XLOC_030759 (gene) - C. hemisphaerica

Overview


Name	XLOC_030759
Unique Name	XLOC_030759
Type	gene
Organism	Clytia hemisphaerica (Jellyfish)

Sequence

The following sequences are available for this feature:

gene from alignment at scaffold_142:971161..985080+

gene from alignment at scaffold_142:971161..985080+

Legend: gene

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_030759 ID=XLOC_030759|Name=XLOC_030759|organism=Clytia hemisphaerica|type=gene|length=13920bp|location=Sequence derived from alignment at scaffold_142:971161..985080+ (Clytia hemisphaerica)
AGCTGGAATACAAAGTTTATTCATTTGACCAAGGTCACCGGCGTTTGGCT
CGAAGCAAGGAAATTTTCACACCACGATCGATCCAGAGCAAAgcacaagt
aaaaaaaaaagaaatgacctaatttgtaatttgtaaaaattataagtttt
aaattttaactGCCAATAGTTCACAATACAAATGTAAATTTTAAGGAATT
TATAGTAATGGCCACtggtatttttcaaattgaaggaGATTTCCACAAAG
ATGGAAGCGATGAAGATGATTATGAAATTTCAGATGACGTGAGTTGAGTT
TGTTTgctgtttattttatttaagaGCATTAAAACAAATACCTTCATTTT
GCAtagattgggccattccagaaaaaaaaacattatcccCTAATGGAcaa
catcaatttttaaaataaattttggcacagaattccaggcaaactttagA
GTGACGAAAGTAATATCGAAATTCTATCTTAATAActttgcattaaagta
ttggaattccacGAATTTTTTAGGTTTTACAGTAACAGAATTGCACAGTT
TTtataggtattttgtaaatttgttacagAAATTCcagactttcttgaaa
gcaatttgctacgggCTACGGGCAATGGCATGGGGATTttcaggaccctg
ccgacgcaccggactgtccggtgtatttgtccggtggcaaaaagtatcct
ttcgctacaccggacgcaataagtctggTGTCAGTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGtctg
gtgtcagtccggtgttgcatacagggaattttggacgccggacatttatg
aaacaaaaaattaagaaacaccggacccACCGGACTGGCCAtttccggtg
ttttgattgtccggtgggaaaaatatccttctccgacatcggacatccga
cttccttaagttcggtgtagaaattgtccggtggtaaaaaaaattctcat
tttacaccggcctttcgcgtgtccggtgttcgttaagtccggtgcgtcgg
cagggtcctggaTTTTCATGTCgtacagggctgcaaataaatatttttag
tcaatcggacatcatgtccgacagaaatgaaatcctgtcggtcaaactca
aaatcctgtcggtcattcagtgtatatttttccagacccgatcaatcgaa
cttgtcgaaccaatcgaacaatcgaattACTCGAACTCCATCGGACCATT
aaagttcaattaaaaaaattaatcgaactctaagattttttaaaagattg
tgagtgttcgattaagttcgatcaatgggtttcggttcgatcagttcNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNaccgtatattagcttcttttcaaagccaaattcggaatgtaa
atcaggaaattacttccgataacggattacacacttttcctgtatcctta
tAGCGCCAGAGGCGgggtttgttggggcgtagtattccaccactcggccg
cgcgcgaaatcgcaacagagggggctacggactttattccggatTAGACA
AATATCTGGGTACAATAAACGTCgagctgttaagtccgggagctgtcgaa
atggcaatcacgtgccaggacaaagtttttgcaagcgagggaagatatat
gaggatttaatattatcgaactaatcgaactttttactgaccgaactaat
cgaactgctattgcttcaaaaattgtgagtgttcgattaggttcgattaa
tttttttaatcgaactttaatcgttcgatggagttcaattagttcgattg
ttcgattgatcgggtctggattTTTATATAGTTACGGAGAaagtaggaaa
aataaaagttacctttgaacagtttgttactgtatataacagagaaattg
attcgataaaagtgatcttagaaacacccttggaagttaagaagaaagca
agttgataaaagttaacttagaaacactcttgaaagttatgaagtaagca
agttgatgaaaatggtcttaaaaaaactcttgaaagttatgaagaaagcg
agtcgataaaagtttaactttgaaacacccttgaaagttacgaagaaagc
aaattgatgaaagtgatcttagaaacaaagaagtttacgaagaaagcaag
ttggcAAAAGTAATTCAGAAACACCCTTAaaagagttacaaagaaagcgg
gttgataaaagtgatcttagaaacaaagaaagtaacgaagaaagcaagtc
gataaaagttaacttagaaacaccctgaaagctacaaaggaagcgcgtat
taaaagaataggctaagtaagagacaagggtgtaagagatttattttcaa
ctctcaagttaatggtttattccttttttcattcggacatcacgaccgac
acaaaagattttcagtcggtcaaatagctttatcagtcggacattgaccg
atgaccgaCGCTTATTTCCAGCCCTGGTCGTACGTTTGGGGGTAACATAt
aaactggaatggcccattcctCTTCCTGCGCTATTGAGATTTTCTTGGCT
TTTCTAGGACTTTTCTGCTTTTTCCTGGGATAACCACCACTGTACTAAAA
AATCTTCTGCAGGCTTGCGAAACTGCCTAAAACTTTCCATCCAAAGCTTA
TTTTTTAACTACCCTGCTGGTCTTTTTCTGATCAGAAAAGTGGCCAGTTC
GGGTCAGGTTTATGAAGAGGAAAATCCAAGACTTTATGGGCTAAACTCAG
CCAATCTTTGATGTTTTTTTGGCCAAAAGAAAGTTTTGCTTTTCCTAGTT
TTGATTTTCAAGTGCTttgtttatcgcgcaatttttgcgtcacacaaaat
TTTCGTGtatattaaatttcgcgattcactaaactaggtattttcagaaa
gtgggaatataaagcaagaaaaagactgattttgcttgaaacactacgtt
tttgatgtaaaaaactaacaaagtactaagaaaaaatttttcacgtGTGT
TtgatttcgcgattttgtaattgGACACAATCAATAATATGAGACCAATT
TTGGCCTACTTGTGGACATTGATACCAtgtgttaaacttttatcaattat
ttgaaCATGTGAATATTGACAAATATTGTAGTGACCTACCTTGATAGGTT
TATACCTACCTTGATAGGTTTATGTTGAGCAAGGCAAAAGCCTCTTAGTT
GCAAGCTTGGCAGAGAGTGCAGACGTCTttcatgaagaagaagaaatagt
TGTAAGAACTGAACTTTACCTTGTCAATTATTTGTGTCACTCCCTGTTTG
TTGACCCCCAAGCAATTCGACTAAGTGGGTACTACAAATATCAGTGGATA
TGGTatcttcaaaaattgataaatcttTAACACTGTTGAGATCCTGTGTC
ACAATGATCAAATCAAGATAACTTATTAACACCTAAAGTGAtgacaaaaa
aatgataaaaaattaacaaggtctattttttggaaatgataaaaaatagt
ctaaaactttaatttgaccttgaaattgaaaatcctttggacATACCAAA
AAtgtgataattttttatcaaatttgacaGGTTTCAggctcaaaaacaat
gaaatgataattttttatcagattgaagttcaaaacttggtaatttttat
cataaatttgtTGGAAACTGCCAAAATTTGGGTCGTTTATTTTTaactct
ttgttttgatacaTATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTACATATCTCTTTAAACTATACGCAGAACTACAATTTCGAATAACTT
GaacaaaaatagataaaaacttAACCAAAACTAGTATGTACTTGTAAATA
TTACACTAATTAAGTTTAAGTagtgtgttaaaatattatcaaaattgaca
taaatcgttaaaaaatgaccaattgtttgcatattaacaaaatcttgagt
atcaatgGAGCGAAATCAGAACAAGATAGAATTCAAATGATAAAATGTTA
ACAGACAATAGAAGAgaagataatattttaacaatatACTTTCTGTTATT
ATAGTTTTATTAGTCTTTGCCACTTAAGGATActtaattaaaactttcaa
aatgctCAAGAAGCTGATCTGCAACCTAATTAAAAACACCCTAGAAACTA
GAATAAATCAAACACCAATattaacaaaaatactgataaaatattaacaa
aatactaaacAGAACTAACGTGAAACACTATAACAACGTTTTCTCCAAAT
CTAGAGTACttacaaattacaaattttCATATTCTATTATCCTGAAACGT
TGCATCCGCATATCTTATAAAATTCATTTCTGCAATTTAGTTTCACTAAT
TTAAAGTTTTGGAACCCTGATTTGAAACCCAAAAATTGCCCCAAATTGAC
TTAAAACttgatatcttatattttttcCTTGCTAAGATAAGttcaatttt
tgccaaaattgttaaaaatttatcaCTTTTGTGTCCAAAATGCATGCAAC
AATCGTTATTTCTATCTGATAAATTCACTTTCTCATTAAATCTAATTTAC
TAGATTCCAACAGCAGCAAACCATTTTCGTAATTTCCTGAGTGTACCAGT
GTTAcaaatttatcaatattttgttaacgctctgataaattttgtaaata
tttaatATATGGCTAAATTAAACATAgcaataaattatttttcattttgg
gggatttcagactttttagactttcattgaaTTGATAAGATGttaacaat
gttaattttttatcatatctttgtcaaaaatgaagtttttaattttttaa
atatttaaagaaCGTATTAATATCTAACTTCTGTTAAATTTTCGACCCAT
gacaattaaaattcagaaacttattaacaaaacaaatttttggacaattt
tatgATGTCCACAATGTTGTCTCATATTATTGATTGTCTCATATTATTGA
TCGtgtccaattttgaaaaatttaaacagtattaaattttgcgaaaattg
agcaaaaaactcgcgaaattaagtacccgcgaaaatttgtaacatgcgaa
aatatataccaataaggtatgcattgtcaaatttggttctccattgttcA
TACCAGTTCATACTGTCCTGTACTGTCAATTGTAAGGATCGATGGTGATG
TCACCTAAGAATAATACAGAAAAAATTTCGTCAATTTTATGCATATATAT
TGATTTgcaagatattctattcgccgcgcaAACGCCAGGCAGTCCAAGCC
TtgattttcctaggggttttggtTCATTTCTCAGATTTTCAGGGGGTTAT
Tagttaccgtgagattgggtaacttgcatcagtggaggctaacatgcata
gccctcaaatgaaagacttggctggtcattaaaatacaactacgcagcac
TGCTCGCAgttctactctaccatttttgttttgatttaattttgtatttt
aatgaccagccaggtctttcatttgagggctatgtctccactgatgcaag
ttacccaatctcaagGTATTACAGGTTTCCAGGTGGTTCTCTCCTCTAAA
CTGACATCAATACACAATAGTCATTTTCCAGGcccttttcacaaaatttc
aggggataatttccaggggataatttgttatccaaaatttccaggaggGG
GGTTGGtgagaaaattttgtgaatacccctgtacaatttttttttgaata
gccCATTGATggtaatttttcatcttcgttattttccaaatgaagcacaa
ccaaaAAACCCAAcccaatcgaatctcaattgaatatgaaaattgcattc
aattgcGTTTGGGGATGGTATTTGCAATTAATCATTGCATTCCATTTGgt
taaatttgttttgaaagtctGTTCCATTCGATTGATATGATCTGGAAAAA
TATCAGTTTACAGGGAAAGTTTTCTGCCTTTGAATATTGTTTATGAACAt
ggacaaaacattttttgacacCTGTATTTTtgtgagggaaaaagttctct
TTACAGCCAGATGAAGTATGTTTcacttttggtataaaaaaggtttgatt
ttttttcttcagattcaAGAAATGGAGGAGATGGATCATGATCACATGTG
AGTTCAAACAGTTCCTTTTTTTGAATTCATATCCTTCATTCATTCAGGCA
AATTTCCAGGAGTTGGAGCTGCTAccatttttaatcaaaagattgAGTTT
CAGAATGTGCCTTAGGCTTGAAAAAAGCAGACAGGAGGTCTAGGGCCTTG
TAAACAGCCCAATCAACTGGTCCAGGACAGTCCTGGTGTGGTCTATGGGG
CAAAGCCCCAAGAAAATGATGCCTTTTTGCGGAATTTTAAGTGCTATAAT
TAATATCAATACAATTTTGACTCAAATATCACAAAAGTTGGGATAGtcga
tttcaatttaatttttttttgccttagGATTGAAGCACTTGGTGATGATG
TAGAGAAAGTTCCACTCTGTCAAGAAACAGTCAACCCCAAAGAAAAATTG
GGACCGTCAGATTTTGACCTTTTGAAGGTACTTGGGAAAGGTGGATATGG
CAAGGTAATTATAATTGATGATTGTTGTAGAGTCAATTTCCTTACTCAGT
AGGGGATGCAGAATTAGAAATTATGCCCCTGACTATTTTCTATTTGTTTA
TGGTTTGCTTTTAGTCAAGAAGATTTAACATGtatttaaaactaaaattt
ttaattaagcATTGATGACTTATAAAAACAAGGGTTCTAttgcttttatt
ttattttatttttcaggtatTCCTAGTACGCAAAAGGACAGGTCGGGATG
CTGACAAAATATTTGCAATGAAAGTCTTGAAAAAAGCAACAATTGTTCGC
AATCAAAAAGACACTGCACACACCAAAGCTGAACGGAATATATTAGAAGC
AATTAAggtaattagtttttatctTGTACTGGTCAATGAAGCTTTAATTA
CCCAAATCATCTGAAATCTCTAGTAACTACTGTAAGGttataaaaacatg
ttttttaaaggtctttttttttccttcctcAGTTCCCTTTCATTGTTGAT
CTATTATACGCATTTCAAACTGGAAAGAAACTATATTTGATATTGGAGTA
TTTGCCAGGTAAGACGTTCTGGTACATTTGTTTAGTCTTGTATCTATCTT
ATCTtcgtaatttttttactttgagaAAGATAAACATTCCTGACATTTTT
CAGAAATTCCACACATAGCTGTCAAAGTGTTGACATTGCTGTCACAAGTC
AAATAAAACAGTCTTTCTCAGTATTTGagaagtgaaagaaaaaatcgtTA
AAACTGACAATTCTAAATTAGATTCTGTGATTTCAGCTAGATTTCCAGCT
CCAGTTAAAACTTGAATCAACTTTGtgtatttccaaaaaaataaatatta
aaatgaaaatattatgtTATCACTTAACACCCCTGCCAATTCTATAAATA
TACAGtacactctctctaattcgagcttTATAGGTAttataaattttctt
tgaattataaaaagatttgGATTACAGAATGTATATTACACCACTTTCCA
GTGGAGGGGACCATTATAGTGAGGttgtttagcataatttacggggaaaa
aataagatctagctgaaactttctccagactttctttataggatggttat
gcctcaggatcccctaaaatcccactgatggaacatcccttttttgggac
atttcttttttcccaaggcaaaaccctaagcagacattatcaagtatacc
atttgaaagctcttgaaaaactatatagaagacttttaaacgggtatagc
cgatttcattacctaactcaagataattcacacaagatgctatttatgca
gatttatggtcaattttagaccaaaatgtggcgaaaagtggaacttgcgg
gGTCatcagtgggattttaggggattttttcctgaggtataagcacaagc
atcctatagagaaggttaGGAGAAAGTTTtaactaccttattggaactaa
ttttcgcgggttttaattttagcgtttttcgcggtttttcatcaaaatcg
cgaaaatttgatcccgcgaaaaattttgagagttgaaaaccgcgaaaatt
aattcccgcgaaataaatttttgccaattttatcgaaaaatttgaaaaat
ccctgcgaaaatgaaagaaatttgtccaaaaaagggcaaaaccgcgaaaa
ttaaaacccgcgaaaattccagaatggaaaaaaccgcgaaaattagaacC
CGCGAAATGTAATTTTTCGGAtaatttttttcgaccgcgaaaattagttc
ccgcgaaaattagttccaataaggtagatcttatttttctcctacaaaca
gcctatatttttgtaacacaCCACACTATTAGCTTAGTttcaaattacag
aaatattcgaaaaatagaggtttgaattagagagagttgactgaaCTATG
TATAGATCTGTAGATATGTATAGATGGACAAAATTACTTCTTCTTATCTA
GGTGGTGAATTGTTCATGCATTTAGAGAGGGAAGGTGTTTTCTTAGAAGA
TACAGCCAGGTATATCTTAGTGATACTATTCCAATGAGAAAATATGACAT
GTGCACCGGCTCTTCAATTAGGTTTTTTACTTTAACTGGTCAGAACTATG
AAATCAAGCTTTAGTTATCAAAAAGGTTTTTGTATTCCCCTACTTTTGTA
CATCAAATCTTTAATGgggttgtgttttttttttctagataATTCATATG
TATGTatattaaatttaaaaagtattcCTTCTTTTCCTTTTCAGTTTTTA
CTTAGCAGAAATTACTTTGGCATTGGAGCATTTACATAGTGAAGGCATTA
TTTATAGGTAATTCCAAGAACActatatttttctttatcaaattatTACA
AATTTGAGATCAAACAAATATGTGATTACCTGTCttcttttatttgactt
tttctcaACTCTCTTTTCAGGGATTTAAAACCAGAGAATATTTTATTGGA
CCTCAAAGGTCACATCAAACTTACTGATTTTGGTCTGTGTAAAGAATCCA
TTTTCCATGCAGACAGAACGCACACCTTTTGTGGAACCATTGAGTATATG
TAAGAACCGGATTAACTTAAATTTTTAGATTGATTGACTTTTCTTTGACA
CTTCTCGGCTAAAGTGATCTCTTTGGTTTTAATTAGAATAATTGCTTATG
AAATGGATGGAAAGTTTATGAATAAGAATGACATGTAagcaaaattatta
aaaaagatgCTATagtatgaaaaattaaattttagagTTAGTGTTTTCCC
CAAAAAGGGGATTTTTTAGCGCAATTTtctgcaattttagcgattttaag
tctaGGTCCGGTAACAGgacttttaaaaaacaaaagtcgtctggttttaa
aaaaaaattaaaaatttttggttcttttttatcaaaatagggCACCTGAA
GTCTTGACACGTAGTGGACATGGCAAAGCTGTGGATTGGTGGAGCTTGGG
AACCCTCATGTTTGATATGTTAACAGGAGCAGTAAGTGTACATCTTTGAA
TACTTTGAATGACTGTTTGAAGTTTTTTGccatatttttctatttttttt
gcctaggttttttttattaaacCATTATTGTCACATTAACTTGTAATCAC
CATATTCTTTGCCAATACTAGGATATCAAAGTGATATACTCTGCAGAACA
AATTACAAAATATTACAAACGGGTTTTGCTTATTTACGATAATAATATTA
CACTACGTCGCTGTAATTGACAACTGAATATTCGTCActaccaaaattag
ttcttgtaATATCAGCTCTTACAGTTTCCATATACATACATGTaactgaa
atatattttttttcagcctccattttgttcagaaaatcgaaaaaagaccc
aggaaaaggtactgTTAAACTCGTGAAAAACATTCTTACACTACCTGATT
GCGAATTCCTCTATGATCTTTCATATCCTTCAGTTTGAGCTTTTTTGATT
GGATAATGTTGAGTCTAAGTTtgatcagggggggggtcggtagtaaaatc
tcagacataatgacatttactacggtggtggtgtgatgaaaaatcgaaaa
aaaaatttactcccCAGGGtttttaaatactaaaatgggtggtatctatg
tgttaaatattgaaaagattttactacctgggtagttaaaactggtaaaa
ttagcaaattttagctatttttgtaattcttttaattttttgggtgactt
ttctgaaaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NAAAATTAGTTCTTGTAATATCAGCTCTTACAGTTTCCATATACATACAT
GTaactgaaatatattttttttcagcctccattttgttcagaaaatcgaa
aaaagacccaggaaaaggta

Gene-mRNA-Prot

The following transcript feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
TCONS_00048333	TCONS_00048333	Clytia hemisphaerica	transcript
TCONS_00048334	TCONS_00048334	Clytia hemisphaerica	transcript

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
TCONS_00048334-protein	TCONS_00048334-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_142	supercontig	scaffold_142:971161..985080 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.65	11.97	8.38	6.57	71.88	56.35	48.04	53.07	33.58	41.73	36.97	22.76	32.04	27.58	23.27	27.43	44.49	46.12	24.76	39.75	45.32	49.3	41.74	44.83	52.17	55.42	62.48	48.72	65.41	67.78

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XLOC_030759 (gene) - C. hemisphaerica