XLOC_030916 (gene) - C. hemisphaerica

Overview
NameXLOC_030916
Unique NameXLOC_030916
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_145:215844..226376+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030916 ID=XLOC_030916|Name=XLOC_030916|organism=Clytia hemisphaerica|type=gene|length=10533bp|location=Sequence derived from alignment at scaffold_145:215844..226376+ (Clytia hemisphaerica)
CCGCAcgtaaacaaaataaaacgttcGAAATTTCGAATGCCGCTGATTTT
CTAGAGAATAATTAAAAATGGTGCTTGGTAGTTCAATACAATTTATGTAA
TATAGAgagtgtaaattttttttggatattATAGAAAATATTGGTGAATT
TATTAGCAGAAAAATTCTTAATAAAATGGCTTATTATCATAATCGACCGA
ATTAACCTATAATAACATTAGCATTGAATTTAACAcgtaaaatcaaactt
tgaatcGAACtttaaaacgtcaaaacaaTGAAATCAACGTTGCTATTGTT
CAAAGCGATCATCTTGTACACACAATATTATCTCAGTTTTGCGATCCTTC
ATCCCGACGGTTATGATTATGAGGAATGCAGTCCAGATAAAAAGAAATGC
GAATTCTGGCTAGTTGTCCAAGAACATTTAACAATGATTTACGAGAAGAA
CTTGGTATATGCTCATAAAGGCAATCTCTATCTTTACAATGAACATCATT
CGAATTTCACAACACACGTAAGTCTGTTATGGCGCCCAAGCATtaaattt
aaccctttaagttgCTACGCGgacctgaatgatagaaaggtgcccagtag
taaaacttcaaactaattcgctgaagacagaatcaagtaaagcagggcca
aatttggaggttcttggatcacttgTTGACCAAAAATTcgaaacggtcaa
aatcttaaaaaagtggatttttgtcaaatttttgcatttttttgactttt
aggcttaaaatctcgctggaaagactaacttttgatttctttcttgCTTG
ATCATGAAACCgacaattcctacgagttagaccaaaaatgacgatttcta
actcaaactgggcattacaggagggcttcgccctcctacataacCCATAC
TCGTCATTGGTagttaaggtgggagtcacatgaaaaattgagaaagttga
ttttttacattttcctgtataacttttgaacttgaagagatttttaaatg
aaattttctacagAGGTAACTTAACAATagatgatttcaaaaatgtaaaa
aaagtctaaaaatagccaagacgggggtaaaatcagcCAGGGGGGTAATG
TACTGTGAAAATATTGTGTcaacgttttagaaaaatctacaaaacctatc
acaaaaattttttttgcagcttGTTAATATTTGGTTAAGGAGTGTTatga
atggaattttttttgagatttcattccagggggtctggaaactaaaaaat
gcattttttgaatttagaaatcaaaaaagtattttttcaaaaatgtaatc
cATTCATAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNcctgaaaatttcaagttcatagcacttgtc
aatcctgagaaaacgttgccaaggtgtgcgaaaaccccctgaaacctatt
ttgagaaaacggTCCGTAAAGTCTGAAAGTCAGAAGTAGATATATATCTC
TATTTCTCTGTAATAAAtcgaccgttttacaaaattcttttgcTGTTTGA
CTAAAATGGACTATAGTTCTACTTTATATACTTTGAAAAAggctttgaaa
tatcaaaatagtccagaaattccaaattatcaCTTTCACATGATGTGCgc
caatccttaaaattttgcgccaaactccacgtcaacattgatttaagtca
atttaaatgtgttttcacaacaaaaaccatattttcaatgtaatagaTCA
TCCTGGTATATTTTCCTCACTGATTCTGCCAGTTATAGGTTAATCTAAAG
TTCATCTGTTGTGATACAAGAATCCACTTCATGGACATCTAGCTGTGCAC
GATTTCTTCATCGTGAATGTACATATAATTCAGCCAGAGGGCGGAGGGAG
CGTCCCAGACCTTCAATAATTCATCACACACAATTGTTAAACCAGCCTCC
AGGCTTTCAATTCCTTTAACACTTGGATctttaaatagatacatcattga
atatgCCTTTGGTCTTCGTCCTTCAATAAGTTTTTCAGTGTCGTCAAACA
GTCAAACTAAGTTCATATCGGAAACGTTGAGTTTGAGAATCAAGTCTTTT
GGTTTCACCTAGCTCAAGCTTTCTTAGTTGAGAAGAATGACATTAAAGAG
CTAAAAATGTCATCAGtcaatccaacatttccaaaTTAAAGCAGTTTTCA
TAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTAAAGGGTTAAGAAAGAAACCTTCAGCCTT
TCTCAAGCAAAACAAATGTAGTCTTAAGATTTGCACTCCCTTTAAACTGA
CGGTTTGAATCTAGCCCTTTCGTTGTTTTTAAGCGGCATACTTTTTGAAA
TCTGGCGAtgggttttactttcaatctggcgtttgtgtgaaaaccatgcG
GGTCACCGTTTTGGATTGGAAATGAGTGGCTCCATTCCCCATCCAATTTA
TCCTCCTCGCGGCAATCTTCCTCGCTGCCAAGGGCACTGAGTTTGGAAGC
CAGTAAATAAGTTGACTCTTTTAGACCACGCCTCTACAGTGGTTGAAACT
CGGTAAAATGTCCATATGTTCAAAATGTAATGAAGGATAAACAAATGTCT
TGTTAGGTGCCAGCTGATCAGGTTATTACCGTCGATGGAGTTAACAGAAT
GGTTAAAGTTGTCAACGGGTCGCTACCTGGCCCACCCCTAGTGGTATACG
AGGGCCAGATGGTAACCGTCCATATCTCCAACATGATGTTGAGTGACTCC
ACCACCATCCACTTCCATGGTCTCCATCAGAAGGCTACCCCTTACTTCGA
TGGTATGCCGTATATAACACAATGCCCGGTTGCAGCAGGGCAAACATTTA
CACACGAGTTCAAGGTATATACTTTTATctactagccataattttcattt
aaGTGCCAACGCAACAGAATGATCTAATAAAGATCTGATAGCCTACGTAA
CTTCTGTTAGAATGATATCtaatctgagacaaaattcactccctgcggtg
gcaaaaatgattttgtgaACTTGACGTGTAAAACACGTGGGACCAGTGGA
AGATTTGGCAAAAGTTCCGTCCCCACGGAAAAAATTCTCCACAACTTCAG
CCTCACTGGGGACCCTTTTTATctcaatacacccctgtgtcacagacccg
ctgggactctagccccactggaaaatctgacaaagatttcgtccccggta
ggaaaataccctggaattttagccctactgggaaattgacttatatttca
tccccactcgaaattaaatgtttaaaaattgcactccaaaactatcccta
ctgagattttttaaccttagaacaacagaatttctatccctattgggatt
tcaataggaatttttatccccactgaggaaaagagtttcaccggggctgt
aagACAGGGGTGTCCCCATATGGCTTTACAAGGGAGAGAGGGGCGTCATA
ATCTGAACTTCTATTTTGATTTTAGGCTGAACCTGTTGGTACATTCTGGT
ATCATAGTCATGTTGGATCACAAAGGAGTAATGGTGTGTTTGGACCGTTC
ATTGTTAAAGAGAGACATCCACCTGGTACCAAATTACCAACTGATATGAT
TATGTCTGTTGGAGACTGGCATCATGAAAATTCTGACGAAGTGAGTCTTT
TGATAgtacccagccggcacacaacgtcaaaacaacgtccatttgacatt
cataacgtccaaataacgttattcgAACGTTAacacaacgttgtgtgcca
gctgggtataaTCATCAAATCAGAACTTACTACTTGGAGTTTTAAGTGTG
tcgtcaaaaaacctttttaattttactaattcaactttttcaggCTTAGC
TAACATTATATTACATTTTTCAGAATTAGTTTGATTCAGAATTGCAATTT
TAGCAAATCAActttatttcgattttggagcgATTTAATGACTTATTCAT
TAAAGGCAATAACCACTGGGTTAATCATGTTTTATACTAGAAATTAAATT
CAAagaaacaacaaatttttattttattcaagcaatttttaagcaatttt
ttgcctaaataaaataaaaatttgttgttttgaacCAAACTTACGCTAGA
AATGTTTCTTTTCGTTACAAGGTTTACATCAAAATGATATACGGCAATTA
CATTGGACGAAATAAATACGAGGTCACACACACCCTGGATGGTGGAAACT
TTTCCGCTGTGCCCTGGGTTTCCGGACTGATCAACGGGAAGGGAAGATAC
ATCGATAAAATGACAGGTTAACCAAAAAAACGTGtttctttttaactttc
ttCTAAAGGAAAGCCACTTCTTGGCCAGAATACCTTTATGATTTCAGCAA
TGAAGCGAATTCTCTTGTGTTCAAAGTCTTTGTATTTTATCAAGTTGAAA
ATCAGGGCCCTGAAATGGTTTCCATATGATAGCAAACGTGTGCCCACTTA
AAAGCAAACGGACCTTACAATTTCTTTGGCCATTTTGATCATCATGTTGT
GTAAAATCTAATGATGCTGatgaacacccctgtctcacagccccgctgga
acttttttcttcagtggggataaacatTCCTATCAAATTCCctatgggga
tagaaattctattgttccaaggttaaaaagtccagtggggatagttttat
tttggatttttggataaacattgaatttccaatggaaatgaaatcaaagt
cattttcccagttgggctgaaattccagggtaatttcccaccggggacga
aatttttgctaaattttccagtggggctggggtcccagtgggtctgtgac
acaggggtgttgaTGAATtcacgaaagatgacgaaaatttctaCATAACA
TAAGCAGTCTTTTAATTTTCTGTTCTATAAATTTGCTGCTTTTATATTTT
ACGTTTTCACTTGTGTAAAATTGATACTTACCACAATTAGAATCTTTACT
ATAATAAAACTATGTTGCAAATGCCGTTAATTCTTTCAACTTAGGTAAAA
AAATCATGGCTCCACTATCCTGGTTTAACGTCACCCGTGGCAACCAATAT
CGGTTCCGTACAATTGGTACAGGTTCTTTGTATCCACTACGAATCTCCGT
TGACGACCATAATTTGACGGTTATCGCATCAGACGGGTATGATATTGAAC
CAATGGTGGTTGAGTCATTCATTATCAACCCTGGTGAAAGATATGATTTT
TTGCTGGATGCTAATCAACCATATAAAAATTATTGGATTAGAGCTGTCAG
TATGGAGGTATAAGAATTCGTTTTGCCCTGCTTCTCTAGAACTAGAAATC
TGGAccttttcttgctccgaaaggttccgaaaccaatatgaacacactcg
atccgtaacgaaaatcgtaccggagcgaaacggaacagtaacgtatGAAC
ATAGTCTCAGtttcgatgaaaaaagtggagcgaaaccgtttcgatctgtt
tttcttcgtaacgtcttctttttgacgtttcgaatgttgacgttcacact
tgtttcggaaccgtttcgtttcgtttgAACGTAAAAaataacgtctgaac
atggtcttagatgTCCCCTAAAGCGATTTGCATTAATTCTTTTCTGATAT
TTTAGTACTGGAGTTGTTATCTTTCGCAAGCAGAGTTAGGAAAAGTAAAG
CTGAGTGATTTGGTGTTTTTCTTTGCTCTTTATTGATCtttgttgattta
ttcaaatGATTTAGATCTAGgtgaaaaaacaaagtttataTCTAACGTAA
TCAATTCTCCATCCTACTGGATACTGTAGTATAAAGTCATTAAATACTCA
CTaaatattttcgttttttagGCTGATGTAACAGATCACGAAATCCAGGC
TATTTTACATTACTCTGGTGCCATGGATACTGAGCCCCAAACAGAACGGA
CAAGCTGCACTTCGGACTTCAAATGCCTCGTCTTGAATTGTCCATTCGAT
CGATACCCTTCACGTGATAACATCAAATGTATCAAAATGTCAGAAATGAG
GGCGGCAGGGCGTAAAGACCCACCTCCACCCTTTACAAACGACTCGCAAG
agcactttttaaattttgctttcCCTGGTGAAGGAATCGAGAAATTCATA
CCGGGGGCGGTTAACGGACGTAAATTTATGTATCCGGGCGTTAATTCATT
ATTCCAGAAAGACGGAATTACAGCGGAATATGATTGCGCTAAAAATGACT
GCGGCGAAGATAAAGTTTGTCATTGCCATTATGAGCTAACAGTACCATAT
AACAAAACTGTAAATTTGATTTGGTCTAATGTTGGGTCAGGGTCCGGCTG
GGCACACCCTATTCATTTACACGGACATTCATTTTATTTATTGAAAATGG
GTTACCCCAAACAAGACCCCGATACTGGTTTACTAAAAGGTGAGTGTTTT
TCTTGAATAAACTTTTTCATTCTTTAATCAGCAAAACAAGAACTATtcca
caaaatattttcaataaaagagCGATTGGTCTGGATAGCTAAGTCTTGCT
TCATGAGGTTAACACCGACTTAAAAGATGGCCTAAAATCTTCTCTAGTGT
TGTTTTTAGATCTTTATATACTACCTATTAAAAGCTTTTACGTTAGAGGA
TAAATAGAGCTTAATTGTAATGATTTACTTAGCGGGGAATCTCATTAAAA
TTTGCCATGATATAGAAATACGTTTTGGTCTTCAAATTTACAACAGATGT
AAGTTTTCAATAGTTCCCCATTATGAATTTTACTATATTTTGGAACCTCC
AGGTCGAACTCCAGACATTGATTGCGGAGATTCGAAACTTCAATATTGTA
ATGAAGCCAAATGGTCGAACAGATCATGGGCCAATGGTAACGCACCCGGT
GTTAATCTTGTGAACCCGATTCGGAAAGACACAATTATTATCCCGTCTGG
TGGATATGCTGTAAGTAAAGATCTAAAATTTTGGCTATTTCGGCTGCCGT
AATTTTAACTAagaatttaatttaaatttggTAAACTAAAAAGTAACATC
CTTCCGAGGAGCTTGTTTTGAAGATTTCAACAAAGCTGAGATAATTGGAT
TCGATATTAGTGTTACTCAGAAAGGAAACAAGTGCAGTTTCTGCCCAGTT
TCTAAATATAAAGCTACCGTTTACGCTCTCTAAtccgatcttcaagggga
attagattttcatcgaataagggaacttatcaaataagggagcgtttttt
atgagagtttcttgctgacggggactttaaatttcatcgaataagggagc
ctaccgaatagtagaacgtcgaatcagagagcatcaactgtagtTAAAAG
ATTAGTATACAGTCTAAATCTCCAACCTTTCTTTTTAGATTATCCGACTA
GCAACTACAAATCCTGGCAAATGGTTTTTACATTGTCACATTGAAGTTCA
TGCTTTAGAAGGAATGGCCATGGTCCTCAATGAAGCACCTGATCAAAAAA
TAGAGAATCCACCTGGCTTTCCGACTTGTAATAATTTCTACAACGATCGC
AGTCGGGATATGCAATTCATTGGAGATGAACAATGTAAGTTGGCAATAAG
Aagttaacctttaccacgccgaagccgtaaatttacgttctaatatatag
ccgaagccgtaaatatacgtttttcatggggtgttaagaaaagccgccct
accACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcaaaagttatgac
ggaaagcgtaaaactgtcatttttcccaaaacgacaaggcgtgcacgggg
tgaagttcccagagagaaggcgtggtaaaggttaaggcTGAAATTCTCTC
GTTTTCTTAAACCATCCCTTTGATATTAAGCCAAGTTCAATTGAACTGGG
TTTTTTTATGGGTGTGCTTTACCAAAAAGCTCTGATCAAAGATATGGTAG
ATGGTATTTTCTTCAGTGGGCACTCAGTGTTATTTTAACCTTTCCACCGT
ATCTAGCTTATCCAGAGGCTTATTAGATCGGAGAAAAACTGAtcattaaa
aagaaattgatgCTAATTTTAAGCTCTAAAATATATTAAGCGTGTTAACC
CTTTATGTGCCCATATCGAGTATATTGGACATGGGGGGCTGTATAGGGTA
GAGGGGCGAAGCCTTCCTGTAATGCCCAGATTGAGTCTTTCCAAGTGAGT
CTTCCCAGCGAAATTTGGAGccgaaaagtaaaaaaaaaattctgtcctct
agcgaattgatttgaagttttaccacagGGCACCTTTCCGTCATTCATTC
AGGTCTGCGTAGCGTAGATGATGTTGCAAGATTATTGtaaaaagtttatt
acaaatctaTCTTTGATTTATTATCTCTTCAGGTCAAAAAGCAGAATCAA
TGAAGCGCCAAATTCACAATAAAGATGCCATCAATCTGATCATAACATCA
ACATTAGGTGCAATAGTTACAATACAGTTTATCGTAATGCTGTATTGCAT
ATTACGTAATAAAAAGGTTCGACAANCAATACAGTTTATCGTAATGTTGT
ATTGCATATTACGTAATAAAAAGGTTCgacaaaacattgaaaataaactt
AACCCAGAGACTAAGAAGAAAAATACTAAAGCGAAAGATTGACATAAACT
TTGCTGAAAAGCATAACCTTTGACGGAATATTTACAACCAATGGTGAAAT
GTGATAAACCCATCGATGCTAATATAAACGCTTTATTGACGGAGGTGAAT
TTATAGATTATtgcaagaattgaaaaatcaaatttgttctCGTATGTGAC
AATTATAAACttcaatttcaagatttttagctGAAGCGGTATGGAATTGG
AAAAGAGTTTGGATGGATGGCAATAAGGGAAACCGAATTTTATCTGATGT
GTGAAGTTGTTGTTAGGGGTGTTGTAGTTCTTTTAACTACCTTTACCCAT
TGAGGATTTTAATTTAGTTTACTTAAGTTTCTGTATCCAGCCTACTGAAC
TTATGGAATTTctgattaaaattttaaataagtAAGATTGAAAAGACATG
GAGATAGAAAGAGATTTAATTAAGGATTAAgaggattttattttttaggg
aAACGGAATTTTATCTTCGATGAGCTGGAATGTACTCATGCCATATGCAA
GAAAAGACTTTATTTCCGAATATACttttaattttgtaaatatacAATTT
CGTAATGAAAATAGTAGATCTTTTACAAGTGCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00048632TCONS_00048632Clytia hemisphaericatranscript
TCONS_00048633TCONS_00048633Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00048633-proteinTCONS_00048633-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:215844..226376 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.06	0.02	0.07	0.08	4.31	3.83	19.93	21.48	2.23	1.88	11.71	7.61	7.09	5.71	4.33	12.52	10.51	10.27	0.27	0.1	6.56	7.93	3.07	3.49	10.07	11.54	0.86	0.17	0.14	0.03