XLOC_035846 (gene) - C. hemisphaerica

Overview
NameXLOC_035846
Unique NameXLOC_035846
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_284:1274395..1282738+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035846 ID=XLOC_035846|Name=XLOC_035846|organism=Clytia hemisphaerica|type=gene|length=8344bp|location=Sequence derived from alignment at scaffold_284:1274395..1282738+ (Clytia hemisphaerica)
cAGCAAAGATGAAGCTCGCAATCGTTTTAATGTTGTCATTCTGTTTGTTC
TTACAAACTCAAGCCAGGAAAATTGATGACGAGAAATATTTCGAGAAAAT
GGAAAACGACCCAACCCGCTGTGTTTACGAGGGAGGTTTTTGCCATCCAT
TCAGTAGATGTTGTGCACAAAAACATCAAGTGCTTATGTGCATTGGTTTC
AAGTGTAAAGCACCAATGAGGATAGTAAAGGGTTGGTTTGGCAAAAAATA
ATCTATTTGTGTTTTAAACCAAGTATTTTAATTTTCCTTAACGctagcat
tttcattttcatggaaGAGAAAATCGTAAAGACTAGAATTTATTTCCTAT
TTATTGTATCTTATGAGAAAGTATTTCCTTTTATGGCGTCCATCaggtac
atgatttttttatataagagctAATAAATTTTGGTTTGGACTcctatttt
tagtaattttgAGGCGTGTAAAGTGGGAGGGGTTTGttggggttcgaaat
accgtaaTACAGTCAAATGGCAGTTTAGTACAGTATGCTATAAACAAACA
ATgatataccattattttggtaataaaagagatgacaaaaaaaaaacaga
taaataactTTACCTTATCTCTATGAGAAGATATCTATGAGATGGACACa
aattgctaatatttgtagactaaatttgACTTCANGAACAAAAAAACGAT
AACGTAGGTTTTAAAGAGGTAAGGTTCACTCGACCATTTTACTCGACTTT
ATAATGTCGTCTAGCTGCTCTAATTTTGCCATAATTTATCAGAGACAGAT
CCGCATCGCAGGGTGTAAAGTAATAAACCTTGCCTTCTACGACTAAACAA
ATAAATGGACAAagtgaaaattaatttcttagTGAACACTACAGAAGGTT
CTTTCTCTGATGATTTTGTCGGAAATAAGCGATCGCCAACAGTGTGTTTG
AAACACGCTGACCTAGTTGTATCTTATGAGAAAGTATTTCCTTTTATGGC
GTCCATCAGGTACATGATTCTTTATATGAGAGCTAATAAATCTTGGTTTG
GACTcctatttttagtaattttgAGGCGTGTAAAGTGGGAGGGGTTTGtt
ggggttcgaaataccgttgtcccgtcaaaatttttgctgaatcccggaat
cccgaaaattaaaaaaaaatgataacacCATCACACCGGTTTTTAAAGGt
taaaataccggcataatggcAAAAAaaggctaaataccgtcacTGTCTTA
Ttttgaaataccgttttcccgtctcttttttcatcaaatcccgtaatacc
ctactaaaaagggccaatcccgcgACACTGTAAAAGTACGAACCCCCCTA
AAGTTTAAGtgtttaaattgttcttaacttattcttttATTGTCTTAAAA
TAGGCTGAAAATATGCATCATCCAAGTAGTATTTCCGAATTTTGGAAATC
GGACAAAacaattccttcggtatttcggaatgctgaaattgtttcggtat
cggaaatccatgaactTTTGCTTCGGAATTTTGGTATTAtgaagttttta
tccccctttttcatgagatgttctggagtttttataagtgCAAAATGGAT
GTTGATGATGTAAGAAACTTCTGAATTAAATTATaatggtaaatctattt
tataTGATTTGTGTTTTTAGTACATTGTATATTTCTgagtcactgcagta
atcaactGCAGTTGATCACTATTTTGAGAATTGAGATATAAGTTTTACAT
AAGTGATAAAGCGGGAAATAGCTCTTGAATTCCAAACTCGTGTAACTGAT
GGCATGTTCAAAATAGACATAAGTTTGGCAGAGAAAGCTTAAAGGCCTCA
Attatagtctagcaagctaaacgactaattcataccctgagtatcagagg
ttgagttttcaaagaacatgTCAACCTCTgtagaccaataatagaaattt
tatcgcgcatgtgtcaatctaatcactgtagaaagaatcttctatacagg
gtgtccctaattaaagtatcgagtttgaacatgcgattgagtagaaagtt
ttatgtgcgtgttcacaaaattgtattttaagctctccctNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGTTTCAAG
GGGTCCCGAATTCCGTCACTCCGtccaattttttgtcaaattccgTCATA
CCGTAcaaaaggaaactttttttcCGTCACCGAAGATTCCtttaaaattc
aagatttttgtcaaaaattccgcgaatttagaatattttttgctaattcc
gaaattccgcaagtgtttttgccaaattccgtttttccgcactaaaattg
tctaattttccgtctccgtcagagaacccaatttccgtaattccgtctaa
attttcgccaaattccgccactccgtccgaaaaaaggaccgattccgctc
ctccgcaaaccatgaacccccccctaataagcctgtgtgatggagaacgt
tcttatattttagcgataacacacacaaacttttctactcaatcgcatgt
tcaaactcgatactttaattagggNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNctatattaatgtctagcagattgtatcagtatgcatgt
ttactatttacgaattccccagaaacctccaagtgtaattgaaatgagtt
tctttcaaaagaaatcgtcTACATGATTCCTAAATGTATAatagtaatta
ctaaactattaattatggaaatataactttaatgaaataaaaataataca
cATATCTTTTTGTtacgattctctatcactgactcttttaaaaagcattg
atgacattttttagtTATGTTTTCAACGGCGGGAATAAAAACATTAACTT
TGAATTTAATCCAAGATCTTAGATTGTCGTTatcgttacttttctctgcg
ttgattgcgctgaatagaatctggattggtggGGACAGGTCGATTGGTGG
GGACAGGTCGATTTATGGTTtcggcctgtgcttttcacggtcaGATTTTA
GATGGTGTTTGTATTGCTTGTAAAGCAGTCGTTTCTGATTGACGTGTTCA
TGTGTTAAGCATCCAAACCATAAGCCAGTCGCCTGAAAAAAAGTGCCAAT
AAGATTAATACTTTCTTGATGAGTAAACATAATTACTTATCTACAATTCT
AATCTTTTTCAACGTAAGATTTTCGGCCGTAATCAAGGGCTTCCAGAAAG
AGGAGGGTATTACTCTTTCTCCCTGGCTTGCTCGACCTCACTGGCCTGAT
CTGTCTTTTTCAGTTATGGAGCATCAAGTATCAAGGACCATtttggaatc
tttggtatgaccggTTAaacctagacgatgctatcaGCCGTTTGGGGAAT
AGAAAACGAGGGAAATATAGGCGGTGTGTACAGCCGTCAGGGNgaaaata
ggttgttccagcgatttttaaatagtttcggcttcaaaaaccaattttat
tgaaaattgaattatgcttgatggtgggcattgctattgataatgttttt
gaatgaaaaaacaacgaattaAGAGGAagaagtccaatgaaaatccagaa
aaacggcaatttccagaatgtttccggcattttcggctggaaaaaaatta
ttctcaaaaatcgaactcggccatgttttgggcattgttagtacgcatct
ttgagcaaaaaatcagaaaaaactaatgataaaatctcgagaaaatgcca
aaaaacagtttttccggcatatttccggcattNTGCGAGgagaacaattt
aaaaaatcagcCAGGAAATACAGCGTTTCGCGAAAATgtataacgcaata
aattcatcattgattgttgatgggggagagggaaaagttgtagggaaaaa
ataaatagaaagttctggtcgcaaaaatcagttttattgacaattgaatc
atgcttgatggtgagcattgttgtcaataatgtttttgtgtaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNaaaaaatgttttttgaaaatcgggctccgtcacatttt
aggtattgtcattttgcatcagtgtgcaaaatttcataaaaatatctaaa
gtacagctcgagaaattcaagaaatactgtctttccggcgaaaataggtt
gttccggcaatttttaaatagttccggcttcaaaaatcaatttcattgaa
aattgaattatgcttgatggtggacattgctaataataatgtttttgaat
gaaaaaacaaccagttataaggaaaaagtccaatgaaaatctagaaaaac
tgTGATTTCCGGGCAAActggcattttccgccggaaaaaaattgttctca
aaaatcagacttggccatgttttgggcattgttaatacgcacctttgagc
aaaaaaaacaaaaaaactaattataaaatctcgagaaaagctggtaacag
acgaacggacggacggatggacggacgaacagacaacggttaattcatag
gacctccaccggtaggtccaaaaagcgtTCAAATTGGGAACAAACTGTCG
TCACTGTAAACACAAACCTTACTGTTACCTCCGTTTTCCATTTTGTCTTT
AATTTAGGGGCTCTATATTAAATCATTAAAGTTGGATTATTGCTTGATCT
TGTACTACCCTACACAAAATGTTAAAACGTTACCCATCTAATCTTCTAAG
GTCcataacgttcaaataacgttgtGTAAAAGACGTTTACTCAACGGGTC
ATTACCAAACGTATTGGTCATCACCAATAAAAATAGCTTTTGTCAAGACC
TGAAAAGCTCTCGttaatatatttattttaattgaatagaaaatcaaatc
aacaaaagtgaaaagtaaaattttcctcATTTTAACCCGTTAGGTTCTGC
GGTctttttttctaatattttaagAAGTTcgcgctagttcaaactttaaa
ggcttatatctccggatctagaaggagttagctGCGCCGATCTGACTGAA
TGACAGAAAGAtacccagtggtaaaacttcaaatcaattcgtagaggaca
gaatcaagtgaagcggggccaaatttggaggtttttgGATTACCCATTGa
acaaaaatggtcaaaaaacggtcaatatctcaaaaaagttttttctagcc
atttttatgactttttggcttaaaatctctttggaaagactcacttttaa
TCTTTTTTGCTTTACCATGAAGCACAATACCATTCCTACGAGTTAAatca
aaaatgacgatttctaactcaaaccgATATAcccgacattggcacttaaa
gggaaATCATTATTTAGGATCGCCTACATTTTATcccaacattttaaaaa
tatcaaatttcaaaagaagcCACAATCAATTAAGTTTATAAGCTCTTAAA
ATAAAGTTcaagaaaattataattttttgtgaTAGTTTGTATAATAGGTC
ACTAAAAAATAATCTGTTAATAAACATCTTGTTCTCATTTGATAAAAAAC
CATTAACTTTTTGGGGTATTTGTTCCGGAAGGGTTTGCATCGCCGGCAAT
GCATTGAACATTTTAATGCAACAATTCAAATTGTTTGTTGGACGAAATAT
TGGATGAAAGTCACGtggaaaaatttcgaaaaagttgcatgaaaagtcat
ttgcacAAAACGTTAAACATTTTCATCCGACATGATTACGCAAATGCGTC
CAAAATTGAAACCAACgtaaaattgacgtcaatttcataaaaatgttgga
tgaaatgtttggcGGTGATCAaaacttcatccaacatttcttattaaaaa
atgttggatcCAATGTTGGATGCATTTGCGCCGTACTTATATATGCTCTA
TGGTGGGGCTTTCGAGGATACAAAATATCATAAgggagcggtcattaagt
atagCATATACCGGGGTGGAAGGGATTTTTTTGGCAGACTTCTTATTTTC
ATATCCTACCAAAAGTtctcaaataaatttcataccCTACCAAAAATTAG
ATGAAAATTTTCGTACCCTACCCCTTACCAGATGGCAGCTTTATGACACT
TTAAAATTTCTCAGTATTCAGGGTTTGCAAGAATAAAATGGAgttttaaa
attgacaaaattgaaatttttgttaaaataagattcagctaaaaatattt
tcgtacCCTTCCCAAAGCCCTCAAGTTTTTTTCATACCCTACCCAAAAGA
GGGGAAAAAATTCATACCCTACCCAAATCCCTTCCACCCGGGTATATGtt
atacttaatgaccgctcccTAATACCGGTATAATATTTTCACAACATACC
AGCACACCGGccaaaaatttctaaatacCGTTCAAGAATGTTCAGACGCG
TACAAGAACACCGCAAGTTCAGCTTATCAATACTGGAATACCAGTCATTT
TTTCGTTTAATACTGGACTATGTTTTCTTTAGCCTCCTGATGAAAAGTGG
GTTAAGACTGCAATGGATATTGATTTCATTCTGCTTAATACTCAGCAAAT
AATTAAACGAATAATTTTTGGTTCAGaattcgaaaataaaaaaaatcatt
atacCATTAAAAGAATGACAATACGACTAGGTTTGGTTACGACACGGCCA
CGTCTTTCACCACGTTGTTGATCTTAATACCTTGGAAACTTATACTACCA
CGAGTTTATGGTTTACCAATGCCACGAGTCCTTTATTTGTATAACTAATA
TGTTTGCTGTATTTTCATTGGTCCAGAGTTATGTCAGCTCCATTTGATGA
ACACATAAATTTAAAGGTCTAAACACCATTTTACAATCACGACTTTAATC
AAGTTCAAGATTACTTctcaagaagaaaattaattgtTTTTCAGCTGCCG
ATCTAAGGtaaatttctaatatttttttctaattttgatatgtGATTGAT
GTATGATTTACTAATGCTAATTAAGTCTTTGCACATTAGACGGCTTCAAC
GTTGtgatccggggggggggggactagggcaagatgggttacggggaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccccccg
gggttgtCTACAGACGTCCgtagaattaagaaaatttatacatctactta
ttttgtagattttctagTGACACTGGCctgacaaatttcataaagaacta
CAAACTTCGCCAAGAAAGTTTATGTTTTCgataaatatattttctttata
cttgcgaaattaaatgtcgtgaatttcgcaaTTTTTTAACCCTCGTCTCA
TCCCGCAAAGATTTTTACGACTTAATCATATTAAGGTGGACTATATTATA
TGTTTACTAAGGTAAATTATTCACCGATGACGAATTCTACGATGATGGTT
CacccaaaaaaatacaaaagatgAGTGTATTGTTAAagctaatttttttc
tcttttcttcacAGGAAAAGATGAAGCTCGCAATCGTTTTGATGTTGACA
TTCTGTTTGTTCTTACAAACTCAAGCCAGGAAAATTGATGACGAGAAATA
TTACGAGAAAATGGAAAACGACCCGGCTCGCTGTGTTTACAAGGGAGGTT
TTTGCAATCCATTCGTTAGATGCTGTGCACAAAAACATCAAATGCTTTTT
TGCATTGGTTTCAGATGTCGAACAATTGgcaaaaaatttgtattttaaac
caagtattttaattttctttaacgctagcattttcattttcatggaaGAG
AAAATCGTATTATTGTATCTTATGAGAAAATATTTCCATCAGgtacatga
ttttttataagagctaATAAATGTTGGTTTGGATTCcttattttcagtga
ttttGAGGCGTACAGTTTAAGTGTTTAAATTGTTAACTTATTCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00056900TCONS_00056900Clytia hemisphaericatranscript
TCONS_00056901TCONS_00056901Clytia hemisphaericatranscript
TCONS_00056902TCONS_00056902Clytia hemisphaericatranscript
TCONS_00056903TCONS_00056903Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1274395..1282738 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.8	1.32	1.03	0.22	1.07	0.43	81.04	87.2	628.2	167.78	623.82	1070.19	109.47	119.73	272.59	218.81	19	14.91	18.52	17.14	1.45	1.35	1.41	0.84	1.07	0.48	1.16	0.76	0.98	0.92