XLOC_031658 (gene) - C. hemisphaerica

Overview
NameXLOC_031658
Unique NameXLOC_031658
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_167:1270071..1275264+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031658 ID=XLOC_031658|Name=XLOC_031658|organism=Clytia hemisphaerica|type=gene|length=5194bp|location=Sequence derived from alignment at scaffold_167:1270071..1275264+ (Clytia hemisphaerica)
aaaaaaattagtgttataaaagaaagttgatattataaaaagaagttatt attaaaaagccttttggcgcgccataaatttcatcataaatattcttata aagtacatttttataaaaaagcgtgtatataaaGCCATGTGTCCACTCCG GATAATTTTCAACGGATCGGTACGGTTCGGAACGGTTTCTATTGTTCTGG GGATTATCTTCAACCCATTTGCTTCATATTTGTTTNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTGGTCCA AACGGATAGAaaaaaagttggattttttcaactttttttgcgaTCCGTGC CGGATCGAAACGGTTCTATTGATTTCAAACAATAGAACATCTGTATAGAA GATTACActaattaaattttctttgtataaatattgtaaacagaaagaat CTGGTTCAGAAAGTTTGAAGTGGATATTGCAAAACGGTCCGGATCGGTTT TCCAAAATATTCCGATCCAAACCGATCCGTTGAAAATTATCCGGAGTGGA CACAAGGCTTAATAGAGCTGATTATCTTTGATAATTACTGTATTTCTTTA ATTGGTCGAtcagaaaatttaacaaaaaagacaaaacagCAAAGAGACCC CCACAAAATATTTGACcgatcaaatttttcagattttttgcctATTGTTA AGCAAGGGATTTCTCATGAATGAAAATAGCTCATTGAATTTAAGCTCTCT GGTTCAAATCGTTCAAAATAGAAGGCCcgttttctttcttctttcttctt ccttttcttttcaCATTCAAATGACGTTCTTTCATTGACACGTGTCGAAA GTTTAGAAAAGATGAgtataaaaataaattctctCACAAAATTCATTGGT ACGTATaagaatatttgaatattttttgaggtTTGAGGGGCTGATGATTG ATCGGtgaaattaaaatattcttataataaagACTCGAATGTGCAAAAAT ATGCTTTTTATTTAGTAGAGTGTGCAAAGTGAGTGAGTCTTTTAAACAAA AGGCTTTTGTTTGTAAttcgttttaaattttttgtaagCATGCAACGTTA ATTTTCTTAAACTACGGttcattttacaagcaaaatcTTTCAAGGAAAGA TTTTACAGAAACTTTCAACTTTTAACcaataaaattaaaatgtcATCGGG ACTTATCCAATTTTCATTAAAACGTTGATAGGAGATCGATTTCAGACATa ttaaatcaaatttaattcCAACTCACTTTTCTTATAATTAAAGAGAGTAA TATTTATAATTAAACTCTCACGGAAAGCTATCATGCTTAAAGTGTGATTG TTCTACTTTAGGCAATAGATGGATGTTAATTGTACGTCTCAGTGCGCAAG CGTGTTGAAAGTTTGCAGAAAAAACTTTGCCAACTTGTTTTCTGTATGTT TACCTGCCAAACAAAACAGGTCGAAAATAAACCGTCTTTTATTAAATCTA GCCAATCAGATTAAAGAATCTTCTATAAGAAAAGGAAATAAGCCAATCAG ATGGCAGCTGCGTGAATAAAAAAAGCGGGAATATTTTCGATTGAGCAAAA GACTTATGAAGAAATTGTGATTCAAAGAAGAACGAGATAGAAAGAGCAAA GAGTAAAGagttaaaaaatcaaagattaaatattttttttctgttcaGCT ATGGAGTATAAGAGGCAGAGAACTATGGCTACTCGGATTCTTGAACCAAA TGGCATAACAACtataaaacaagaaaaattataCGAAAAAGGTTTGTggg gtgaaaaaaaaattttgataaattattcAAATAATACTTGATCACTTTGA TAAatattgatatatttttttctttgatgtaTTATTTATTTATGCCGCCC CTTTCAAAGTCTTTAAAGATGTTTGTTTGCTCAAGCCTCTTTAAAGTTTT AAACCCAGAACCAAAAAAGCTTTTAACGAACAACTTTCCATCTTTTGATG CACAGGTTTAAGCAAGAAGCCAGTTCATTTTTTAGATAGTTCCATAACAA ATCATTTTCTGAAAGCATaataaaattctttctttttacaGAAATACTAA CCGACAAGAAACCTCTCTCGTTATGCCGAGTTTGCGGCGACAAATCGTCG GGCAAACATTATGGCGTCTATACGTGCGACGGTTGTCGTGGTTTTTTCAA ACGTGCCGTACGACGAAATTTGGACTTCCGTTGCAAAGAGAAAGGACAGT GTCAGGTTGATGTGGCAAGACGGAATCAGTGTCAAGCATGCAGGTGGAAG AAATGTTTAGAAGTCAAAATGAACAGAGATGGTAAGAtgtctttcaaaaa aattattaaattcttaacattttagccaccgaagccttatattcttatat agtttgttcttataaaaaaacgtgtatgaagTCTTTGAGCTCCTGGGATG TTCTCCAGatgttttaaaattgttcttaattttgtcattttcaattttct ggGTATACAGTATTTTTATGCAATTTCCCAAGGAATTGGGTACGTTTTAG AATCCACGTACTTAATATGTTTAaaactttttcttaatattctggcttgt cttatgttcttataaaaaacgtgtaatatatGACACTTTTGTTATACCCG GGCGATATCTCATCCTCTAAACACGAAGATTTCTTGAACGTcgacgtgtt tttttttttgttaggaCAATATTactgcttcttttgaaaacacagtttaa atacacatttttttaaaagaaaaaactatgtaagaacataaggcttccaa AGGcctcaaaaactttggatgttcttataaaaaaaacacgtgtACAACAT CCAGCTTCAGATTGTACTAAGATTGTAATTAAAAACAGGGCAGAAtatat ttcaaagttttaatcCCAAATGATGAATaagaatgaaattttgtttggtG GTAGCTtttcagaaataaaaattaacGTAAATCTTTTCATTTCAGCTGTT CAACACGAACGCCCGCCACGCACCGCCCATACTCAAATCAACACatccaa caacaacaataacTTGAGTCCAACTATGACTCCCCATACAGGTGATACCA CCAATCTTCATCACAACATTATGGGAGCATATCCAGACCCAAGTTTTATG GCTAACACGGGCGGTCAAAATAATAACGCCCATCAAAGAAACAACAACAA TTTCAATAGTTATAATAATAATCAGAATCAACAATTCCACCCTAACATGT ATCCACCCTCACACCCTAGCAATTTCTCACCACCTTATACTCCAGACGAT GAAAACCCAGACCGGAAAAATGGATTCTTAAACATTACGTCACTAATGCA AAACAATAGCAATAACAATAGCACAGATTTGATTGACACTCTTCACAATA TGCCAGATGATGGTCTGGATAATATCAACCATGAATCATTGATTCCAAAC ATCAACGAATTTCCAACACAAAGTATTGTAAATCCTGAAAAAATCTACGA GTCTTCAGTCCGTATTTTATACGCATCAGTCAGCTGGGCAAGAAGTATTC CAACTTTTATAGAACTCCCTTTTACAGACCAAGCTTTATTATTAGAAGAA TGTTGGAGTGAACTATTTATTCTTTGTATGATTCAATGCTCCGTACCAAT GGATCTCAGCGTTCTTCTTTCCGCCGCGGGTGCACACGCGGAAAAGGAGA CATCTTCAAACGTACCAGGAAGTGTTCAGGACTTAGGTACGCTACAACAC ATTGTGCAACGATTCCAGAATCTGGCAATCGACGCAACAGAATTTGCATG TCTCAAAGCTACAGTTCTTTTCAAACCTGGTAAGCTATTTGACAACACTT TCATTTCGAACTCCAAAATAATCCCTTCCTGATAACAGATGTGTAGTTTT CTTACGCGGCACGCTGAAAGCTCTGAAGATTGCTGAAAGCTAACCGTATA TTTTATCCCAcgcctttagagcttcagcttCATGCACAATTTTTACCTGG CTGAATTCTTTAACCCCTAGTACGGACCCATACTTGTTTCGTGTCTTGAA GCCCATCCAATTTTTATCCTTCAATTTTTAAAGGTCTTACAATTATTCTT CAAGCATAACAAAGATCAAGGCTATGTTGTCCATAACGAGAGCAATAATA TAGAGAAAAATGATGACAAAATTGCTTTTTCTCCAACCGAGCGCCTAAGT CTGATCTACACGTTCATTTTAgaccaaattcaactttttttttttttttt ttttttttttttttttggaNNNNNNNNNNNNNNNNNAAGACATTACTGTC TTTTCACCTAACCCCTTGAAgcgaagtttgtttatttacagACTAAGTAg tgaaaaaaagtataaatgtaATATAGtttatataataataaagaGAGAAA GAAGTAGAAGATAAAATTATTAACAAAGAGACACTTATTAGATGGCCCCA TTTACACCAACCTATATTTGCTTCAACTTTCGTTTAAGATCTTCCCGGGA TACGTAACACACAATACGTTGAACATTTACAAGACTACGCGCAAAGCATG TTGGGTGAATATGTACGAACTGCTCATCCCAACAATCCTGCACGGTTTGG AAAATTGTTGTTGCTGTTGCCATCGTTACGCTCCGTTACACCCAAATCGA TTGAGAACTTGTTTTTCCGTAGTGGTATTGATCAACTCCCTATCTATAAA ATGCTGTGCAACATGTTCAAAGCGAATTGaattaaaatcaaatgttttga aGTTGAAATGAATCAGTTGGATTTATGCCGTGAAAGAGCTTTACATCCAA CTCTGTCTTACAGCAAAGAATATGCTGAATTCGAGAATTTCAAACGTAAT GAGAAATTCTCACTCCGAGGGGACAAATAAAAAGCAAAATCTAGCaaatt tttctatcttttttttttaaacaattagatcatttttcattcttttataA ACTCATATAAAtccgaatttttttttacgGACAGTCATTTTTCGTTGTCT TTTTTTCATGTAAATATCTTTTCTATATTTCACAAAACTGATAGAGCATT TTTATCGTAATTGATTTTAAAGTATAATACAGGTCTaaatttat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00049956TCONS_00049956Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
Nuclear receptorTCONS_00049956-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1270071..1275264 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.4 0.41 0.2 0.07 22.32 18.32 24 27.59 14.43 10.32 15.07 11.92 10.4 9.51 10 23.11 15.55 14.68 0.42 0.15 10.47 9.43 4.88 5.59 5.19 7.8 1.75 0.29 0.17 0.07