XLOC_041044 (gene) - C. hemisphaerica

Overview
NameXLOC_041044
Unique NameXLOC_041044
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_44:150519..157271+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041044 ID=XLOC_041044|Name=XLOC_041044|organism=Clytia hemisphaerica|type=gene|length=6753bp|location=Sequence derived from alignment at scaffold_44:150519..157271+ (Clytia hemisphaerica)
AACTGGTGAAATACATAGCTGAGAGGGCTGTATTGTGCGCTATGATCATC GGTGTTTGAGTAAGAAAGTAATAACAACTTACAAAGTCCGGAATGATGGT GAAAATGATAAACGTGATTACTAACAAAAAGATGGCGAAAAATTGTTTGC TATTCGTTAGCCTCCTCGGTGGTCTTTTCCGTATGCTTTGGGTTTTTCCG GCGTTCGTTATATCCGGGTTCACGCagttcttttttctgttttgcttaat tttgatgaaaatgtatAAATAGGCTGGGATAGCGACAAGGAGGAATATGA TATCCAGAATCGGAAAGAAAATGGCGTcaatgatgaaaatttccacATCT TGGAACCAGAAGATAAAGAAGAGTATCCAGTTGAAACACCACGCTAGTAT GATGAGCTTAATGGTGCTTCTTGTGTTCCAATACAACGGAAACTTGATGC TCAAATAGATTCGCATAAACCTATCTAATGACATGAAAATTAACGACTCG TACATCATATAATAAAAACTGTATTGAATCAGTGACATCAAGCGAAAATG TTGCGGTAAAGCTCGCCGAAAAATGCCAAAGACACATGTCTGTAGTTCAG CGATGGTCAGATTCAAAAGATAGATTTTCTGAGTAGTTCCAAAAGTTGGG TTGCTGAATTTTGTTGTTATTAACAAACAGAATCCAAGGAAGTGTAAAAC CATCGGAAAACCAATGAAAATTGTGATATATTCCATTTCGTGACCAAAGC CAAGTTTATTAATCAACGACAACTGTCTATAGGTCTTCGGTCTTCCAGAC CTACCGACATACGCCGAAAGAGCTGCCAGAGTTCAGTAGTTCAACCTTAA TAGAAGGATTGAAATTAAGCCGTATTATGATAATATCTACTTTCGATATT CTAGTCTCCGTGTTTGTTTTTTGCTCCGTTTTGTTGTATTAAAGTTTTGA AGGAAAAAGCAAACTTTTTCATAAAGAAGGATTTCGCAAGTCTTCCtctt caaaaaagattttcatttttgatatcCCCTTTACATTTTTCATTACTTAG TCCAATCAAAATAATTAGTTCGAGTTAGgatatcattattttttaattga aagccCCCTAGGTCTTAGTTATCATTTTAAATGATCTGTGATTAGGAGAA AAAGACTCCTTGTTCCATTTTTCCTAGCATGCACTGCAACCTACGctttt tattttggtgaaaTTTCCTGGTCATTTGTTTAGACTACTCGAGTGTTATT AAACACTAGAATtcgttgaagaagaaaaaaaacagaaaacttaTCCGAAA TAAAGCCTGCTTGTAAAAGCGAAAGGGTATTCGCCGATCAGATGGAAAAC ATATTCGTTAGATATCTGAATGGTCAATTAAATGAAAGACTACCATCCCT ACCATATGTTCCATATTTCCCTTTTGTTGTTCTTCTTTACTTTTCGGTGT AGTACCCTTTCCTGCATACTCCTgtacattacacgtttttttataaggga caagtttataaggaacttgaggctgaaaaaggtctgaaaaataaggaata gttaaggaactgctcaggctcaGAATAAGAAATGAAGTCAAGGAACAGCA AGAGTCCAACTTGAACTTTTACACATTTACAACAACCTaaataaaaagat gtaaaaatgtTGCTGAAACATCGTCCAATATGTCACAAAGACAAAAAATG CTTATGCAGAACACATAGCAAATCCAATCTTAGCAGCTGAGTAACTAAGG AACTTTGAGGTTGAAACTCTTTGGAAAAATAAGGGACTCAAGCCAAGTTG AGGGTTCCTTATAAATAATTGTATACCCTGTATACAAATAAATATCCGAT ACcttaaagaaatgattttagaCCTTTTATCattattagcgaggttaagc aagaagctatctattacatacggaatctattacgtgagtttttagACTGG ATCCGAGGCGTTTTAGCCTGATTCCTAAAGCTTCACGGCATAGAAAAAAA AGTGGTTAAGCAAAAAGGCGATCTATGACGTATGgcgtaatgtttatttt tccgtATCTCACTTTCGGCCCCaacttataaaattttatttttctttctt tcttttccagcTTTCTTGTTGGTGGTCTGGTCTATAAAATCCCCTTACTT TCAATCTTAATCTACTAAGTTTTTTCCCAAGACAaatgttttcacaaaaa ttaaaactagaCAAGCATAGTCAAGAGTTTTCTCTGTAttacttttatta tttttatgcaacatttttataaacaaaaaatatgactATGACTTATCATT TCAATGAATTCTTAACATTGCAATAGaaatatataatttcataatttcat tccTAGTTTACATAGGTACCAATCAAAAATTACtgctttatttataaaca aaaaaataatctgtaAGAGCATAGTATATACACTGTATACAGTCTGTCAT CCTTATTTAGCTGCACTTCTATATGAATGCTTCACCATTAGCATTACCAA TAAAAAAGTGTGCAAACCAGGTCTCGAGTTTCATATCTGGCAGGTGTTCC TTCTTATGCTTCTTTACATTCCAAGGTATCAATGTCACCTTTTTAGGAAG GGAGATGTCTCTTTAGAATCAAACCAAACTTTCTGGAACGTTATAACATT ATAATGTCGAAGAAGATGGAGGATGACCAGTCAATAAACATTTTTCAGTA AAGGATTGAGAACTTAAAGCAGTAGCGGTTGTCCAGAAGATAGAGCTTGA TATAATTTTCGAGAACGGTTTGAAGTTCAGCGGTTGTGTGACATCAGGTT CTTACTCAGGCTGATTTGTACGTACAATATATGGTTGATGATGGAGAGCA GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNGGAAcaataaataaagatttcttcTGTTATGCTTCGGGTGGA AGGGTAAATTTATTTGAGCTTGGCAGAGCAGTCTTTTTCGTGTTTGTTGC TTTGGGTGTGGTTGACATTATAACTTTGTGGCTTCTTCACACTTGATGGT AGCACCACAGAAAcactaaaaaacatgaaaaagaaatatggttacATGCT GTTCATTGTAAAGGTTACTTTGGATGTATTTGGACTTTGAGAGAAtataa aaagaaagataaaaaacagtagaaaaacaaacagacaaaagaaccagaaa gaaactttctgtttgttttggtttgataaaaaattcagcAAAGGTTATTT AATTACACTTACATCTTGACCTTCTTTTGAGCAATAAATTCTTTCACTTT GTTTGTATGCATCATAGTTTCCACAGATgagattcaaaaactttcttctG TCAGCTCAAACTTGtcagaaagtcaaaaaaaactctaccaaagtttcttt tctgtttacatttttttcgggTGATTTTTGATCCTAAGCGATTCAGCCCA ATCTCCGTAAGGTAAATTTCCCTGGATCATACTTATATCCTAATCGATAT CTATTACGTGAGATTGGAGAATTTCGCGCAATAGATCCACTCCTCAAACT ATGACGTACAGGTCAAATTTCACGGGACAGAGTTAGCCTTGAGATTTGGG CGCTAGCCCGCgaaaaactcacgtaatagattccgtacgtaatagatagc ttcttgcttaacctcgctattaagaatatttatgtttgattttgaaattt ctcataCTGTCTTTAATTTCTTGTAGAACGGTACTTGTTTGATACACACC ATACGTCGTGGGATTTTCATGCACACTTTATCTCCAAAACACGCCAACAT TGAGGGTGAGACGAACGTGCTCCAAATCAAAGTTTCCGACCACGGAAGAA TTGTCGTCCTTTCCAATGTTAAAGACCAAGACATGGTAAGAAAAATAACT TGCCTCATGTTTCTTGGAAGatggaaaatgaaattttcttccagcGATAT TTTTATTATTAGGTGGAGGCTATCCTGAGCCTTCCAGGGTCCCTTTTCCG ACTGAAGGAATGGTCACAAAATCACTAAATTAGAAAAACTTGCAAGATcg cattttgatcattttttccaaattttcaaggTGCTAGGTTACGGGAAAAA TATCAGAGTCGAGTCTGACATTTCGCCAGTTATCcctttaatcttttttt tgtgATCTAAAAATGCTGCATAGACTTACCTtaccttttgatttttctaa tatttccaagtatttcttttgaaaaataaaaaactaagtTGTGGAGcttt aatattttcaatatttgactTGCATAAAGTTGACATTATAAAGCGGTCGT Gattttataccgggtgcgccacaaaaaagtttctctctttgagactaatt ttctcgaaatctaaaaattttagaaaaaccattcctatatcattggaaag aagaaagatagacttaaattttgatgggtcatttattaaattcgattcat cagatcaaaagttatgctcaattgaatataAANNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNACATTATAAAGCGGTCGTGATTTTGTATTTCTCCTCTTTTCTTA CTTTTCAGTCTTGTCATTTCCTGACAGTGTACACCATCAACAGCCACCTG TTGTACAACCTCCCCTTAAACATGGTGGTACACGACTTCTGTCTGACCAA CAACTTCCTTGTCTTTGGAAGTATGAATGGAGCCTTACAGATACGCCATA TGAGAGAGTAAGTTCCCCTATTCAAACTTCACATTGTttaaaaactgctg acgtcatcaaaatattgTGCAAAAGTTTCATTccttttcaatcattttta aagaatttgccagattcttcttcttctatATCTTCTTGTTCTTCAAAGTG GTTTCCATATTTTGAcattaaaattttctgaaaatatctCATCCACTTGT TTTCAGCTTGAACGAGGCTGTAGTTTCCAAGAAAGTAAAAGCACCCATCC GGACGGTCTTTGCAACTCACAATGGCTCCCATATCTTCGTCGGTCAAGAT GATGGAAATATTCTTGTCATTTGCCCTTCCAAATTGACCACGTGACCTTA ATATCTCTTTTGATTGGATGACTAGTAACGATCTTTGGTTTCATTGGACG AAACTTAACCTTGGACGGAAACATTTTACTACAAAGTAGTGGTGTTTGTG CTTATCTAAATATTATATAACGAGTCGAGCTTATTAAGTTTTTGATTGCG CAGCTGGTGTTCACCCCCGAAATATTCTTAAAACTATCGATATTTTAACT AATGATTAGATAAATAATACAATTTTCCATTAGGCGCAGGATTTCTGAGT CAAAGCTGGTTTATTAGTAAAGTTTGCTTTCTTTGTATATTACTTTCTCC ATATGAGATGGagttttataagatactttaataattggtcatttgaagta ataaaaatgacgcgtttattagaaaaagcaacaaaattgttttattactg gttaacgactaACCAAATCGAATAAAAGCTGGTAAAAATTCCATCACGTC CCACTTTCTCAATGAAATTTCCAGGTATTGATTGAATGGTTGAAAAATTC ATCTTACTCAACCCTACCATTCAATGTCCAGTTCTAAACCATGGCAATCT GTTCTTTTATGAAAAACTTGCGACACTGACTTGGGTCTCATTTCTTCAGG TGAAAAATCACTCCGAGTCTTTcgagtaaaaaaaattcaaatgttttttt ttctcaattgatTACTAGTTGCTTGTACAAATTGCATTTAgttgtttttc gtttttatttatattttctataccaaattttaaatttttttatactttgt tattgttttttcaaaaaaaaatttcggacTTTGCACTTTAAGTAGCGAAA AATGATAGATAATTTAAGACACTTTAATAatcgaaaatatattttttgtt gatttaatAGGTGTTATTTTCCGGCGTTCTTGTAATATTCTCGTGTAAAT TTCATTGAACTTTTCGCaccctttttatatattttttttttcaattttag tcattttgtttactttctttttctaaaattttggggcggatctttttttt ttt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065484TCONS_00065484Clytia hemisphaericatranscript
TCONS_00065485TCONS_00065485Clytia hemisphaericatranscript
TCONS_00065486TCONS_00065486Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:150519..157271 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.79 2.92 3.99 4.59 10.71 7.21 6.76 8.34 4.43 5.69 6.27 3.44 5.99 4.8 4.85 6.42 4.77 5.65 6.86 7.64 5.09 5.94 5.98 6.93 3.46 5.15 9.16 8.26 7.66 7.55