XLOC_034494 (gene) - C. hemisphaerica

Overview
NameXLOC_034494
Unique NameXLOC_034494
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_245:43280..47516+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034494 ID=XLOC_034494|Name=XLOC_034494|organism=Clytia hemisphaerica|type=gene|length=4237bp|location=Sequence derived from alignment at scaffold_245:43280..47516+ (Clytia hemisphaerica)
CATCATCATCTTTGCTATAGAGAATGTACAATTTGATACGCCCTTTTTAA
GGCACAAAATAATAGCTGATAATCTTTATTTCATTATAGGTGAATGATAT
CGTGTTTCATCCACAAATTGGAACACTGGCTACTGTCGGCTCAGATGGAA
AGTACAGTTTCTGGGATAAAGATGCTAGAACCAAACTCAAAGTATGTGTT
ACTTAAAACTGCCGTATGTGTTTTTGAAAGCGTCCTTTCGATGTTATTTA
GGCGTTTTTAAGGTTTATTTTATCATAACCTGATCCTTTCAGTATCNGGA
GTGCCAAATGGATTTGCATTGGGATCAGTAGAAGGAAGAGTTGCCATGCA
ATACATAAATCCTACCGATCCGTAAGATTGTTTATTAATTCATGTGATGC
AGGTTTCATTTAACCGGTATCAAACCACGCTCTAACTATCACTATCCCTT
TAAGTGTGcacttatttttcttttgtttacccCTCTGTACCcctttcaat
gaaaatttaaattttattattgtatcATTAGAATAAAAAGACGAATATTA
AAAAAGATGAATGATTGATTTTTCTATAGCACCaaaattttttacttcat
tttcaatttttttaaattattttccttaAGAGAAATCCAGTGAAACAGGT
TGAAATGTTGTAATCCAAGATGTAAGTCCAAGATTCGTGAAAATCCCCGA
AAGTTCTTCCTCTCAAACGGTTGAgtgaaaacacaaaaatttttgGGGTC
CCCAAAAAGTCTTTTTCCtttctaagggtcgattttcgctTTTTGGCTCG
GAATTACCCGTCACTTACACTTCGCAAATCTGGTACCCCCtagaatcaaa
acaaagattagttcACACCTAAAACGAACAAGTAAGGGAGCTCGGTAAAA
GGATTGGTATTGTTCTAAAGTGATAAATCACCATATTACGTTGAGGTTTG
AGTTGCTTGGATCAACCTAAATCAACTCGCTGTTTGATATGATTTCACCA
AAGTTATCCTTGAATTTCAATTTGCCATACATTCTTTTCAATAGATTTGG
GTAACTAAATAATGTAAGGGTGACAATTTAATATTACAACTGTTCctgat
ctttttcttttttttttacagtaAAGACAATTTCACTTTTAAATGCCATC
GATCAGATATAACGTCCGGACAAGTTCAAGATATCTATGCTGTAAGTATT
TATTGCCCCCACTAAAACAAGGCTGCGTGGGTTTTGTTATTTATTAGGGA
CTCTACGTGAATCTTGAAGGTGATTTTAGTTATTGGTGAAATTTATTCAA
CCTCACAAAGTCATTTACAGGGTAAAGAAACTGGACagatttttatataa
agtaaaattctcATGCTTTGTGCGAAATTTTATGACTCGTATACTTAATA
TTCAATCTCAAAAACGTATTCAATCATTTggaattttaatatttattggT
TGTAATGAGAATTCTGATGTTATTTCAATTATTCCAAGCCCTGGTTTAGA
TGACgagttttaaggattttacttttttctgcTTTTCTTTTGAGACACAC
TGTTTATGTGTCATCATCATCTTTGCTATAGAGAATGTACAATTTGATAC
GCCCTTTTTAAGGCACAATATAATAGCTGataatctttattttattatag
GTGAATGATATCGTGTTTCATCCACAAATTGGAACACTGGCTACTGTCGG
CTCAGATGGAAAGTACAGTTTCTGGGATAAAGATGCTAGAACCAAACTCA
AAGTATGTGTTACTTAAAACTGCCGTATGTGTTTTTGAAAGCGTCCTTTC
GATGTTATTTAGGCGTTTTTAAGGTTTATTTTATCATAACCTGATCCTTT
CAGTATCCAAAACATAGCTTGGAATCTGAGCTCAAAGAAGACTCTCTCTC
AGGACGCGTCCCTTGTGGCCTAAGGGTTAAAGCGTCCATTTCGATGTTAT
TGAGGCGTTTTTTAAGGTTTATTTTAATTGGAAGAAACACTCGAATAGCA
GAAGAACATCTTCCAATTTTAATGTTTActttcataatggcggattctCT
GCTAAGTAAGAAAATCCTTGCAGAACCTTTAAAAACCTCTATTGTAGAAT
GTAGGGTAGAATTTCAACACCTAAATTGAATTAAATCTGATTCATTTGAG
TTGAAAAAGTTCTCCTTTTTTGTAGACTTCCGAAAACTGTGGACAATCGA
TCACAGCTTGTTGTTTTAACGCTGAGggaaatatttttgcatattccACT
GGCTATGATTGGACTAAGGTATCTCATCTCCTTTTAAAACAATTGATAAA
CCTTGGATAAACCAGTAATTGAATACTTCGTAATTGAATTATCTACTCGA
TTTATCGCTTTGCAATCCATCACTTTTCTTCCATCCATTTGATAGCTCTT
CAAAAAGTTCTCCGTAAAGTGACTCACTTTCCAAAAGTGATACACTATAA
TGGTTTTAGTAAAAGATAAATGTCCAACTCAGAAAATGTTAGAAAAATCC
CagcatctttttctttttcctgatAGTAACCTAAGGATCTTTTTCTTTCA
CCTCTCAGTGTTCCCACTTTTTCTTATCGCTCAAAGAGATCCCTGTATAT
GATCGGCGTCGATAAATGATTCACTACGTCACCAATCCGATATTATTCCA
GGATTTTTTAAACGGGTTACCATCGGAATTTACCAAGCCCTTTCACTGTA
CTTTAAGTAAATTTCAACTTATTTACAACTTCTAACTTTTACTGTTTTAG
GGTCATGAATTTTACAATCCGAACCAAAAGCCAGCGATTTATTTGAGAAG
TTGTGCCGATGAGATGaaaccaaaaaccaaaaaatgaaaattaagaaaCA
AGAATGGGATGGGTTTAATAAAACTTTCTAGAGCATATTCATTCCATGTG
ATCCAtcagttttattttgaagtcgCTTGCTTTTTGGACTCATCTGACTG
ATCGATGTAAACAAtggattgttttttttctgatcaATGTAGACAATGAA
TTGGTTTGTTTTTGTGAATGACTCATAACACTGTTTGAGTAGAGAACATT
TCTCCAATAAGCTATGAACTGGTAAAAGGGTTCTGGAATCTTCACGAATC
CTTTTCGAATTTAATGATATCATATACGCTTACCCCTATACGCGGGAatt
ataatttcattttaagAATCAATTTTGAATGTCTAGAgagaatctttttt
attttaataaacaTCAAGGTGCACGGACTTTTGAGACGCATCGGTAGTGT
GTGAATACCATTGTTCAGTCAGGGTTTCTAACATTATgctaaaatatatt
ttgtatcTTCGATATaaatttactttgaaaaatgaatttgagtACGAGCC
AGATTGATTTTCACACTGGACAGTGTATTTTTAAGTCGGACGCAAAGACT
TCAAATTTGTATAGTAAACTCTTGAAAGAGGAgggttttttattttattt
taatattttgtacATATTCCTGGGACTTTCCGTCTTAACTTTCCGTTGCA
TGAAACTTAAGGAAATTTCATGATCTAGAAGAGCTCATTGTAGGTCGAat
atggaagaaaatttctcacCCTCGTTGAGTCACAACTACAGATATCGCCT
TGACCACCTACTGACCTCAAATTATGgattagtttttcttttttccgaCA
CTGTTGAATGGAATCTCCTTTTTTCGACTTACTGATTACTCTCATCTTAT
TGTTAGCTCctcaaagaagaaaagaaggaaaaaaattagggaaatttgcc
caaaaaaagcTATCCCGGTTACATTACATAGAGGTGGTTTTCTCTATTGT
TGTTCTTACATCACCCCTTAAAGAATGTAATAATTGAATAAAATGTGAAT
GAAGGGAAAATTTTActttcctttttgaaaaaaatgtcaaagtttttcaa
tcttcctcttttttcatgattttgtttGTATGTACATTTTTGTTGGGATT
GCTCATTTGAAAGAAGGAATATTTTCTGGGCTGTCGCTCTATGAGAGTGG
GAAGTCACTTATTGAATGTTCTTCCCTTTCCAGAAAGATGAGAATGTGGA
ACGAAATTAGATCttaaataataattataatgaTTTGTAAATTTCTCTGG
GAATATTGATCATTAAAGAcgtgaaaattttgattttggataaGTGAGCA
TATGTTTTTAGTTCGGTAATGAATCATATTGTTGAAAGGAAAGACTTTAG
GAGTTTGCTTCAAGTCCTTTTAGCAAATTAACGTGAg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00054749TCONS_00054749Clytia hemisphaericatranscript
TCONS_00054750TCONS_00054750Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00054750-proteinTCONS_00054750-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:43280..47516 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.93	43.02	59.6	56	35.76	26.13	25.13	27.77	23.77	22.14	15.7	16.23	16.38	15.71	21.49	23.21	26.37	26.66	13.37	15.04	33.09	30.57	33.32	30.65	12.12	15.64	18.81	19.85	18.36	17.77