XLOC_033820 (gene) - C. hemisphaerica

Overview
NameXLOC_033820
Unique NameXLOC_033820
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_233:1007580..1011154+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033820 ID=XLOC_033820|Name=XLOC_033820|organism=Clytia hemisphaerica|type=gene|length=3575bp|location=Sequence derived from alignment at scaffold_233:1007580..1011154+ (Clytia hemisphaerica)
ATTGAGGGAGCCTGAACaaaccttttgaaaaatgtttcatcaAATTGTAT
AATTActgttttcttcaattttccgTTTATTTCACTACAGAACGAAGATG
GGAAGGTTATATATCATCTGTGGATTGCTGGCAGCTTTCATTGCACTTTC
ATGTGAGTCTTTAATACTACGTTGGTAAGGCTTGAGCCCtgaaatttgtc
aatttttttcactatctcgtaaagtaaaagcttttatATAATCTAAGCAT
GGCAAAGGATAGCCCTcgacccaataagcataaatatggtttAATACCAG
GGATGgtcaaagtaaatttttcagaaatttaaagcccTGACCCGGAAATT
TGAGTTACTTATTGGATTACTAAGGCTTTGCTTTTTACTCTACCTCATTA
GAATACATAATGGACCCCCCCCCAATAATACTGTGAGGACAAAATGTGCA
AAAGCTAGAATTAAAATGTTTTATCCTAGTATTCACTTTGGTTGAACTTT
TTCTTCCTTGAATGTATCAGATGGAGCTGACaaatgtgaaaatgaaagtt
gggATTTGACATGCTGGAGAAAGAAGAAGTTTACTCAGAAGGATATGTGC
TACAAAGCGGAGGGTAAACAGAAATGCGCTGAAACATGTAATCTTTGTAA
CGAGAAGTGCGGTATCTCCAAAGTTTCACAAAGTCGAATTGTCAACGGTG
TCGAAGCGAAAGAAGGAGCTTGGCCATGGATCGCCTCTCTCCAACTTCAA
GGAAAACATTTCTGTGGAGCTACCATTTTGACACCAAAATGGGTGAGTCG
TCTGAATCCCTTGGAAATGCCGAAGTTGACAATAAGTGTGATCTTTCATT
GAAATCTTCGTTCAATACAAGCTGCCCCATTAACAATCCATGTATAAGGC
TTAGCTACACAGCGAACTCTTTAATTTCTATTATTTAAGGAGTGATTGGT
CCAGCAATAGAATAGCCCCTTAAGATTTTAGAAAACTTTATATTTCAGGT
TCTAGCAGCCAGTCATTGTGTTCAACCACTGAAGAACATGCCAAATGCTA
TGGACGCGTTTACCGTGACACTGGGAGCTCACGATATCACCAAATCGGAA
CCTAAACAACAAACAATCAAAGTGAAACGTTTCATCATACACAAGGATTA
TGATACACGTGTGATGATGGCAGATATCGCTCTTCTGGAGCTGGAGACAC
CAGCAATGTTCAATGATCGTGTTGTGACACCCTGTCTCCCCAATGAAGGA
AGTTATCCACCAAAAGATTTGAAATGTGTGGTTGCAGGTAATGGTGCACC
TAAAGCTTCGAGGCCGAGAATCTGAGAATATCCTTAGAACATTAAGGCTA
TGCGAGCTCAAAaagatattgaaaagaaaaaactatttaaaaaactaatt
ttaggcttaattaaaacccaaaaatgttttgaacttttaaatggttttat
ataaaaattagaCATCTAGGTACGTCAATCAGTTAGCTGGTGGTCTTATA
CAGGCATTTTCATAAATAAACTACTGGTTTAGTTAAGAATTTCCctctaa
aatgataaaatagtCCCGGGCCCCGTTCATTTCCTCGTTACATACAACAG
GTGTACGCTCAGAAGTCACTGATACAGGaaccattttgagaaaaaaaagc
tttagattatttttcttttactaTAGGATGGGGCATTACCAAATTCCCAA
GCACCGATACCGCATCAAAACTTCAACAGACCATCCTCCCAGTGGTTGGT
ACACCACATCAAGGTTGCCATAACAACAAAGAAGTTGTCTGTGTTGGTAA
CGGATTCACCAAAACATCTGAGGGTAGGAGATATATTTAGTCTTAACTTT
TGTCAAACATTGAAGACCGACTCaaacttttaaaagtgtttttcaGATAT
CTTTCGTTCAATGGAACATCTGACTTGAGATCGTCCCGGGGAGATTTTAA
CCCGATTGTAAAACTCACTGGGAAAAAGACTGTAACTTTGAGTATCCTGA
CTTGATTTTGGAGAAGTTTTTAAATAATGGGATTTGTAATCTCACCAATT
TCAAACAGACCATTCTCCATTTGGATTACACAAACAGGGTGTTTCTTAGA
GtgttatttttccttttcaggTAAGCAACAACCAAATGCATGTCAAGGTG
ACTCTGGTGGTCCATTAGTTTGTCAACTTCCAAGCGGTCAATGGAGATTG
GAGGGTGTGGCTAGTTATGTTCACACTTATTGTAAATACTATACAGCTTA
CGCTCCAGTCAATAAGTACATGCCTTGGATCAAACAATATGTACCAGGAT
TGTGAAAAAAGATTAATTTTCACCTGAAAATATACCATTAAtaaatatta
aatttatttcgtcaaaattttttccaCGTGTTTTTACTCACATTTCGATA
TATTATCCtatttactcttaggtgccaaataaacggccccccccgcttgt
tagtttttggtttttttccaacccccccggacgttattaggacccccccg
tttataaatttttgaaaaaattcccagctcccaaaaggaaagtttcttgt
tttactctaTAAAGCCTAAATTTggtctattttgaccctttttagggttt
NAAAAAACTAATTTTAGGCTTAATTAAAACCCAAAAatgttttgaacttt
taaatggttttatataaaaattagaCATCTAGGTACGTCAATCTGTTAGC
TGGTGGTCTTATACAGGCATTTTCATAAATAAACTACTGGTTTAGTTAAG
AATTTCCCTCTAAAATGATAAACTAGTCCCGGGCCCCGTTCATTTCCTCG
TTACAGACAACAGGTGTACACTCAGAAGTCACTGATACAGCAaacaattt
tgagaaaaaaaagcttccaatatttttcttttactaTAGGATGGGGCATT
ACCAAATTCCCAAGCTCCAATACCGCATCAAAACTTCAACAGACCATCCT
CCCAGTGGTTGGTACACCACATCAAGGTTGCCATAACAACAAAGAAGTTG
TCTGTGTTGGTAACGGATTCACCAAAACATCTGAGGGTAGGAGATATATT
TAGTCTTAACTTTTGTCAAACATTGAAGACCGACTCaaacttttaaaagt
gtttttcaGATATCTTTCGTTCAATGGAACATCTGACTTGAGATCGTCCC
GGGGAGATTTTAACCCGATTGTAAAACTCACTGGGAAAAAGACTGTAACT
TTGAGTATCCTGACTTGATTTTGGAGAAGTTTTTAAATAATGGGATTTGT
AATCTCACCAATTTCAAACAGACCATTCTCCATTTGGATTACACAAACAG
GGTGTTTCTTAGAGtgttatttttccttttcaggTAAGCAACAACCAAAT
GCATGTCAAGGTGACTCTGGTGGTCCATTAGTTTGTCAACTTCCAAGCGG
TCAATGGAGATTGGAGGGTGTGGCTAGTTATGTTCACACTTATTGTAAAT
ACTATACAGCTTACGCTCCAGTCAATAAGTACATGCCTTGGATCAAACAA
TATGTACCAGGATTGTGAAAAAAGATTAATTTTCACCTGAAAATATACCA
TTAAtaaatattaaatttatttcgt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00053596TCONS_00053596Clytia hemisphaericatranscript
TCONS_00053597TCONS_00053597Clytia hemisphaericatranscript
TCONS_00053598TCONS_00053598Clytia hemisphaericatranscript
TCONS_00053599TCONS_00053599Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00053596-proteinTCONS_00053596-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:1007580..1011154 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.4	0.66	0.4	0.44	1.34	1.06	1.48	2.44	1.74	1.95	3.42	1.22	354.06	338.17	67.14	144.6	17.6	23.02	951.92	823.1	114.85	124.39	25.78	31.68	110.48	125.66	2.29	1.8	2.2	2.29