XLOC_036951 (gene) - C. hemisphaerica

Overview
NameXLOC_036951
Unique NameXLOC_036951
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_312:1041..10965+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_036951 ID=XLOC_036951|Name=XLOC_036951|organism=Clytia hemisphaerica|type=gene|length=9925bp|location=Sequence derived from alignment at scaffold_312:1041..10965+ (Clytia hemisphaerica)
CTACATCGTGAAGACAAAGAAGAAGTAAGGTATGTGTTATTATATACGAT
TTAACAAGCATAAAAAGACGCAATCATTCTTTCGACAAATCAGCCTTCAG
GAATAAAATCCAGCCGAATTGATTTATCCGATCAGCTAGTACGTGGTTTC
GGCCGAAATTGCATTCTGGTCCGTAAAATACCAATCAGACAGTTGGCCGA
ACCAAAATTTTGCTTATCATCTCCTCATCTTCAATGATCAATATCTTAAA
TATATAAGATCGAAGAAAACTTGCGGCAGTATTTCCAAGAGCGATTGTAT
CACGTCCATCcgtaaaaaatattgttgcagGTGGCTCTGGTTACGAGATT
Gagataactcggaaagctaaaggaagcaaaattttccgagttaaaaatga
aaaataactcggaaagttaaaggaagcaaaatttTCCGAGTTTAAAAAAA
CGATGAATAACTTgaaaagctaaaggaagcaaaataaactgAGTTAagaa
atgacgtcactaaattccgaaaatgacgtcataactcgagataactcgtt
tttttcgtaactcggaaaaaataactcgggaatttcgGGATTCGTGCCCG
AACGGCTAACCAGTCTCAGTAAATTCATCAAAACGGACTTTCATTTTTAG
AGTTAATACAGATGGGCAATTTGAAGAACTCCCAGAACCCGAAGAGAAGA
TGTAAGTAAAGAATGTTTTGTCTTATGCTatcgggtgtgccacaaaaaag
ttaccctctttgatttgatattgcaggcagtagcagaaagatttttcaaa
gattattttgaggaaagcctaacttaaaatttggtgtattactttttaat
tttacttcattagttcaaaaattatgttcaaaaacctaaaatgttgattt
tagaaaatgtcaaaaaaggctaaaaacaagGGTATCAATTTATGAGAGAA
ACGTTTTTACCAAAACCTTAAAGCACAATGTCTTGCTCCTTGTAACACTC
TCTATGCTTtcttttctattgtctttttttacttctgTTTTTCCCTTGCG
CATAAACAAGATGCCTCCGAATGTTTCAAAcctcacaaaattttcaacat
cttccCAAGAGTTTCCAAAGGTTTTTATGTGTGTGCATCATCGTTGAGAA
AGGTGGAGAAggtgaaagttttgagaaaaatgcttCGTTTGAACCGTTGC
AGCTCATCTCGATTCACAGATGATGGAATGTATTTACAGTAATGCATTAT
CTTGTGAACAAGTGCTTTTTTCATAATGGAAATACATTTATTACAATCAA
TTTAATACTCaggtttttcacctttttctgtcattttttaaaattgatat
tttaggtttttgaacatgACTTTTGAactaatgaagtaaaattaaaaagt
gataCACctaattttaagttaggctttcctctaAATGATTCCGAAATAAT
CTTTGAAAGATCTCTTTTCTATTGCctgcaatatcaaatcaaagcgggta
acttatttgtggcacacccggtaagTAATTTGGGTTGGGTTGATTTAGTC
GTCAAACACTATTTTCGTTGCAAAATGGTACCATTATGGATCAGTCACAT
TCCTAAGCCAAACAGGTTGCGCTGTGTTGGCTTCACCACAAGTAAAGTAA
GACTTCTATTACAACTACTGTAACTATAGAAATCCTTCTCTTGGGCCAAA
GTATTACCCAATGAAGCTTTTCAGTTACTGAAAATACTAATCGCTGtgac
tgattgattgattgattgattgattgattcattgattcattgattgattg
attgattgattgattgattaaacCATTAATCCATTGAAAAAGGTTCATTA
ACTTTCAAGCTCTGATTTCAAAATGTATAATGGGATGTAATTGAGCAGTG
TATATTCGCGGTACGAGACTGCAAAGTCACAGTTTTTCAATTAATTCTCA
TGCTCAGCACCAAAGTTTTTGGccaaattctttttcattttcctacaGTT
TCTCCATATTTTTTTGGTGAGAATTCGCGGGAACGACATAACGACGGCAC
ACACCTTATCTTATATTCCGATGGTGGTTGATCCGCCCACGCTTAAGCTT
tataaaggagcgggccaattttcCATCAGAAAGGATtaatagtcggcctt
tgatgtgttgcatccccagtcgggttcaaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctatttgtg
ttttgaatgattttttaatggtcacgttcacgtagatatcaattatgtat
gtgttaaatgcataaccaggtaggtccataaaagtatcacttgttcgtTT
GCAATTTATCTTTCAGTCAAAGTACGAAAGAGACATATGATCGTTTCGAT
AAATTTGAAAAGGCAGAAAAGAAGCAACCAACTTCGCCAACCAAACAAAG
TTCGCCCTCCAAAAGAACTAATCCTGTCACTAAAACTATGGAAAATAAAG
ACCTTGAAATGCTTGCAAGTTTAGAAAAAGCAAAGACTTTCTTGAACGAA
TGGATTGAAGGCTACACAATAGGAGATTCCGCTACAAAACGTTCTAATAC
caattcaaccaatcaaattaatACAAATCAGCCACGTGATGAGAAAGAAT
TCCAAGCAAAAGTGATGAATTTCTTATCCAAGAATCCTGATTGGTCGAAC
GAAGCAACTTTGTCTGAAAACtttcaagagaaaatgaaagtgaagagcAA
TAACCAAGTAGGTTTTATCTTTTTGTCTCTTTTGGAGCTGAGctctactt
taggcgtacaaactttcgcgaccagaaactttcgcgatttacGCTAATGT
TGGcccttttctttgaaaattcttaacagggcaattcacgaaagtttatg
ctcgcgaaaaaatctcagaaaaattagaattctataaattaatttttctt
atcTTCTGATCCCTTTTTAACAATCATCTATATcggatttaaggaatatt
ttcacttttaaagcaatttttattcaaaaattctcatttttatccaacga
tttgcgaaagtttatgcttgcgaaaaatgttttgcgatttttttacctcg
cgaaagtttctgcttgcgaaagtttgtacgcctaaagtactctTTGGATT
TATTACTTTGGCGTACTTCCTATTAGAAAGAGCCTggataatatttttca
ataagtTTTAAATTACATTTGGGGTATTAGAGCCAGCCGAAACACGCTTT
GCAAATAGAGTCCTAAAACACACGACATATTAAGTAGTTCAACTCTTAAA
CAAAATCTGATGTAAAAATGTCTCTTTGGCAAATCAAAATTGATACAAGA
CAAAAGAGgaaattttcagatttctttaaagatctttGTTTGAGTGTGAT
TACATTTCAATTATTAGGAAAAACCATACATGCCTCCTGTCGATTGGAAA
TCACAAGCTCTACTCAGGAAGAGAATTGTCAAAGAAAAGGTGGTTTCTAG
GTAATTTCTTCATTAATTATACGGCTGATTACACTTAGCTTAGAAATATA
AGGGAGGAGCGGGGTGATTAATCCGTAATAGCCCTGCTGTAATCACCCCG
TGAANccttattggtatatattttcgcatgttacaaattttccaaatttt
cgcgaatcgcgaaattttttcgaaaaaacgtgtttcgcgtatattaaatt
tcgcgattgccgacttctggaaaattttcgcgtgtattaaatttcacgat
tcactaaactaggtattttcagaaagtgggaatataaagcaagaaaaaga
ctgatttgcttgaaacacaacgtttttgatgtaaaaatactaacaaaata
ctaagaaaaaatttttcgcgtgtatttaatttcgcgattttgtaattttg
aaaaNaaaatactaacaaaatactaagaaaaaatttttcgcgtgtattta
atttcgcgattttttaattttgaaaaatttaaacagtattaaatttcgcg
aaaattgaccaaaaaactcgcgaaactaagtacccgcgaaaatttgtaac
acgcgaaaatatataccaataaggtatatgGCTGATTACACTTAGCTTAG
AAATATAAGGGAGGAGCGGGGTGATTAATCCGTAATAGCCCTGCTGTAAT
CACCCCGTGAAGAAAAACCTTAcgcctttttttcaaaaaactaatCGGTT
TCATATCATAGTTGTGTAATCCGNTACgcctttttttcaaaacactAATC
GGTTTCATATCATAGTTGTGTAATCCGACTAGgttcgggctattttgaaa
tgttttcaataaaCCTCGGGACTATTATTCCCAAATAGCCCTCCAAACCA
TCCTATTACTAGTTAGtgcataggccatttcacagtcgcaaagcgtaatg
ggtaatcaggaccactgcgcgctaataacgacttattattggtccaaagt
tttgaaaaaaattgaagatttttgcgtctagccaacgggaagccgtaatg
gaggcgcaatcagtcctgattacccatgatccatttcgaccgtgaaatgg
cctatattAAATCATTGAACTCGTTCCATCTTTGATATGCACCACTGTAT
AGAATTGACTTCACCAATTTATGTAATTAGTCTTTGAACCCAATACGTTA
CTTGCAGCAATTCAGGTGTCGTAAAAGTGACGCAATGACAGAAGATATTA
CGGGATCATTGAAACTCtggattttacattttttagcTCGCtactatttt
cttttcttttacccCTCTCCAGGATTTTGCAGTTCGGTTGATAGTCTATA
CCACTGTCTCTATTTCAGTTTGGAGAAATTACAAGACATTCTCGAGTTGT
CAAAGTCTGATTTGGTGCAACTTGATTTCTTCAGCTTTCTGGATAAACTA
AAGTGAGTTTGCAACTTTTCTATAGATTTATTTTCATCTGTTTCTAATCC
CACTAAATCATTTGAGCCAAAACTTTAAGCAATCAGTCCGTCGCAGGTCT
TCAACAATGGCATGTCTTCACTTGCGCTCCGTAGTAGTCTTTTGGAACTA
TCGCAGCATCGATCACGCATTCAATCTGCAGGTATTTGGCCGTTAacgta
ggtcttcggccgctggaaaACCGCGACTTAAAGTCTTGAAGGTCTTCGGC
CGTTggtgtaggtcttcggccgttgacggaaaaaaaaattgctcCGTCAG
AGTATAGATTATAGCCTGTATTACCCCgatttctgaattttgaaaaacgt
ctCTTCTCCACGAAGAAAAGTTTGATACAAGCTTTTGACTTTTGGTCTTA
TTATCATTTAGCCTTATTGGTTGACTCAAATCCGCGAATCTGGCCCGCTC
TCCCTGAAATTTTATTTGTATCACGGATTTTGCatgcaccttttcgaccg
tagccgccaattgccgcgcgggcatttttttgtccgttttatcaccctaa
aaccgtcccagtcttttttcgcacctatagacaatagaaaaaggtgtaaa
aaaggattgggtcgagtttagggtggtaaaacgggcAAAAAATACCTACG
CAGCTACgatcaaaaatttatttgtgCAATGGATAAAGCTTTATTTATTG
GTTTTAATTATAGATACACACGAgaaaatattgttttgaaaacgaaagag
tGGATCATTGTCTCTATTGGTTTATTACTTATGTAAGTAAAAGTTAatat
ttttatgagaacataaggctttgagacaaaaaatatttaagtcTATCTTA
AATGTACGTGGACACTTTACTTTTCTAACAATTTCTCGGTATGCATTTTT
GTACTATATTAAATaaacaccgttggaaagatatcacCAAGGAGAACGAT
CAAAAGATTAAAACAATTTGAACTAGTAGAAAAATCTTCttattggacct
accgggaggtcctttaatttgaccgttgtccgttcgtctgttacaagctt
ttctcgggattggctcattagtttttttttattttttgcacaatgataca
aaatagcaatgcctgaaaagtgacggagcccgatttttgaaaaaaaattt
tggggggcaaatttgggccaaaaactacctaaaaataaggttttttggac
ttggtgcaaaattgcctcattagtttttcctgatttttggcagaaagata
gagtgcaaggtaccctaaaatgtggctgaagtaatttttctcgcaaaatt
ttttttcgtcgtcaaatacggattttcgcaaatttgggccaaaagctacc
taaaaataaggtttttttgacttggtgcaaaattgcttcattagtttttc
ctgatttttggcagaaagatagagtgcaaggtatcctaaaatgtggctga
agtaatttttctcgcaaaattttttttcgtcgtcaaatacggattttcgc
aaatttgggccaaaagctacctaaaaataaggtttttttgacttggtgca
aaattgcttcattagttttttctgatttttggcagaaagatagagtgcaa
ggtaccctaaaatgtggctgaagtaatttttctcggaaaattttttttcg
tcgtcaaatacggattttcgcaaatttggggaaattcccttttaccattt
tcctgttagcagcttttctcgggattggctcattagtttttttttaattt
tttgcacaatgatacaaattaataatgcctaaaaagtgacggagcccgat
ttttgaaaaaaaaaattggggggcaaatttgggccaaaaactacctaaaa
ataaggttttttggacttggtgcaaaattgcttcattagtttttcctgat
ttttggcagaaagatagagtgcaaggtaccctaaaatgtggctgaagtga
TTTTTCTcgggaaatttttttccgtcgtaaaatacggattttcgcaaatt
tgggccaaaatgtgcctaaaaatggggttttctggactttgtgtgaaatt
gcttcattagctttttcaaattttttggacaaagataaaaggcaaggttc
tctaaaacaCGACTGAAGCctttttttccggaaaattttctttggccAAA
AAActtggattttcttatttggggaaattcccttatgtcatttttaggga
aaaagaacatttctcgcgattggatcgatattcttttctgattttttgca
ctttgatgtaaaatggtaatcttTAAAACTGAtgaagcctgattttcaaa
aaataattttttggggcaaattttggccaaaatgtgcctaaaaatggggt
tttctggactttgtgtgaaattgcttcattagttttttcaaattttttgg
actAAGATGAAAGGCAAGTATCTCTAAAACGTAACTCAAGCTGTTTTttc
cggaaaaatttttttggctgtaataatcggattttcttatttggggaaac
tcccttttgtcatatttagggaaaatgagcggAAAAGTGCCTatattcaa
gctgctcattacactttcttactctcttgctatttgtcctatttttatct
gattttggtcaccaggtaggtccgttcagcatgttgcttgttttcatatt
tttatctttacttttcaatttttcaagaatcttttatctttatattatat
actcatcgaaatgtttaaaaaaagtaaagtgtccacatacttttgagata
GACTTTAGAACATAATGCTTTTAGATATCcaaatcgcacgatgggttatt
ttttcttatttggcgcatcctgtagagagcaattaatcattaatcacact
cttcgatgccgcgccaatgtttacaaaattgattttaatgttttttctta
catttttttttcatcgaacgttttaattgcattcgagattcattttgaga
gaaagaaaatctataaacaacgataaaagaaaaacatagagAGAAGCAAA
AAATACATAGAGAGAAGCAAAAAAATACGACTTTCAGTggaatttacttt
cctaacggggaaaaagtagtgcgattagctcgtaatcacataataactcg
tacaattcgaaaattgcactcgttatcatgtgattaaattaaaccaataa
aaacattttaggcctaaatttaaaaaaaggctTAGAACATTCAAACTTTG
AATACTCTTCTTCAAACTGAATACCTTTAGTAATGGCACATATGGACTTG
AGAAATCAGGCTCGTCTCAATTTATGTTTCGGAAATTGGAAACGGAACAA
ACAGAGTGATGAGGAAGTATTAATAGCGatttgtttcttaaaatataTTG
CACTGCTAAATgtattctgatttttttttgaagcgaAGAGCAGAAAAAAG
TTTTCTCTGACGTTTGAGCTTTCGAGACTGGAAAGCATTCTACTTTTTTG
ACAATTTATTCTCCTTTATTTTAAGCTATTCTCAAGGATGTCCAgaaatt
tccaaatcttttgatAAGAATGTGACTCATTTGAAACGATTCTTAACAGA
CAAGTCTCTACCGGACcttcaatcaatcaaaaacatATGTCCTTCCATAG
CTACTAAAAAGACTGAGAGTGACAATATTGAGGAGAATATTATTAACGTT
AGCGAGGATATTGATTCCGATGATGATAGTATCTCAGATGAAGATGCTTA
TGGAGATAATATCTTTCCTCCAGACTCGAACACAGCAACTACGAATTATG
AATGTGACTTATCGACTATTTGTGAATATGGAGGTGAATTTGAAGAATTG
GATTAATTATGATAACGATTAGAGGCTGAGCACATCCCcgaaattcattt
tgatttacagggtgtccggaaaaaaaagtatcgagttcgaacatgattct
gagtagaaggttgttgcgtgtgtttaaagGGAcgttaaagtagtaaaatg
taaacattgcgtgaaccatgtgtcattaaaaagaacaattaaaatcacgt
gcccaaaacaaacttgtaaaacaattgaacaatcaaaattagccatattt
tattttttattttgacatatgacatttgttttgattttgtatccactgca
tacagtttgtttacaaatttcgcaagtactgttatgtccctttaacaaaa
tgtaagaaaatatatacaaacGGCAACATAATCAgacacaataattgttt
ttacaacagtcattatgattatgataaaaaagaattaactttctttgcaa
ttttcatgacgttagagtaattgag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00058642TCONS_00058642Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00058642-proteinTCONS_00058642-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:1041..10965 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.08	6.08	3.15	2.28	4.36	3.15	5.4	5.31	5.87	4.39	4.31	4.62	4.29	4.88	5.25	5.99	5.02	7.45	3.1	3.92	5.8	5.48	6.73	6.71	7.4	8.02	3.66	2.95	4.42	4.87