XLOC_031863 (gene) - C. hemisphaerica

Overview
NameXLOC_031863
Unique NameXLOC_031863
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_169:461906..467399+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031863 ID=XLOC_031863|Name=XLOC_031863|organism=Clytia hemisphaerica|type=gene|length=5494bp|location=Sequence derived from alignment at scaffold_169:461906..467399+ (Clytia hemisphaerica)
AACAGGCTAgtattttaattcaaaaaaccttttaatcTATTTTACATGCA
TGTCTCTCGCCCTTTGTCTTTTATTCTAtaggttgaaataaaaaaataag
aaatgaaaattatagACAAAGTCAGTacataaaataataaataattactC
AATTTCTGATGGTATGGATGGTGGAAAAAATTGGGAATGGCTAACAGAGA
ATTCCTTCAGAAAATTGACCAATTCACTTCAGAAGACTTTTGTGCTGAGT
CTATAAACTGTCTTCAATCTCtcaaaaatgaatcaaaaactGATGTCAAA
TGTCGTATGGAATTGTTTGTTATGTACCTTCAAGAGAAATTGGTCAGTGC
CTTACAATCATACGAACCAACAAGATGCTTTTGTATTGACCGCTGGTTGA
AGGATGACACTGGTGGTGGAATTAGTTGCGTTTTACAAGACGGTAAAGTC
TTTTACAGTTTTTTATCTCTGTcattacttgacctcgggcaatatttctc
agtacagccctcactaaccggtcaaaTCGAGTNCCAGAGTTTACTCTCAG
AATTACTCTGTATAGCACAACTGTGGTGTGTGTGATTATACAAATATTTT
ATTGATGTTGTTCTTGCAAATGAGAAGAGGTCCTCCACATAGTATGTTTG
CAAAACTTTTTCGGATATAGCCTTTTCTAATTCAGAACACTGGCGTTGGG
CAAAAATTCTGGGTTCTATAGTACAGTGAGCACTTTTACGTCGGCAAAAG
CCAAATTTACGTCAGAATTAGAACGGCTGAGNTAAAAGTTTCAAGGATGA
AAAAATCTAGGGAGAGCAAGTCAAGTGTATTTTTGCTCCTCATTAAATAG
AATTCATAGAATTGAATCTTCCGCTCTGACATTGATcatactttcttttt
ttctccatctaggagatgtttttgaaaaagctgGTGTTAATATATCTATT
TTGAGTGCCAATTTGCAAGAAAATCATCGGAAAATCTTTGAAAGCAGAGG
GAGTATGGTAAAATCTGATCAAACAAAATTCTCAGCGAGAGGTTCGattg
ttatcatttttaaagTTGTCCCGTAATTTACACTTtacttcttcatcttt
attATTCCACacgctgactcagcaaaaaaatgATTAATTTCAATACGATT
TGGATTGAGTTAAAGGACATACCATTTGCTCACTTACTTTGCTTAGACAC
ATtcttaacaaaggaaaaaacaattttctctTCTTGCTGCGCCACACGAT
CACTAATTTTGAGAAATGTTATTGTTAACTATGCTTTGtcagtattcatg
atatgcaccattacaatgtcttctaggggatccaacagctgattgtttga
aagtgacgtattgactgactTTACGTCACCTACAACCAATCATCTATTGG
ATCCGTGATGTAATTTCAGAatacattgcaatggtgcatatcataaaaaG
AGCAGACAGGGTCACCTTTTTCTATGTcataaatctttaaattttaaccT
TCATTGCAAGATAATCTCTTCGTTGTGTTTTATCTAATTTAGGTGTCAGC
TGCATAATTCACCCAAAGAATCCTTTTGTTCCATCAATGCATTTTAACTT
CAGATACTTCGAGACATCAAACAATGAAGATGAAATTGGCCATTTTTGGT
TTGGCGGTGGAATTGATATGACACCAACCTATTTGGATCAGCAGGTTGTT
ATGCAGCCAAATACAAataattatatatatatatttaattctttttttta
ttcaattggagTAAAATATGAAGCATTAAGATTGTAACCATACTGTGTCA
ATCAAACAGAATTGACCATCAAAGAAATGAAACAAATTCTAATTACTTGG
TCCAGAGTTTACTCTCAGAATTACTCTGTATAGCACAACTGTGGTGTGTG
TGATTATACAAATATTTTATTGATGTTGTTCTTGCAAATGAGAAGAGGTC
CTCCACATAGTATGTTTGCAAAACTTTTTCGGATATAGCCTTTTCTAATT
CAGAACACTGGCGTTGGGCAAAAATTCTGGGTTCTATAGTACAGTGAGCA
CTTTTACGTCGGCAAAAGCCAAATTTACGTCAGAATTAGAACGGCTGAGA
CACTCGACACCCCCTCCCCTTGTATGCAGAGAACACTAGATATGCCTTCA
TCTAAATAATAGACACGCTTTTGCTAATCAACCTCCCCCCTTTCACTGCA
AACGTACTATGGATAGCCTCGAATGATAACTcaataatattatattgtta
gATAACTctactttagacagcccacttttcGCCCAGCCTATTCtgattgt
gaattaaagttggcATAAAGTGGACTGACTAAAGttaatgcattgccctc
ttttgacgtcaatgcaatgacttctttcaatcttttccaagcaTAGATTT
TAACTACCAACTTTTTGTCTACTCTAAGAATTAAAATAGGAATGGCAAAA
AGTGAAAAGTCTAAACCAGAGcttaaaattttataaacttgtagttcatc
ttcttctttttttattgtaggATGCTGAGCATTTTCACCAAACAATAAAA
ACAGCCTGTGATAAACATGACAAAGATTATTATCCTCGATACAAGAAATT
ATGTGATGACAGTCTCTTCCTAGAAATCTGTGGTAACTTTTCAGTTCGAA
TTCAATTtggatttttggtcattttaaaCTCTTCTTTAGAACATTTATGT
AGTCTAAActtctcaaaaaaattctaatcaTGCAATTGAATACTCATGTA
ATAACTCTCATAATAATCTTATCGTTATTCATGATATccgttgcaatgtc
ttctaacgTTAATTCACAGACCCAACAACTccttggttgtaagtgacgta
aaatctgACAATACATAatttgcaaccaatcagctgttgggttcgtgatg
taatgtcagaagacatcacaatggcgcatatcatgaattcttaTTATTCT
GGTGACCGTAGcataaaggtagagcatccagctacggtgcgcaaggttgt
gggctCCCAGTCGGGTTTCCCAAAAtgatacttgatgcctctctactTGA
TGCTCACCAACTAAAGAGACGAATCAAGAGTAAGttgagaaatccaggga
aagaagtggcgccctctcctaccatcaggtagacagctatacgaaaaggg
agccttcgggtcgccctcgactgcggttgCAAACTTACTACAACTGATTT
CTCATACAGATGAATACCGAGGTATTGGTGGGTTCATGTTTAATGAATTG
AAGGATGGAAATCTTGaagatttgtttgattttgttgtgacGTGTGGACA
CGCTGTTCTACCCTCTTACATACCTATTGTTAATAAACATTTAAATGATC
CTTATGATGAAGAGAATATCTTTTGGCAACGACAAAGGAGGGGAAGGTAT
ATGTTTGTTGGTGGTATTAATTTATAATattcattttttcatcaatttta
actacatttctttatttttgtttaataatAGCTACATATTGGTCATTTTG
GCCTATACATGTTATCTAACATCAAATTAGAAACTATTCATTTCATTTTC
TCGCATGTCTGAAAACAAGCTCCAGTTTAGACGGCTGACCTTCGGCCCTG
CCAATTCTGATTTTGGAGTAGGCAGAAAGTGGGCAAAAAGTTGGCAGTTA
GTGGATGGGCAGAAAGGTTGACAGACGTAATAAATCTTCTTAAAACTGCC
TACGAAAtgtaaactttttaaaatttattcctTCCTTTCTGTAACTGCct
gtttttgtaattttttcttccaTCTTTTTCAGATATGTTTTATTCAACCT
TTTGTATGACCGAGGTACACGTTTTGGTTTACTGACACCTGGCATAAGAG
TGGAAAACGTTTTAATTTCTATGCCATTGAATGCTGCTTGGGATATTCGT
TATGTACCTACACCTGGTTCAAAAGAGGACGATATGTTACAGTTTTTGAA
AAGGAAACCAAAAGACTGGGCATGATTCTTgtctttattgattttcttca
aaCATTTAAGTTTAACCTTTAAAATTTGCATGAAACTTGAATTAAAGGCT
ACTCGGGTTAATCAGGGTTCTTAGTCCTAGAAACATAAATTCTTTTTAAT
GTCGTTTATCCTTTGTAAACCTGGGGACCTAATCTTATGTCGATTTTAGG
GGTTAATAGCTGGTTTAAAAGATTTAAAGatgtaaaaagattttaaggTG
TTAATAGTTTTTCTGTTTGTTATGTATAGATTTAGTTTTATTTGTAATGT
ATAGATTTAGATTTATTTCATTTCTATGAATTTGTTGTATGTTTagtgtt
ttttttgaaaattgattaaaagtAAGATATGGGGACGTGACTTAAAAAGG
GCCTGAGTTGGATAGAATAGCGTGGTGGGAGGGGGAGGTGCCTTCAGCCA
AAAAGAGGAAATCTGTTCCAAATCTGCTCGCGCAATACTCTAAAACATAT
TTCTCTTGCTATGGGGAAGGGATGGGTTGgtgtattattttttaatatta
ttccattttttttttgggaataacttttgaaccaatgaagtaaaattaaa
aagtaatacacgAAATTTTAAGTATATCTTTCCTCTTAATTTCCgaagca
atttttgaaaaacctttCTACTACCTGCAATATCAAAttaaagagggtaa
cttatttctggCACGACCAGCAGACtattcataattttaaaaaccataat
ataattttaacttgttttttttttatcattggTACGAAAGGACCAACAAG
ATTGTAAATTGCATAAATTTATCAGATGATATTCAGATTCGATAATTTTA
ATCACTCTGGGCAGCTTAACGAACACCCGATCTGTGGTCAAGGTCCACCG
CGTTCACAACCTATGAACGTAGAAGACTTTACAAATTCTTCTTGGGTTCA
GTTggattttaaaactttattaagATTTTTTATTGATACACTTAactata
gattttttttaaacagatatCTTATAGGTAACGTATTAGCATCATCGTCT
CAAAACCTCAATTCTGTacatttgtttacattttccaTTATTaggatttt
taaaaacaataatttttagctttttcactttttttctttaatttttaaat
tattttaagtaTTGTAcattttttctagtttttctAACCCCAAAGTAAAG
CAGATTTACCCTAAACATGTTAGCTTTGTTGGTTCGGTAAGAACTTAACA
GGCCGATGATTTATGGAAAATCTGCCAACTTTTTTCACGGTTGCCTTTAG
TGCGGAAAGCTTCTGGCGCGTTTCCTGTTGCTGTAAGTAAAAGGCTAATA
ATTCTTGGCTCAATTTAGCATTATTGAGCAGTATCATTCAATTCAGAGCC
ATTTTAACCATAAAGAGAAATTGTTTAAACAAATTATCAAGGCTTGTATT
GATACACCAATGTGTgcatatttcattttcatttttagattttataatta
gctttaatttttctttttaaattcatgTTAATTCAATATATCAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00050330TCONS_00050330Clytia hemisphaericatranscript
TCONS_00050331TCONS_00050331Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00050330-proteinTCONS_00050330-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:461906..467399 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.38	0.54	0.38	0.29	4.25	3.63	7.42	7.21	5.4	4.87	4.41	4.7	4.2	3.35	4.25	3.65	4.11	4.76	1.86	2.52	3.5	3.72	2.44	2.84	4.7	5.57	5.68	4.85	1.9	1.92