XLOC_033188 (gene) - C. hemisphaerica

Overview
NameXLOC_033188
Unique NameXLOC_033188
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_215:41103..45161-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033188 ID=XLOC_033188|Name=XLOC_033188|organism=Clytia hemisphaerica|type=gene|length=4059bp|location=Sequence derived from alignment at scaffold_215:41103..45161- (Clytia hemisphaerica)
CAAGGATAGAGAGAAGTATACAGACAAGTGAAGTTATTCCGCAACCTTCA
TCAATTTATTCTCGCAATGTAAGTGTAACTCTTTTTCTTGTAATACTAGG
AGCTGGTTTTGTTAAAGATTACCTACTCTCGGGTACCTAATAGCCGGGGG
GTTTGGAATAAGCAGGGGGGTTGGAAAAAATCTCAAAATTTAATAAGCGG
GGGGGGGTGGAATAAAAATGTCCTGGGTGGAAAATGTTCGAAAAGGACGC
TGATACAGCAGAATTAGGGCAAAAGAGGGAACTTTCAAAAAAAATTTTCC
CAAAAATCAATAAGCGGGGGGGTTGGAATAAGAATGTCCTGGGTGGAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCGAGAGTAAGTGG
ATAAATTTTGGTAGGGATTAAATTTGGCGAATTTTGTTAAAATTCTCAAA
ATTAAATCATCGCCAAAATTTCCAAATTCGGCAATTCGCCAAATTTTTCG
AAATTTCCCTTTGGCAAATTAAATCCCCGCCAAAATTAAAGGAAAATCAA
GTTTTTTTTTACGAGAAATTTCAGAAAACTATTTTTGCCTTTTAAGCCGA
TCGTGTATTAACCGTATACATTTTAACAAACTATTTTTACCTTTATAACC
AATCTTATGTTACACGTATTATTTTTTCTATTCTGAGCTTCAACAAAATA
CCTTAACAAAAAACACTTTTTTGTCCTTCACCAAATTAAATCCCCGCCAA
AAATCACGTTTTGGTTATTCGCCAAATTAAATCCACGCCAAAATTTATCC
ACTTAAGGTGGCCATCCACTGGAAATTGAAAAATCGACCTTTTAACTTTA
AATGTTGATTACTCAATAACTAAAAATGATATGGGCTTGAAACTTCCAGG
TATTATTATTTATGAGTTAAAGTTAATATTAAAAAAAAAAAATTTAAAAA
AAAATTGGAAGACGGGGGGTTTGGTACGACTTTTCAGAAAAATCAAAATA
ATCTTGTGTCAACGTTTTAGAGAAAACTACAAATACTTGGTTAATGATTT
TTGGTACGTAGAGGCACTTTAGGACAAAGAATGGAATGAGCGAAATTTTT
TTTTGAAAAATTCAAAATCCGGGGGTAAAAGCCAAAAAAACAGTTTTTTC
AAAATATGAGATCTGGAATTGTGAAATCTGAAAAATCCTTCGCTCATTCC
ACAGCCCTCATAGATGTGCAAATACCCTGAAAAAATCAGACCAATCGGAC
AACTAGATCCTGAGATTTTTCCGCCACAGTGATTGGGAACCCCCGGATTT
GCGTTTTGAGAAATCGTGCTTTAAAACATAAATTGCGGTTAAATGAAAAG
ATTATAGTTTTCAATAGGGATTTTTTTATGATTTGAGCCTGTAAGGGAGT
TTTCTACATTATTTCAAAGGAAATAAGGATTTAAAACTATTTACAGTGAA
AATTTTGGCCAATTTGAGTGACATTTTGATCATTTCCAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCATTAAAATAGCACCCAAAAAAGAAT
AAACAAGCAAACAAAAGTTCTACATACCTTTGGCGCACTACACAACAACC
GACCGTGCTCTTAATCAAAAGAAATAACAAGTTACATCATGATTAAATAT
TCCTTAGAGTTTTACAAACCTCCTTGTATAATGAGAGAACCATAAAACAT
CATTTACAGCAACAAATGTGGATGAAACACTCAGCAAAAGTCAGTGAGCT
TCATCCTCCAAAATTGTCCAAAAACCATCTTTAAAATTCGAGGGCGGTCA
TTGTTTACAAAGTTTGAAAACTGAATATAGGTACACCAAGCGACTTCAAA
CCTTCTAGAAATGTTTCTAGCGACTTGAAGACGACCCGTAAAGATTTTCA
AGCTGTTTGAGCAGCTAGAGAAGGTAGAATTGCTGTTTTACTAACGGGCG
GGAAACAGGGCGTCCATGGGCGAAGCATTAAAAGCTTAAAGGTAGGTATT
TTAAAACCTAAAATTGTCTGCTTATTCTTTACATTTATGAATTGAAATTT
TCAGAGGTTGTTGTTCCAGAGAAGTTATACTTGACTTTAAGCCAAAAAAA
TAAAAAACCACCAAAAAAGTATCACTATTTTCAAACTCAGTGGATGGCCA
CCTTAAGGTATTTCGTAGAGAACTAACTTTTGTCAAAGTTCATTCTGCAC
TCATCTCCCCTTTGATTTATTTACTCTATCTGATCATGAAATTTATTAAG
TTCAGATGGAGGGTTTCGGAAATCCCATGTACACCATTTATTGAACCAAA
TTTTGTTTTGAATTAGATTCTTTATATTAGACTATTTCGACATTGTCAAC
ATTTTAAAAACCTCTTCTTTGAGTTTGAATTTCTTAAAAGTTGAATTAAT
GTTGTCAGCGATCATTTCGATCAATTATCCAAAACCACTTTTCAGATTTT
CTTTGTTCTCGTTAAAATTAAATTATATAAGGATAGGACAGGTAGAGCCT
CGACAATCCCATCATCCATTAATTCCCCTTAAAACATCCGAACATTGTTT
ATAGGAGGATTTTGAGTCATTGTTTATTTTTTTATAATTTTCAGATGTCA
GAACAAACAAGAAAATTGGGCTTTGGTGAAAGAGCCCATGCCGATCGAAA
GAAAATATACAATATAGTAATTCCAACATTATTGAAAACTAGATGTCAAA
TTGATACTCATCTACTTGATCAAGCTGTCTACAAAGTCATCAAATCTCAG
CCCAACCTCAGCGCTGTTTTAAGGTTCGAGGGAGAAGATATATACTTCAA
ACCTTTAAAAGAGATAGAACAGTATTTTGAAGTGTTACCAAAAGATGCTA
ATTGGAAAGACGTTTGCATAGAATACAATAATAAACATTTGAGAGCAGAT
TTTGAAACTTATCCACCTTTTAAATTGATGTTGATTCAACCTTGTAATGA
AGAAGCTGTGGTCATAGCTGTTGCAAGTCATTACTGTGTGGATGGGACTG
GAATTACTGCTATAACTAGTCTCATTTTAGAGACTTATTCAGAGCTTCAA
AAAGATGCCAACTACGAACCAATGAAATATCCAGCTCCAAGATCTTTTGA
AGATTATCGACTGGAATTTTTTGGTTCCGAAGAAAAGTTTTGTGAACAAC
AGAAGCGTTTTAAAGAGTTTCATTTGAACGTTATGGATTCTGCAAATTGT
TATTTTGAATTTGAAGAGAATGATCGAGTAGTGTTTACACCATATTCAAG
CACTGAGATCGAATTTGAGAATTTCAAGAAAGAATGTAAAGCAAAGGGAA
TTACTGTTGGAGCTGCTTTATGTGGAGTTCAAGCATGTGCTATGGCTGCT
TGCATGTTTAAAAATCAAAAAGATGTCCCTGATGTTGTCAACTTGCTGAT
TGAAATCCCTATAAATTTACGTGGTCGAATCACTAAAGAAGTTTCTTGGA
AGTGCGCTAACTACATGCCGTCCAATCCTTATATCACCGTCAAAATAGGT
AGAAGTTCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00052488TCONS_00052488Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00052488-proteinTCONS_00052488-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_215supercontigscaffold_215:41103..45161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68	1.72	0.57	0.5	1.48	1.62	3.1	2.72	3.69	2.97	4.09	5.54	1	1.05	1.29	0.88	0.17	0.61	0	0.34	0.2	1.32	0.87	0.8	0.36	0.26	1.3	0.4	0.38	0.88