XLOC_037897 (gene) - C. hemisphaerica

Overview
NameXLOC_037897
Unique NameXLOC_037897
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_339:233173..238443+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037897 ID=XLOC_037897|Name=XLOC_037897|organism=Clytia hemisphaerica|type=gene|length=5271bp|location=Sequence derived from alignment at scaffold_339:233173..238443+ (Clytia hemisphaerica)
CAGGTGTCTCATAAATGGTgggaggggttggaaaaatcttcaaattttaa caaaCGTCTAAataaccccaaaataaggtaattaaAGATGTCAAAATGTC GTGTATCCTAAGAAAACCTCGCCCACAAAATACTTACTAAAGAAATAGCC GGCTACCGAAGGTTTCCTTCTTGCAGGTGGATTCGTTGTTGCTTCAAGTA CTGATTTCTCgcattgtttttcaattttagcgaGTGCGTCAAAAATGAAA GAGTGTGCTTGGTCTAGACTCATTCTTTTATTGTAATCATAACAAAGCAG ACTTTTGATTACATTGTTTGCAATATCTTGTTCTATTGTCTCTTTCAATC CCTCGAAACTTGGTTCAATGTTTTTCTCAGAACGATGCATAGCAAGTCCA AGGCCAACTTCTTTCCCATGATGCTCCACAAATGCACCATAATAATAAGA TTCACCTTGAtaagttaaatatttccttgTCAAAATAGCATAGAATATCA CCCCAAGCGAGAAAATGTCAGCCTTTTCTGTATATTTTCGATCAAAGACT TCAGGAGCAATCCAATACATGGTACCTGCATATTTGTCCATAAACATGTC TTCGTATTCTGAAAGGTAatcttcgttatttttcaaATCTCGCGTTAAAA ACGGTCGAGCAAGTccaaaatcagccatttttgcCTGCCCTCTATTACCA AGCAGCACATTTTCAGGTTTGAAGTTTCTGTGAACAAAATTATTGTTATG GAGGTAAGTCATTGCTTCCAGTAATTGTGACATCCAGTCAAACTTTTGTT TCATATTGACAGGGTCACGTAATCGGTTATTCAAGTTTCCTCCAGGACAA AACTCCATAACTAGTAATGTAGATGTACTTTCAAAATCGAAAGCATACAA TTGAACAATATGAGGGTGTTTTAAGCAGGACATGGTATATAGCAAATTAC CAACAACATCCTGATAAAGTTTATCATTCGAGGCGCTATTGTTTTTTGTA TTTAAATAATGTTCAGGGGTCATTTTCCTTAAAGCGAAAACATGTTTTCT TGCATCCTCCACTTTGTAAACATCTCCAAATGCACCCTTGTCGAGTTTAC TGACGATGGTCAATTCCTGAAAACATCCACTTTTGCAGTCCAAGATTTGG AAAGACATTTTTTAATTGTTCCAATTTGATTATGAGGTCCATTTAACTCA TTCATAATACATCCATAAAttcatatttgtttttttattacttATTCAAT CTGAAAGTGATAAGAGaaactttattagaaaaacGATCAAGAATACGAAT TTGTATTGACAAAATATGGGGAAcagaataagaaaaaaagtacaGCAAAG TTTAGCTGAGAGTCTGGGCCTTCAtcgtttatataaaaaaatttcgacGT GTGTATGTACCGGACTAAACAGAAAAACAGAGAAAAGCCAGTACTAGGCC GAGTATTTATGAAAATACAGGATCCTAgcgcagaattctattggctatta aacaattgttgaaatcacgtgatataattgttttgattggaaatgCGCAA TTTTGAGTGGCTAACAAATTCGAAATGGAACATATAAATACCATAATACT CTCACTGAGTAGCTTCTCATGGGATATTTATTTGGATGGTGTAAGTTTTG GTTAGAGAGCATGAATCTCCAGACTAGGCCAAGTCATTTAAATTGATTTC AATATTCAGTTATCTCGTATAAAGTAAGCATAAGACTGAAAAAAATAATG GTCAGCTATCTGGTAATAATTTAATCtataaaaattacaattatAAAAAG CGttatgaaaaatatatcaattGTAAAAAAATTGCGTACTAAGGTACGGA AGCCCATTAGTGCCATTTAGATTATcctttaattttttaacgacGAAACT AAAAAAGATGACgacgaaactgaaaaaaaatgacgacgaaactaaaaaat tgacgacgaaaatgaaaaattgacgacgaaaatgaaaaaaaattgttact tCGTCGAACAAATTGCTTCTTGTGAATGAGATGCTGGCGATGATGAACCA GAATAAGGATGTGATGGTGGAGATTTTTGGAACCACCGGTGTCATTGGAA TCATTGGAACTAattaatgatgaaatcaatagtgcaaatgatgaaatcaa tggttgGTTCTATCACCCACACAATGGATTCCATCATCTCATCATGCTAC AGCTTTGATGgtgcaaatgatggaatcaaaggtgcaaatgatggaatcaa tggtgcaaatgatggaatcaatggtgcaaatgatggaatcaatagtgcaa atgatggaatcaatggtgcaaatgatggaatcaatggagcAGATTATGGA ATAAAAGCTGTAGCATGATGAGATGATGGAATCCATTGTGCGGGTGAAAG AATcaaccattgatttcatcatttgcACTattcatttcatcattgattag tTCAAATGATTCCATTGACACCGGTGATTCCAAAAATCTTCTGATTCATC ATTGCCAGCATCTTATTCACGGGCTTCTTCACCAGGATTGCattaaggac atgttttttttgactgtaccaaaatcaggttttcgaaaatcgtgaaaatc actttattttaattatttcgtcattcgcatgatgaattttcccaaaattt tgatatgtattgatatttgggaagggctttaaaatgagctatttgaaatc tcaaaattcggagtatttcaggattaattaatcataGAGTGTTTTGGATC ATATCTCACTCCATGACTCATTATTCGGTCCTGAGGAGGTTTCTATGCAT TCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNgtaatttttttaaaggccggagtgagttat gatcaaaacaaacaaaggacttttttaatcatttttcactcattttaaca ATTCCCGTTTTCTTTAGTTCATTCCTTTcttatcaaccaaacaaaaatct caaatcacttccccgatagatagacttgtcaggaaaatatatacgattag aattagcacctagatttcaaaaatgatcaatttgatcccNCAATATTTTA AATTATCtatgtagcaagatggtggaCTAAGGTGTAAAAGTACAGACGAA AGATTCCACAAAAAATTGGCTCcatcaaattcaacaatttatcatttaaa aagTAAAGATGACGAAAAACAACTAAGCAATTTTCAAGCGGTTGGTTCAG AGCATCAATGATAAAGTTAGGAGGGCTTTCTTACTGGAATTCACGAAGAG AAGCTGAATACAAACAAACGAAAGAAGTAAAACTAAAGAAACACATTTAT CAGCCTTCCATTTTGGCTTCTATGAAAGCCCTTCAAATTGTTTAATCTGA TATGGTCCACAACAAATAAAAATGGAGCCCTTAACTTACATAGtacttat atatttttaataagCAACCCCAATTTTCGGCTCAAGGCTAAGGTTGCTTA GAATTCTATctcaatttcaaagaaattagCTTTGACCATCCATTATATTA TACCATAATTATACCGTTTGTCATGGTTAGTTGATCTAAATATAGTTTTT ACTTCAGGAGATAGTAAAGAAATTTGCTGATTTCAGGGCTCGAGGCGTAT AATGTGTGTGACTCGAAAGAATTGTgtaatttaaaagaaatttcattttt tataaataagaaaataaagataacACAAAATTCTCACTGAACCAAATATT TCTTCTCCTCATTCCTTTCATCCTCGTTTTTCGttcctgaaaaagaaaat caaattctttATAAATAGGAAGGAAGTAGGGTAAGTAGGTAGGTATTTCA CACATAGAAATTGTAAAGGTAAAGAATCGAAGTTTTCGATGAAGAGATtt agaagtaaaaaaaactctGCAAAAAGGTCTGAAAATCGaccagatttcaa aaaatgtttgctGTTCAACTTGTCTTTATAACAAATCTCACCAAGAAAGG TACAACAGCAGGATTTTTTGTCAGCCTGCCCATCTTGGAAAGGAGCTTCA GTATACAACGAAGAGGTTCTTGAATGAGAAGATTTCATGGATATGGCATC TTCTTGTAAATAGTGCTTTGCATCTTCAAGAACTTTCTGCGCTCGGTTAA GACTTATTCTTTCTTCTTCACGAAAACATAACATTTCAGTCACCATGCCA ACAACCAACTTCTCCGCCTCACTTTTCAATCCGTCAAAGGAAGGCAGGCG TGTTTTCTCAGAACGATGCATAGCAAGACCAAGGCCAACTTCTTTCCCAC GATGATTCACAAATGCACCATAATAAGATTCACCTTGAtaagttaaatat ttccttgTCAAAATAGCATAGAATATCACCCCAAGCGAGAAAATGTCAGC CTTTTCTGTATATTTTCGATCAAAGACTTCAGGAGCGATCCAATACATGG TACCTGCATATTTATCCATAAATTTTTCTTCGTACTCTGAAAGGCtatct tcgttattttttaaatctcgCGTTAAAAAGGCTCTGGAGATACCAAAATC TGCCAGCTTCATCTGCCCTTTATCTCCAAGCAGTACGTTTTCAGGTTTGA GGTCTCGATGAACAAAATTATTGTAATGGAGGTAAGCCATTGCTTCCAAT AATTGTGACATCCAGTCAAACTTTTGTTTCATATTGACAGGGTCACGTAA TCGGGTATTCAAGTTTCCGCCAGGACAAAACTCAATTACAAGGAGCGCTG CTATTCCTTCAAAATCGTAAGAATATAATTGCACAATGTTTGGGTGTCTT AAATTTATCatagaaaaaatttcattaccGATAAGATCTTGAATCAATTT AGCTTGTTCATTACTATAGCTTGGCATTCTACACGAAATTCTCTTTAAAG CAAACGCTTTCCCTCTTTCATCTTCAACTTTATAAACATCTCCAAAACTA CCTTTCCCCAGCTTTTGGACAACAACCAAATCTTGAACGGTACCATTTCT ACCatcatgaatttgaaaagtcatCTGTGAATTTCTTTGAGTGCTGCCAT AAGAAGATGATGTACCCTGGCCATTCACAAGGCTTTGTCTTGCACTGGCC ATATCATTAGGTATATCCTGtgtatcttttttctttttaggcattcatct actagaagaaaaaaaatgggt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00060245TCONS_00060245Clytia hemisphaericatranscript
TCONS_00060246TCONS_00060246Clytia hemisphaericatranscript
TCONS_00060247TCONS_00060247Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:233173..238443 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.36 8.05 1.51 0.75 9.57 9.54 6.45 8.19 6.61 7.23 7.3 5.35 10.06 8.17 14.69 17.55 8.98 11.3 13.12 12.73 6.32 6.35 18.62 19.84 11.12 11.93 9.78 10.34 14.24 12.96