCAGTTTCTGGGGCTGCTGTAGGGGCATTAGTTT
CTGGGGCTGCTGTGGGAGCTTCGGTTTCTGGAGCTGCTGTGGGAGCTTCA
GTTACTGGGGCTACTGTAGGGGCATCAGTTTCTGGGGCTGCTGTAGGAGG
CTCAGTGGCTGGTTCAGTTGGTGGTTCAGTGGGTGGCTCGGTTGGTGGTT
CAGTTGGTGGCTCGGTTGGTGGTTCAGTGGGTGGTTCAGTTGGTGGTTCG
GTTGGTGGTTCAGTGGGTGGTTCAGTTGGTGGCTCAGTGGGTGGCTCGGT
TGGGGGCTCGGTTGGTGGCTCGGTTGGTGGTTCAGTGGGTGGTTCGGTTG
GTGGTTCAGTGGGTGGCTCGGTTAATGGGGCATCAGTTCCT
Run BLAST on NCBI

transcript from alignment at sc0000054:610156..611829-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005664 ID=TCONS_00005664|Name=TCONS_00005664|organism=Clytia hemisphaerica|type=transcript|length=1674bp|location=Sequence derived from alignment at sc0000054:610156..611829- (Clytia hemisphaerica)
TTACCAGCAAGTCCTCCCTGAGTAGGATAGTGGGTTGGACCGTTTGTTGT
CGGTGCAAAAGTCTCTGGGGCTGCTGTGGGAGCTTCTGTTTCTGGGGCTG
CTGTTGGAGCATCAGTTTCTGGAGCTGCTGTAGGAGCTTCGGTTTCTGGA
GCTGCTGTTGGAGCTTCGGTTTCTGGAGCTGCTGTAGGAGCTTCAGTTCC
TGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCTGCTGTAGGAGCTTCGG
TTTCTGGGACTGCTGTAGGGGCATCAGTTTCTGGGGCTGCTGTAGGAGCT
TTGGTTTCTGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCAGCTGTTGG
AGCTTCGGTTTCTGGAGCTGCTGTAGGGGCATCAGTTTCTGGTGCTGCTG
TAGGAGCTTCGGTTTCTGGAGCTGCTGTGGGAGCTTCGGTCTCTGGGGCT
GCTGTAGGAGCTTCGGTTTCTGGAGCTGCTGTAGGAGCATCAGTTTCTGG
GGCTGCTGTGGGAGCTTCAGTTTCTGGGGCTGCTGTAGGGGCATTAGTTT
CTGGGGCTGCTGTGGGAGCTTCGGTTTCTGGAGCTGCTGTGGGTGCGTCG
GTCTCTGGGGCTGCTGTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGTGC
TTCGGTCTCTGGGGCTGCTTTAGGAGTTTTGGTTTCTGGAGCTGCTGTAG
GGGCATCAGTTTCTGGGGCTGCTGTGGGAGCTTCAGTTACTGGGGCTACT
GTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGTGCTTCGGTCTCTGAGGC
TGCTGTGGGAGCTTCAGTTACTGGGGCTACTGTAGGGGCATCAGTTTCTG
GAGCCGCTGTGGGTGCTTCGGTCTCTGAGGCTGCTGTGGGAGCTTCAGTT
ACTGGGGCTACTGTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGTGCTTC
GGTCTCTGAGGCTGCTGTGGGAGCTTCAGTTACTGGGGCTACTGTAGGGG
CATCAGTTTCTGGAGCCGCTGTGGGTGCTTCGGTCTCTGAGGCTGCTGTG
GGAGCTTCAGTTACTGGGGCTACTGTAGGGGCATCAGTTTCTGGAGCCGC
TGTGGGTGCTTCGGTCTCTGAGGCTGCTGTGGGAGCTTCAGTTACTGGGG
CTACTGTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGTGCTTCGGTCTCT
GAGGCTGCTGTGGGAGCTTCAGTTACTGGGGCTACTGTAGGGGCATCAGT
TTCTGGAGCCGCTGTGGGTGCTTCGGTCTCTGAGGCTGCTGTGGGAGCTT
CAGTTACTGGGGCTACTGTAGGGGCATCAGTTTCTGGAGCCGCTGTGGGT
GCTTCGGTCTCTGAGGCTGCTGTGGGAGCTTCAGTTACTGGGGCTACTGT
AGGGGCATCAGTTTCTGGGGCTGCTGTAGGAGGCTCAGTGGCTGGTTCAG
TTGGTGGTTCAGTGGGTGGCTCGGTTGGTGGTTCAGTTGGTGGCTCGGTT
GGTGGTTCAGTGGGTGGTTCAGTTGGTGGTTCGGTTGGTGGTTCAGTGGG
TGGTTCAGTTGGTGGCTCAGTGGGTGGCTCGGTTGGGGGCTCGGTTGGTG
GCTCGGTTGGTGGTTCAGTGGGTGGTTCGGTTGGTGGTTCAGTGGGTGGC
TCGGTTAATGGGGCATCAGTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003201XLOC_003201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005664-exon-sc0000054-1575043694:611248..611829TCONS_00005664-exon-sc0000054-1575043694:611248..611829Clytia hemisphaericaexon
TCONS_00005664-exon-sc0000054-1575043694:610156..610464TCONS_00005664-exon-sc0000054-1575043694:610156..610464Clytia hemisphaericaexon
TCONS_00005664-exon-sc0000054-1510915933:611248..611829TCONS_00005664-exon-sc0000054-1510915933:611248..611829Clytia hemisphaericaexon
TCONS_00005664-exon-sc0000054-1510915933:610156..610464TCONS_00005664-exon-sc0000054-1510915933:610156..610464Clytia hemisphaericaexon
TCONS_00005664-exon-sc0000054-1491911889:611248..611829TCONS_00005664-exon-sc0000054-1491911889:611248..611829Clytia hemisphaericaexon
TCONS_00005664-exon-sc0000054-1491911889:610156..610464TCONS_00005664-exon-sc0000054-1491911889:610156..610464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:610156..611829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.5403	2.33941	0.877392	0.428407	0.20078	0.0397604	0	0	0.00634872	0	0.0527034	0	8.03991	9.84588	0.0464472	0.0544359	2.95794	3.28885	54.3236	57.5874	22.6399	41.15	5.41749	12.2951	8.4458	4.85341	0	0	0	0.273577
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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