XLOC_040238 (gene) - C. hemisphaerica

Overview
NameXLOC_040238
Unique NameXLOC_040238
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_41:461545..468071+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040238 ID=XLOC_040238|Name=XLOC_040238|organism=Clytia hemisphaerica|type=gene|length=6527bp|location=Sequence derived from alignment at scaffold_41:461545..468071+ (Clytia hemisphaerica)
catgggttgacccgggcgaaggttcattcacttgccaagtgaaccgctgc gagtgggaatcgaacctcagtcgcctgtgcagtaaccaaggtcaatgacc actattaTACCACAGCACCTGGTACTGTAAGAAcgcacctgataaatttt ggcCAGGACAAAAGGCACACCTATACCTCGGAAATTCacccaaaaaggca aaaaagtgCTAAAATTAGCTGCACTTGACGAGGAAACAATAGCTGGACTC TGCACTTGAGGTTAAAAAACCGTCTGAActtgaaaacctcaaattttgca cctgcACTCGACTTTTTCCGAGTTGTGCGCTCTAGATCCCGAGCAAACGT GAcacactctgcaaactggtTTTCCCCTGACCAGTGGGAACCCTGCTATA ATCATAAAAACATGTGCAGGCCAGTTCAAACGCAGAGTGGCTTGAAAAAG TTCTTTGTTGATGAGTTTCATGGTTACATTTAAACAACATAAGATAGTCG AAAAATTAATACCTTAGGGCCCAATGTGACAGCGACAGTATCAGCAAGAA GATCAACACCTTTCAACATCAAAGCTCTTGCTTCGGTACctgttttaatt tcttttggtGCATTTTGAGAGTAAGTGGTACTAAAACAGGCCTGTGCAAA TCTTGTAGGGGTCTTGGTAGAGCGAAGTAACGGTCTTGCAAGTCTTGTAA TTCCAGACATTTCAAGGTTAAAGCGATGAGTCGAGAGGATGCCTCCTTTG TCCTTTGCAGTTTCTGTTCCAAAAGTATTTTGTTCGAAATGACTTGCAGC CCTGTGAGCATGTGCACATTGTTATTTAAACCCAGGACCAGAACATACCG GTTTTTTAATGACGCAATGAGAATTGTTAAGGGCAAAACCTATTgaagaa agcaaaaaggttCTGGTCTGTGAAATTACTTCTAGCGAATATTATGAGGC AACATTTCTCCAGAAGGTTCTGCCATTAACCCACGTGCTCACTTTTAATC AAGCTAGAATTTGCTGaccaggtttgttttgattttcccttTGTTAATTA TGCCGACAGCCATTGTTTCTGTCGTATTCGGTAATTTGGTACAGGTCAGT AATTTTTACTAACAATGAAAGATTACGCAATTGAAACAAATTCATCAATG AACTTGAAACTTTTGCAAGAAAAATCGAGGAGAGCTCACAAAAGCAGAAC GTTTGGGGAAACTATCAGCAGACTTTTATTCTCCTAGGAAAATAATATAT TCGTCAACGAAAATGGTATGTTTTTTCAAATTAACAGTGATTTTTATCTT AGTTCTTTACCTGTTTTGGGATACACGAGCATGtagcttttgaatttatt ttcttgaaaaatccaaCAGCAAAGCCTGCAGACCCAGTATgataatgggc cattccagaatttgtctgtaacaggggtcGGATGACACAGGATTTcagag ggcaaaagttttcaccaaattcgaaatttctataaggtgagagaagaaaa tgtatgaatttccaaggcaattgaatttaaaaaaggcaagaaagagtgga atttccgatgcattttgcaaaagtacatggattttcatcggaatttccga ccaccactggaaaagaaaaattatttctgaggctagaaaaaatttaaaag tgcaaattgtgaataaaattttggatagtagtaaaagtttgaaaatacac cgtttaggagtctcgctatctccACCGTGTTCCACCGTAAAAAcagtagg taaaaatgcgctcTTTAGtatactgtggaaggttagaggaatgtaaacat tgtcaatttttttctttcctttaaagagaataatagtttagatatttgaa catgatatcaatgataattttatggatctcctgaaaatttcacaaaaatt catctagaggaaaagaagttatgattaaaagaaGTTCTTTACCTACCTTT TCTCTGCTAGGTTTCCTTACGAGAACCGGAATTTTGCCTAGCGTTTATTT TTACGAGAAAGAGCGGTcgtttaaatcaaaacaatggaaaattgtttgga cgtgtgcgcagtcgacactactaAATGGTGTATTACCgagagattgggta acttgcattagtggaggctaacatgcatagccctcaaatgaaggACCttg ctggtcattaaaatacaaagttaaataaaaacaaacatggTAATGGTAGA GTAAAgatgcgagcggagctgcgtagttgtattttaatgaccagtcaggt cattcatttgagggctatgcatgttagcctccactgatgcaagttaccca atctcacggtagatCAGTGATGGAGGTAAAAGATTAAGCTTGTTACATTC TCTGTAAATACACCTTTCCGGTCAAACAACTTTCCTGTAATTCCAACTTC TCAGTTGTGGCCTGGGAAGACGCGTGCTCCACTGCCGTGTATCGtgagtt ggtctaatgttgacattcCTAATTCCGgaacccttctttagagataggaa taattggAAGGTCGAAATCGCTGCCAATAGAAACTATTTTCTTTGCTAGG TTATCAGAGAGGAAAAAACCTTTCGTCTATGACTAGAGGGTGTCAATCAG GTGAGGATTATACTCTAAATAAAAGAATACCCAAATTAGAAGACTACctt ttttaggagatttttagTCTCCTACTTAAGAGAATCATACCTAAACTAGG AGAATTTGGCACATTTGACTGATTTGCTTTAAGGTTAACTATTTgcgtaa tatgaaaatgtgaCGACATGAAAGATATGTTTCACTGACTCCAATGactc aaaaaccaaaaaaacaccTTTTTATTCGTTTTCAATTGTCAAAAAACCAC AAAATTTGACTTATTACTGCTGacaaaaccaaatcaaaatgaaagatagt gaCCTCCACAACACCTTTTTCTAAACATAAGCAGAATTCAACCAAATTTT ATCATGAATAGAAAAAAACACATTAAAATTTGAGTGGATTCTGTTCAACA TAACTTAAGGAAAGCTAAAAAACAACTTTCCTTAAGGAAACACAGCCGAA AACAGGTTTGTTTACCTACCCACAGACCAAACAGTGGAGAGCAACAAAAT ATGTGGGAGCATTTTGTTGCTCATCACTGTTGGACTCGTGAGGTAAATAA ACCTGGTGTGTATAACTATAGATCATCAGGTCTGGGAAGgttagtttttt ttaacttttctttaATAAGCTTGTCAAACAGAATCATCCTAAATTAGATC ACTTTTCATGCAAGCATCCAGTacttaaaatcactaaaattgtTTTGGTA AAAACAACCCTTTTTGGAAGGAAACATTATAGAAAGTACTATTTTTCGCG CACTGCTGCTCTACCTTAAAAAATATGGttttcaaatcttattttggTAA AGAACTTTGGTCATACGCACAATAACTTTGGTCATACGCATGTTCCACAA CCAAGTCAAGTCTAATTGACTAACTACCTGATTCCTCATCGCACGATTTA GTAGTTGGGAATTagagggggttggaaattttggggtTGGGTTCCCTGAC CAAAGACAATGGGACTAAAGTTCCCATACCAAGAGATCAACTGAAATTAC AAGGTAATCAATCTGCTTTCCATCTAGGTCCCAGGATACTGTTGTTTTAC ATAAGATCTCCTTTCCTGCACTAAGATTCCACTGCCACTTTTCTACCAGA AAAAGACCATAACTCAGGGTAGTTGAAGAATGAGACTCGGAAAATTGGGC TGTTTTgtaagtaaacacaagattttccgtacctttagaaGATGACTCCA ATCTCTTGCCAGCTTTCtcgggaaaaatagaaaaaaatcctGGTAAAGTC AGTAGAATCTTAGTACGGGAAAGGGAATATCATGCAAAACTTATCTACTT AACTACTTAGAGATTTTAAGAGTTTTGCATATATAAGGTCAAAAAAGAGA ACCTGAGAACAAGAGGAGGGTTGAATAAAAAAGAGGGTTGCCATTTTTAA GGGGGGCTTGATACCTTTGCCCACTATGCATTTGGCAACTGATGTAAAAA TTCATATACATTTTCTACCTTTTAGGTATTTCTGAAACTtgtaaaaacaa atttaataaCATTTCATTATTTACTGTATTTTATATTAGTATAAAAGAAT TATGTAGCCTTTTTATGCAGGACCTCTAAGATAACAGTTTTAAAAAATAC AAGGTTctgatttccaaaatttaaaggattttgtCGTGTTTTCCAAAATT CAGAGTAAAAAATGTTTTANAAGGTTctgatttccaaaatttaaaggatt ttgtCGTGTTTTCCAAAATTCAGagtaaaaaatgttttagtttcattttt cacccatccatatttttctattgtctttgaGCCATTCATTTTGCCCGAAA TTAAGATTATCTCCGTTTCAAAGATTTCAATGTAAAAATAGGACTCAGAT ACCGAACCaattttaaaatctcaaaaaactgAATAGATTTTGTATGAGAT CACTATATCACACTTACTATATGTATGTATATTATTTATGCTACAGCTGT TGAATTATCCGgtttaaaaatgcttaaaaaaacTTCTTTCGTATAATAGT AACATTTCTCTTGTTATTTTAGTCTGCCTTGAGAAAGTTCATCCCATTGT TCGACAGAGTACTGGTTCAAAGATTTGTACCTGAAACAGTAAGTTATTAT GAGATGAGTAAATGCTACTTGGTCGAGCTTTCTTGGTTTAATTTCAATTC TACCTCTCTCATCTTCTCTCCCTGGTTTTAAAATTGATATGAATTTAGGG TTTCTGGTATTGTATTCTTATCTTCTtgcaattttcgggtcagggatCAT TTTGgatcattttctgaaaaaagttgCTTTGACTACCCCTAATATTATAC CTACTTTACACTATTTGGGTAAAGGGCCATCATCTACCATGGTTATGAGG TAGTGAAGAAAATTAGCCAATTTGAAGGATCCATCGTTAGCAATTTGGTT ActtattgaaaaacttttgctCGTGAATTCttattgtataattttttttc tccatagtCAACCAAAGGGGGTATCCTATTGCCAGAGACGAGTGTCAATA AAATTCCAGAAGGTACTGTCGTTGCAGTTGGACCAGGAGTAAGAAATGAG GTGAGTCTTTATTTATGTGATGTCTAAACAGCAGAAAATtgcagcaaaaa tattttatggtTTTCCGTAACTGAATTCAATTTGAAGAAGTTAAGACACT TAAGAATTTTAATTTGCAAAGTtacattatttttgttttgggtTATGCTT CAATTTCGAATATTCTATCATTTGTGCTTCTTTACAGAACGGTTCAGTCA CACCAGTAGCTGTTCAAGAAGGCGATAAAGTTGCTCTTCCAGAATTTGGC GGAACCAAAATCGAACTCAATAGCCAGGTAAATATTGTCAGAAATGTGAT AAGAATCGGCAATAGCtcgtcttttttttcttctcgcTTTTCCGTTTTCT CTGTAACTTTTGAAAAGTCAAGGTTTTTTGAAATGCCTCTTTGTGTGGCT ATGCAATTTAAATTACGATTTTATCAAAGATTAGGTTCTCTCTgacaatt ttttgactttcgGGACTCTATATTAACATTAAGTCATTTGCTTATGCCAC GGTCGAATTGAATTATCGGTATTCAATACTAGTTGTGCTTTTGATAAcga cttcaaaaactttgacaaTCAATTTGATCACCTATCATttatttagaatt tagaaagttGCCCAACATATTTTATCCTTTTGTTTTTCCTCGTCAGGAAT ACTTCATTTTCCGTGAACACGAAATCCTTGGAAAACTCGAAAATTAAAAT CCAAAACAAATCACACACTGCATTCACGCTCAAGGTAGAAAGTTCAGGGT AAAACATGCAAGATTCGCTAAGAAGGAGATAACGTTATGACAACCTCGTG TAAGATATACAGAACCagtttttataccaatttttaATGAAAGAGAGACT CTTTATTCGAACACTTAAACTCAAATTTATCAAGACTATTTTTTTCTATG CTTTACAGAttgtaaattttataaaataaaattgaaaaataaactaaaaa aatacaaaaatataatatttactACAGCTTGTTTGTTACTTTCTGTATGC TCTTGCAGGTGTTGCTTTGGATtcaattcaaattctttttaaatatttta taaagtatagatatttacaattttcgaaaaaatatagtCAAATAATATGG CAACACCCTACTCGATATCTCTGTACTGTATCGAGAGCGCCTGATCTACT TTTCTTTAAACTCTCCCAATGTAGCTTCTTTTGATGTTAGGCGAAAATTT TATTACTGCGATGACTTTGCGAGTACCActtcaaaaaaagattgatcAAA GATGGCTGCTATAGCTGTGTCCAGGGTTTATGAAGAATGGTTCCTGCACT GTAGTCATTCGAAATTGAGCTAAAATCGGGGTTGACTTTGTttgttactc tcgggtacctaatagccgggggggggg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064172TCONS_00064172Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064172-proteinTCONS_00064172-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:461545..468071 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
HSPE110 kDa heat shock protein, mitochondrial Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
146.88 144.97 37.68 28.38 165.54 126.56 104.22 112.3 79.78 61.77 53.72 76.01 79.95 94.35 88.7 100.89 133.3 102.91 18.21 21.12 79.21 82.47 120.19 104.73 59.72 67.47 68.17 44.59 91.09 77.94