XLOC_040391 (gene) - C. hemisphaerica

Overview
NameXLOC_040391
Unique NameXLOC_040391
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_414:38647..44093+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040391 ID=XLOC_040391|Name=XLOC_040391|organism=Clytia hemisphaerica|type=gene|length=5447bp|location=Sequence derived from alignment at scaffold_414:38647..44093+ (Clytia hemisphaerica)
aaaattaCATAACTTAATCAAACATGAAAGACCTCTATACAAGCTGTATT
GACTAAATATTCTCCCATTTCTTTCTATAGGACGATGCAGTGGCTAAACA
TTTTGTAGCTCTCTCCACCAATAAAGATAAAGTGTCAGAGTTTGGTATCG
ACACCAAGAATATGTTCGCTTTCTGGGATGTAAGTTgcaaattcattttt
gaaataccttattggggaaaacttcgtcggggaaaagtgacgaaattttg
gacaagtgacgaaaattttcaccgacgaaaattttccccgacgaagttct
ccccgataaggtattcctTTAGGCAGAGGGTTTTATTTAGGCCCAGCGAC
CGGCGAACGGCAAATTTCGCTGGCCCAAAGCACAAAAAAACAAATCGTCG
ACCTGAAAATTCGCCGGTTCGTCGCGTAAAGTACATATTCGCGCTAATCA
ACACACTGGGCTTGCTAAGAATTTGCTAGCGTATCAAAAGCGAAGCAAAA
CTCCTTTGCAAGACAAAAATTAGAACCCTAGCTAGGCCTGGTTTAAAAGA
ACTCTAACTCATTTTTGTTCCTTTGCTCAAACATAAGATACTGTTTCTGC
CATGAAGGGAACTTTTTAAAGTTCAGTGGGTTGGAGGACGTTATTCACTT
TGGTCAGCCATTGGAATGAGTATCGCCATATATGTCGGTACGCACGTGTT
GTGTTATACTTCAAATACAGTTAAggtgagaccaatttgattagttgttt
tacgggcccgaccgaccctgaaattccaattTGGTCGtaatacattttta
ttttcattgctttactgactgtcaaatttttcaaaaatttggtagttttt
ccaaggttttgagaacgttatgttcaatttttcattttatccatgaattc
gaactttttgtgtctttttattttcttctatttcgcatttttgtcaagat
ataGTAgcttttgctgcctttttagcagattttataggtgaaattctact
attattttcattttttttttcgccgaccgaccgaccctctttttagGTAG
CTTTGCCCGTAAAACAAcgaattaaattggcctcgcctaaaCCCTAATTA
AAACCTCTAATACCATGTTCAGACTTTattgttccgtttcgctccggtat
gattttcgttacggatcgagagtgttcatatcggtttcggaacgtttcga
aGCAAGAAAACGGAGTAGTTCCGTTCCGATTagaaaagtggagcgaaact
gtttctatctgttttgctttgtaacgtcttctttcttaacgtttcaaatt
ttgacgttcaccGTTTCGAAACGGAACAGAACTATAACGCCTGAACATGG
TCTAGAGACGTGTTGTGTGTGCCAGACAAGCTTTTTAGAGAGAGAAagtg
gtattgacctttttattcTAACACGACTCTTCgttttttcttgtcttttt
tatatcctttcctcctctGGCCCCCACTGTAAGGGTCATTTTTTGGCCAA
ACTTTCTCTGCATGCACTGTAAAGGTTCGATTTCGGAAGCCAAATTTTCC
GCCGAACAGTTGTTttcagaccccccccccccccccNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTG
TAAAGAACTAAGAAACAGAACAGTTCTCAGATAGtgtcccaaaaacttaa
aataaaaaactactcttgtctggcacacacaacaagttggccacacctca
ccacctttgctaccatttttgtttacattttttttgctgatgaagcattt
ttaaaagcgcggaatatttccgaccattaaattttgaaatttttagagtt
ttggatatttccgaccatcaaatgatatttctgaccatcaaatgatattt
ccgaccatcaaaagatatttccgaccatcaaatgatatttccgaccatta
cgctatgatatttccgaccattaaattttcaaaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCTCGCCATCACCCTCGCCACttt
aaccgtagccgtagagaattccagatacataatctcgctaatgaacgcgc
acggggaacacaaatttgcacgagtaaaggaaatttcgagatatAGAGCT
AGGTTTATAGGGCATTGTTGAATGAGTACcgtaaaacttgttcgagttaa
ggagacattcgagctaAGAGGTTCaagtttaaccctattcgtactagggg
gggggctctttctgttcggaggtcaaactattggtaatagttcatgaaat
aatagagcttttgccgtgaaattttctgtaaattcctaacttttatttag
cttcaaaataaaaaaaaatttgacacctaaatattttcacaccttgagca
tgatgtcatttctgacagtaaggtgtcacaaaaattgacacttttctaat
acaaatttatttttaatgtcaaatatatcatttaaaccgtagtttattga
atatttaggataaaataagcattttaaactcagacaacttttttctaaag
cctttgttagaatacaatagctatttataagaacaaaggaaattttcggt
ttttgctcactttgggcatgatgagtgacgtcatcaaaaaaattttttgt
caaaagttaccttacgtgacaaggatcttgtgtgccaaatttcatcaaaa
aagacccactagatgaaaagttaaggggtggtacaggaaaagcccccccc
tagttctgaaccgcccctaaaagcctagtttgaatagggttaagagaCTC
CGCTGCGAAAGAGCCAGTAATAGCTTTACAGTACACATTGTACATAATTC
TAGACATCTTGAATTCAGTCGTAGTCAAAAAACTTCTTACCTTCATTGCC
AAGAATTGGAGAATTTTCATCATACGTTATTCCATCCTGAATATCAAGTG
ACTTAGGGCTAaggccattgagtttcaagcccgaagggctagaggcgaga
ctcctgaaTGAGAAATGAAAgcacttatttcccattcagaaagcccgcgc
gtagtttttacacaaacgccggattgaaactaaaatttatcgctagattt
caaaaaatgtagtcctcctaAACAAAGCAACTGCTagacaatccgtcgtc
atgattacagcgcgttctatgcgcgttttggatgggaaataagtggcttc
aatttcttttgCCTGAGAAGAGTTAAAGTTTCATCTATAGcacttcgggc
ttgaaactcaatggctaAGACCTACTAAGAGCTAACCATGTATTACGAAT
GTTTTAGGAATGGATGATTTTGAACAACTTTTATCTGGTGCACATTTCAT
GGTAGGACAAAAGATAAAACAATTTTGATCAACTaacttattacacgaat
attactagtcattctAATAAGACGAATTGAACAATTTCccgttaataaaa
accccctcaATTAATAAAAACCAGCCGCTGTTTCCttgaaaaggaagaaa
aattcgtgttaatttcagatcgtgcAACTCTCAAGGTCATTAAATAtttg
cctagtaatatttgtgtaataaagGTACATCTTCAattttgagctttact
aagcaCATTGtgacgtcaatcgatacttTCAGACGTTTTGAGATAGAGAG
CGTTATATCAGTACTTTAACTTATTTTGTTCCTTCGAATATTATGATCTT
CAGTTATCGCTTAAGTTCGTGACATTTTATCTTCAGCTAActgattttca
tattttatgtCCTTTCATCTGTAGGATAACCATTTCCAAACTGTCCCAAT
GGAAGAAAATGTGAGTATTCGTAATATGTGCCGATGTTTAtgacatttta
tttttacactGGTTTTGAAACAAGAATACGTTTTTCCTTTCATGTTTAAA
GCCAATAAGTTTGTTAAGTTCATTCAATTAAAATCGATTGCTTTTGAATA
AACGCCTCCTTCTTTTAAACACCCCCTTGAATAAACGCTCATCCTTAgag
gaaaattttaaataaaagcaCTCCAAAATAAATgccctctttgaaaaaaa
acgcATCCTCTCTAGGAGGAGtctttatttgaaacaagtaaTTGTAAGGT
AGTATACTCACAAcggttaaaaaaagttttactaGCATTCTTTTCGTTCC
AACAGCTACCAGTCATCATGGCGGTGTTGGGAGTATGGTACAACAACTTC
TTTGGCTTACAAACGCACGCTCTTCTTCCTTATGACCAGGTGAGAATTTA
CCTATCTCTCTTGATTCCCTTTTCGcaagtttacaaaaaaaacatatata
ttttactccctatgttgaggaggtgtggacgtccagggtggtctggaaaa
aaaatccagggacTGGTTTTTCGATCGTAAAAAttcagggtggtcagtaa
aacgacttcaaaaatccagggtggtgtaaaaattagaaaaaaaatccagg
cGATCCTTTGGAACCTTTCCcaaaaagacctcctcaacaagGGGTGTCAA
TTTGTTCTGGAATAGCTCAGCCtgtatttgatgtattttctcAGTCTAAC
GACGAAAGCATTCTCTTTATTAAGCTGAAAAGAATTGCTGTATCCCCCCT
CTCCCGATAGAGGGAACAATGATAATCATTTCTTGGGAACTTGCTTTATC
GAAGTGAGTGCCTTTTTCAAACACAAACCATTATCTATTACGTTACGTGC
TGAGTGTTGAGGATTTTAACAcggaaattattttcaaagcgaccgtagtg
cagtggtagagcaccCGGCtgcggtgcgcaaggttgtgggttcgacccct
agccgggtcataccaaagtttccaaaatggtacttgatgcctctctgctt
gatgctcagcaattaagagagggatcaagggtaagtggagcaatccagtg
agaaagagtggcgccctcccctaccttcgagtagatagctatcgaaagag
gctCCTCGGGTGGCCTGTGACTGCGGAGCGAGTAAGCAATTAacgattga
ttttttttctgttttagtaCATGCATCGGTTCTCCGCCTATTTCCAACAG
GTATTTATATGtcgaagaaatttttcaagAGCAGGTGTTAATAATTTATC
ATTTTGGCAtctttttagaataaaaatttattCGGGTGACAGCTCAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064413TCONS_00064413Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064413-proteinTCONS_00064413-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_414supercontigscaffold_414:38647..44093 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.4	17.67	14.61	16.76	10.2	6.96	9.47	14.1	17.97	22.81	21.92	16.56	14.08	16.08	11.04	11.7	27.13	26.22	12.52	12.87	17.7	22.93	15.38	19.19	33.87	25.93	17.69	11.22	17.69	16.78