XLOC_040667 (gene) - C. hemisphaerica

Overview
NameXLOC_040667
Unique NameXLOC_040667
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_425:70581..77820+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040667 ID=XLOC_040667|Name=XLOC_040667|organism=Clytia hemisphaerica|type=gene|length=7240bp|location=Sequence derived from alignment at scaffold_425:70581..77820+ (Clytia hemisphaerica)
CAGATGGAGACCGATTTCTTGGTTGAGGTTCAAAACGAACAAGTCAACGT TGAACTCCAACAAGCCAACATCCGAACCGAATTACAAAGTAGTATCTCCG GTGGTATCTCTGATGGCAAATGGCACACTCTCACATTGACCATTGAAGAT GGAGATAAGTAAGTCTGCATTGAATTACCTCTTATTTGAGTCTGGCTAAC AGAGAcgcgaaagaaaattctttgtacttctttttctctttcttctaTCT GGTAATAACCTTGATGAACAATAAAATGCCTATGAGATTGACCCGGCTGA ATATTGTTCAACATAAGGAGAAGTTTCTCAGAACACCTTCAATGGAGCAC TCTATTGATCTTTTCTTCTCAGGATTTCGTTATACCTTGGAACAGATGAC GGTCTTGTAAAGAGCTCCAAACCTTTACCTAAAGCTGAAGTTACACTTGA AGGAGATATGTTTTTCGGAGGTTTAGAGGATCAGAATAATGGATTCAATG GAAATATCCGACAAGTCNGGAAGGAGATATGTTTTTCGGAGGTTTGCAGG ATCAGAATAATGGATTCAATGGAAACATCCGACAAGTCTACATGTGTGGA AGGTAGGCTGCTTTACATAGcatgttttgttttcatttaaaaggCAAATT GATTTGTTAGGAATGATCTCCTTGGTTTAAATTTTAGGTTCTTTGTTTCT ATATATCTAGTTGGTTGAACTAGAATTATTTAGCTGCATTCATTTCCAAG TCTGCTCAACGTCTTCAaaagattttactttttgtttcCACAGTGAAATG AACCTTGCACAAGACTTGGAGAATCTGAAAGGTGGAACACAAGTTGGAGG AAACATTTTGAACGCCCCTCTTGCTCTCCCACCACGCCCAACCCTGCCGC CACCAACCACCATTCCGCCAACTACAACCACAACCACAACCACAACCACA ACTACGACGACCACTGCTGCTCCTACGACAACAACAACAACTCAACCTCC TATCTTAACCACCACAACTACCACTACTGTTCCACCTACCACCACTCCTG AACCAGACACCACTACTCCTGAAACAGTCACTACCACTCAGGAGCCAGCC ACTAGCACCCCAGAGGCTACCACCACACCTGTGGAAACCACAACAGAATT CATCGTTGGACCAATTGAAGACACAACCACAACAACAGCGTCGACCACCA CCACAACTACAACAACTACCACCACTCCCGAGGTAACCACCACTCCTGAA CCAGCTACCACCACTCCTGAACCAGCTACCACCACTCCTGAACCAGCTAC CACTACCCCTGAACCAGCTACCACTACTCCGGAACCAGCAACCACAACTC CTGAACCAGCCACTACCACTCCAGAACCTGAAACCACTACTCCGGAGCCT ACCACGACTACCACCACGACAACAACTACTACTACTACAACCACCACCAC CACCACCACCACCACCCCAGCTCCTACCACGACTGCAGCTCCTCAATGCT CCAGCAAATTGGTGCCTGTTGCCAATGCTTATGGTTTTGGTTTCGAAGAT GAAAGCTACATCGAGTTTGGAGTGATGAAAGGAAAACTAGATACCAAGTA AGCTTCATCTTCAAAATGTCTGTTTGTCTAGATGAGTGAGAAAATGAAAC ACAAAAAATGTTACTTTTAGTAATTTAAATTAAGGTTTAGTTCAAAACAA TCAAGTGGCGATAGTGGGTTTTACCTTATAGGAATCAATGACAACGCAAA CTCGTTAAAAGAACTCTATGTAAACGTCTCTAGGTTTTCCAGTACGACCC CGTAGTTTTTGCTCATAATAGCAAGGAAAGACTACACTTTTATGAACAGA CTTTAGGTATTTCTAGATTATTCAACACGGCTCTTTTCTTTCATTCNATA GCAAGGAAAGACTACACTTTTATGAACAGATTTTAGGTATTTCTAGATTA TTCAACACGGCTCCTTTCTTTCATTCAACAGGGCGGATTAcgaattctca ttttacacaaTGGAAGAAGAAGGTTTATTGATGTCAGGTTTTATGAAGAG TCCTTACGATTACGAAGCTATCTATTTAGCTGGTGGAAAAGCCCACTACA TTTTCAATGCTGGTGCAGGCTCCTTGACTTTGTCATCCAAGAGTACCGTC AATGATGGAAAATGGCATACTATCAAAGCGACACGTTCTAAGAGAGCTGG TTAGTTTTATACTTTCGATATTttcgagtttatgtatttgcactttttag GACGGCGGAGTGAAAGAAGCGATTTGATATAACACGCAGTTTTGATATGC AAAAATTGAAGAGGGTAAAAGTGCTTTTTTACCGTTGTCTTCATTTGATC CAGAGGACTGTAAAGAGatgaaaaaaaagcttttctgattactcaaagtt caacgatcacttcttttgaaaattctattgtaaaaacgttgattaggtca ttaaacgaaagtccagaaaaggaggctcgccatacaaatcggacggtttc tataTGGTTAGACgataaatatgaaaatttgtttttcctttttcgccgat tactagttcaatctTAAAGAACAAGGAACaatttttttaccaatgtatag caaaagaaattcttaacgcaatgatattaaattgattcttgtaaaactgt cagaaatcagtaaaatcaagatgaagttatattTTTGCTCGAGCTCTAGA TTTCCATACAATTGTGtgtgatgcggttatatcagtggaatcgctaggaa attcttagcaagaagatataggtaccttttctaataggagaggtgtaccc aaaatataagtcCTAAAAGtctgcgcataatcaggcttgaaacaaaagaa ttttgtcacaacacgctaattatgcagatttttcatagcgacaacaaaag aaacctattaactcgacataaactcccttaatggcaagagacctggtata cggcgagccgtttttccattgttttcaagacactgtttttccatctcttt acatttcTCTGTTTGATCAGGATCTAGACTAAATAGAAGCTAACCGTCTT CGTTCCAGAACAacacaaatacataaactcgataTTACCACTGATATTAT ACCACTTACCAATGTTTTGGAAATACTTGATATCGAATAATAATCTGGCT GAAAAGAGTATAAAAATTACAGCATTTACATTTTCCATCATTTCAGGAAC GTTGTACGTTGATGGAGATATTGCAGCTGTCGGTGAATCAAAACCAGGAG CATCTGCTGTCAACAACATTAACAAAGTCTACTTTGGTGGATTGCCCTCC ACTTCGCTTGTCATCCCTAAAACTCCGGTAAGTTCCGAATCGTCAACTTT TAGTTTTAAACATTCATACCAGCAAAATCATTCCAAGATTTCCATTATCC AACGACCTCCATTACATCATATTAGAAGCGTTAAATTGTCTTGTAGGGGT TTCAATCAGTTTGCAATGAATCATAGGAATGAGCTCTAACAATAGCTCCC GGTTCACCAGACATTATAAAAGTCTATTGGACGTGCGGTGTTCCTGGCTT CCCACAATGCATTGGAGCAGTGAAGCAGCTTATGTCTANTGGTATACggc gagccgtttttccattgttttcaagacactgtttttccatctctttacat ttcTCTGTTTGATTAGGATCTAGACTAAATAGAAGCTAACCGTCTTCGTT CCAGAACAacacaaatacataaactcgataTTACCACTGATAATATACCA CTTACCAATGTTTTGGGAATACTTGATATCGAATAATAATCTGGCTGAAA AGAGTATAAAAATTACAGCATTTACATTTTCCATCATTTCAGGAACGTTG TACGTTGATGGAGATATTGCAGCTGTCGGTGAATCAAAACCAGGAGCGTC TGCTGTCAACAACATTAACAAAGTCTACTTTGGTGGATTGCCCTCCACTT CGCTTGTCATCCCTAAAACTCCGGTAAGTTCCGAATCGTCAACTTTTAGT TTTAAACATTCATACCAGCAAAATCATTCCAAGATTTCCATTATCCAACG ACCTCCATTACATCATATTAGAAGCGTTAAATTGTCTTGTAGGGGTTTCA ATCAGTTTGCAATGAATCATAGGAATGAGCTCTAACAATAGCTCCCGGTT CACTAGACATTATAAAAGTCTATTGGACGTGCGGTGTTCCTGGCTTCCCA CAATGCATTGGAGCAGTGAAGTAGCTTATGTCTACCACATTATCGAAATT CGAAAAATCCCTTAACAAGATATATTGGTTGTCAATGTCAATTAACTTTT GTGTCGTGCAAAAATTAACGAATCTCTTTTTTCTTGTCCACAGAAAACAT CTCAAATTCCACTGAAAGGAGGAATGAAGGACTTTAAACTTTTCAACGAA GCTCTGGTCACGCCTGCTGCTAGTGTTGGAACGTCACCAGCGTACAACGG ATTGCCATATGTTAACGCTGTCTCCTTTGGTGCCAATGGTGGATTTGCCC AGAAATTCAGTAAGTTTGAATTTATTTACAATATACTCTTGAAAGTACTC AATATGTTTAGAAACTCAACAATAGGGGATATACTCTTTTTGTCCGCTTA AGACGTTTTCTGTTTTAGACAACAAATCTTTAGAAAACCTCCTCGAAAAT CATTCTTCTATCGCCTTTTAGTTCGATTAATTCATTGTTTTATCCCTCAT AATATCATTTACTCTCCattcttgaatttttgaaataatttgcaTCTTTC TTATCAGAGCAATTGAAAATCGGACAAAATTTCAAGATCTCATTCGACGT CCGTGCGGCTAACAAAGCCGGCTCCCTCTTTTACGTGTACGGAGGAGGTG ATCATTTGTCCGTCACCGTCGAAGAAAACGGTTCGATCAAGGTGACGTGT AACAACGGTGGAGGGTTGTTCTCCGTGGCGTACAAACCGGAACCTTCCGT TTGCAACGGTGATATTTACAGTGTGCTTGtggagaagaaaatgaaaacat taaaattgACAGTCAATGGTGCCGTGACCGAAGAAACGACCACCAAATCA AGCACGTCTGCTGACACCAACTCGCCCGCTTACTTTGGTGGACTTCCAGA CAATTTGAGATCAAACTGGTCCAAGATTTCTGACAGTAAGTTTTTCAGAC CCTTCATAAAATTTGTCTTCTCCGTTCGTAACGTCCCTTCTACTAGATGA TGCTATCGTCTGTTACAaggatagtaaaggcgggaagaTGTGAATGCGCA GACTTTACAGCCATTTctgcggtatacggaaaaagtCGGCGCTAGAGCTT CGAAGAAAGACAGTCAAACTCTAGCGGCTGTAAACTATTtatggcaaaaa aaaacatatatttgTGAATTTTCTTCGACTTTgagcttatttcttagata gtgatttgtcttagactatagcatagccTACCCTCCTACTATCTTCCTAT CTGCCTTGTTTTAAAACAGAAACTTGATTCATTTTCTCAACCTATATCCT TGCTTCATTCTTAGGCAAAGACTACAAGCCCTTCGAAGGTTGTATCAGCA AAGTGGAAATTAATGACGAAGCTATCGACTTCacaagtgacgtcatcaaa aatggcGCCGTCATGACGGGATGTCCTGAATGAACAAGAATGATGGAAAA ATTTTGActtgttacaattttttttacaattttttagattatttttcata tttacttAGActaccttttttgaaaatatagcaCAGTGGAAGCACAATTA TACCTGGCTTCGCTAAAACAATTTATCTTTTCAGTGTACTTCAAACGCAT GAATAAAATAAGTGTTTCGATCTAAAGTCGTCAATTTTTCCGACTGAATA AAATTTAAAGGgtagagttttttattttttcgctgtGCTATACATTTATA CATTTATTATTATCtctattttcagtttttccgTCTTTCTATAAACTGGT TTGCTCTCCAAACGAACAGGTGTCGATACCTTTTACGCCGCCCCTCCGCC CCTCCGCCCCTAAACAATATTCTATGTAAAAAATCTGTATTGGTATAAAA AGCAtagaaaatgacttttttcaaacttcttctTAGTACCTTagaccata gaggtataaagaNCATTTctgcggtatacggaaaaagtCGGCGCTAGAGC TTCGAAGAAAGACAGTCAAACTCTAGCGGCTGTAAACTATTTAtggcaaa aaaacatatatttGTGAATTTTCTTCGACTTTgagcttatttcttagata gtgattttgTCTCAGACTATAGCATAGCCTACCCTCCTACTATCTTCCTA TCTGCCTTGTTTTAAAACAGAAACTTGATTCATCATTTTCTCAACCTATA TCCTTGCTTCATTCTTAGGCAAAGACTACAAGCCCTTCGAAGGTTGTATC AGCAAAGTGGAAATTAATGACGAAGCTATCGACTTCacaagtgacgtcat caaaaatggcGCCGTCATGACGGGATGTCCTGAATGAACAAGAATGATGG AAAAATTTTGActtgttacaattttttttacaattttttagattattttt catatttacttagattaccttttttgaaaatatagcaCAGCGGAAGCACA ACTATACCTGGCTTCGCtaaaacaatttattttttcagtgTACTTCAAAC GCAGGAATAAAATAAGTGTTTCGATTTAAAGTCGTCAATTTTTCCGACTG AATAAAATTTAAAGGgcagagttttttattttttcgctgtGCTATACATT TATACATTTATTATTATCtctattttcagtttttccgTCTTTCTATAAAC TGGTATGCTCTCCAAACGAACAGGTGTCGATACCTTTTACGCCGCCCCTC CGCCCCTAAACAATATGCTATGTAAAAAATCTGTATTGGTATAAAAAGCA tagaaaatgacttttttcaaacttcttctTAGTACCTTagaccatagagg tataaagaaNACATGCTTAGACCTAATACCTTTGCAAATTTTTACTTACA AAGCATATCAGTATTTTCATTGGAACAACTTATTTTCAACAaggttttcg atttttttttcagccgaTGGAAAGGAGATCATTAGAATTTTGCCATGAAA GCTAATTTTTCGAGAAATAAGTTGTTTCCTTTTTACaccttttagcaaaa aaaaaacccgcaaaattatttttgttgatgAATTTATGCAGTTATTGTAA ACAGTTTTTTTAACatctttttgtttattctgaaaaattt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064834TCONS_00064834Clytia hemisphaericatranscript
TCONS_00064835TCONS_00064835Clytia hemisphaericatranscript
TCONS_00064836TCONS_00064836Clytia hemisphaericatranscript
TCONS_00064837TCONS_00064837Clytia hemisphaericatranscript
TCONS_00064838TCONS_00064838Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064836-proteinTCONS_00064836-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:70581..77820 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.18 2.68 1.47 1.14 40.36 30.59 59.64 81.21 12.74 25.13 24.84 7.49 32.16 36.13 15.88 25.26 35.6 40.08 31.64 22.77 62.36 48.74 17.78 25.24 40.59 39.06 3.04 5.88 83.2 100.83