XLOC_041618 (gene) - C. hemisphaerica

Overview
NameXLOC_041618
Unique NameXLOC_041618
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_456:755076..760510+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041618 ID=XLOC_041618|Name=XLOC_041618|organism=Clytia hemisphaerica|type=gene|length=5435bp|location=Sequence derived from alignment at scaffold_456:755076..760510+ (Clytia hemisphaerica)
caatagaaAGAAAAGATTCTACAGCTTATTCTTCAATAGATGGATAGCac
atttcttatcctctttttccaaaattggtATAAATACACTGAAATTTAAC
TGGATTAATCAATCCAGACTTCACTCTAGATTGCTGAAGAAGTTGTTCTT
TCACCAACTGAAAGTCCATTGATAAGGTAAGACATTtcatttattaattt
tcttaGCAAATCTTCCAATTTTCCAAGCCATAGGTAATCCATAGATGTCC
ATTCGTTTCGTTTGATACTCCTAATTCTAGATatatattttacgtggata
gcccagtaatctaggacttttagacagtctttcgattgttttcacggggt
ccacctCCAGCCGGcttggctatctatgaactgaacagagcattggaagg
agcggggattcgaactaCGAATCCCTAgtttgagacgctgacgcctttta
ccacttggccatcgctccatGGCCTACATAACAGAACTGTTGTACAAGTG
ACTTCAAATCTAAAACAGTGCTCAATATAGTGGTTTGCATAGTGGTATCA
TAAATACATGGAATTCCCGTTAAAGTAAAAAGAAAGTCAGTCTTGTTGTT
GAGATAATTGGGTATAGTACTTAATTCTTTGTGTAAATCGTAATCTCATA
ACATAACATAACTATAAAAGGATACCCACTTCTTTTTTCAGCAACCATGT
TGAGAGTTTTGATAACCATTGCTTTACTTGGCGTTGCTTCTGCAGCTGTT
TCAACCAAGATCGCCAACTGGTGGACTACATTTGATCATGGTGGTTGGTC
CAAATGTGCTGATGGCCATTTCCTGACTGGTATGTGGAGAAGTGCTCGTC
AGCTTGGAGATGAAAGAATCGGCAGAATCGAACAAGGAGATTGTAAAAGT
GCTGACAGTGCATATACCGGAGATTGCAAACAAATGGATTGCTACAAGCT
GAATATCTGGtcaattttcgacaaaaaaggTTGGGCAACATGCAAACCTG
GCTACTTTATCCAATCCATCTTTTCCACCAAAGGAAAAGGCCTTCACAAC
ATCGAGGAATTCCAATGCTGTAAACCAAGATCTAAGAAAGTCAAGCAAGG
TCAATGCTACATCCAAAACGTTTGGAAATCCTTTGACAACAAAGGTTGGT
CTAAATGCAAAGCTGGATATTACATGCAAGGTATGTTCAGAAACAGCTGT
GACAAATTGTATTGTCTTGAGGAATTCAAATGCTGTAATATGGTCGCTAC
AGACTCGTCTGTCTCAACCAAGATTGCCAACTGGTGGAGTACATTCGACC
ATGGTGGTTGGTCCAAATGTGCTGCTGGACATTTCCTGACTGGTATGTGG
AGAAGTCCTCGTCAGATTGGAGATGAAAGAATCGGCAGAATCGAACAAGG
AGATTGTAAATCTGCACCAAAGAATCTTGGATCTGGACAAGAATGCTACA
AATTGAATATCTGGtcaattttcgacaaaaaaggATGGGCAAATTGCAAA
CCTGGTTATTACATGCAGTCTATCTACTCCACCAAAGGAAAGGGCCTCCA
CCATATTGAGGAATTCCAATGTTGCAGACCAAGCGGAGGGGTGACAGTTG
ATGGTCAATGCTACATCCAAAATGTCTGGAAATCCTTTGACAACAAAGGT
TGGTCTAAATGCAAAGCTGGATATTACATGCAAGGTATGTTCAGAAACAG
CTGTGACCAATTGTATTGTCTCGAAGAATTCAGATGCTGTAGCATGAAAC
AAAAATGTTGAGAGACCTAGAGACATTATGGAGAATatagtatttctttt
tcatcttcaatcttATAAGGCGTTTAGGGGAATGAGTATTTAGAATTTCA
ATAGTCGATTTGTAGATCATTTACCAAATATTTTATCACTTGTACTTCAC
TATGAGCTTTTTTCTCACAATAGATTTACTGACTTGcattcaaaaaatac
aaaaagtttcTTTGATACTTTTCACATCCCCGTCAATACTCCaataaaaa
cacccccttctcacagacccactgggaccccttcccacttggccaaaata
tcgtccccttTGGAGAactatcctccaatttttgttcccactaaaaataa
tcaaataatccaatcctcactgcaaaatatttactacttttcccatcccc
actgagttCTCTGACTTGACAACAATTGAATTTAAATCCCAATTCGTAAC
AAATATGACAATATCAATCCCCAGCAagtttcagtccattatttttatcc
ccactggctgaaaaagtcctaccgggtctgtgagaaggggtgtataaAAA
ATCTAAAGACATTAATTGTGTTACAAATATGTTCGAACCATTGTTACATA
AACTCTGTTGTTCTGATGGTTAATCGGGACATCAAATGTCTGCTAAAAGC
ACCATCTCTTTCCGTTCGTCTTTGTTTATAAATCTTTTTGAGTTCAATTC
TCGGACAACTTGAAAATATATAGAAATCATCGCAGGAAATAAAAAGGTGG
AATTCAACCCCAAAAAAATCTTGACTGAAAAGTGAACGATACGCCAGTTA
TTTAAGTTTTAATTTTGAACTCCAATTTCATGTCCCATCCGGTACAAAAG
ATTTCGCCTGATAAAAAATATTAGTAGGCATGCTGAATGAAGATAAAAAT
GTTCAAACGAAAAAGGAAAGATAACAGTATAGCATAGAGAAGGATAAGCT
TGAAAACATGATGAAACTTGTTTCACACTGGCTTGCCGATGTTTTAGAGC
TAATAGGAGCATTGAAATTAAGCCATGCCTAGTTCCTATAAAGATAACTT
TATCTTTTTAAAGGTAAAATCTTATGAAACAACTTCAACAAATCcgaaat
ttggcccaaatttttctaaacaatttcttttgaaaatctttaagtCTTAA
ATTTTAAGGATTACAGTATAAATCGAAAAACCTATCAAAAATTTGGTTTC
gtcactttttgggtactttcaTTCTGCATCactatgaaaaaaatcagaaa
aaaaataataggccaatcccgagaaaagctggtaacagacgaacgaacaa
aaGAGCGGACGAACAAAGcttaaattaaaggacctccgagggaggtccaa
aaagaaaattatctCCTAGAATGGGACAAATAGCGTaaaattttgcagtg
aggataggtttatttgattattttcagtggggacaaaaaatggaggataa
ttttccaccagggatgatattttggacaatttttccagtgggaaggggtc
tgtgagaagggggtgtcacaATAAAAAATCTGTTAACTTTCCATTTTGAT
CATAATATATTGTTCTataagatgatgattttaaGATCTTTCAggatctt
tttttttgttcctacctacaatcctggccaaaatatattgagaatttagc
ttatttcctcgtttttcaaaatttggaattcgggcgagaaagtcgttttt
gggctaattgataaatttattcNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTATTCgtc
taacctaatttagagcgcttccaaaatacttgtggttataagatttcgtg
ggaatttcccttttgtctcaaatattatggccaggattgtaggtatctct
gaaaagaaaaaaattaaaaatagccAACATTTATTTGACGATCTCACATA
TTTACTGAGAAATTTCAATGTTGACTCACAAAACTCACAAAAAAAGTATG
GCATTCTAATTTTTGCGAgttctgttgttgtttttttttccatggtGAAT
TTTAAAATATCTGGCTGTAAATGACACTTTCGATATTTGGCGTGAAAGAA
AGagttttattttagttttattcaattaaagtacatttcaaattatctgg
cagtaaattttcaattgcgtattacttttgatagatttcgaattagatag
cgattttatactttttggaacggcaatccggagtggaatattatgcgtat
aaaatttttctaaaattttcaaacacgaagatgaaaaactaaagaaaaaa
ttcagcTTTTTATCTAGCAATGCTATAACTACCATTTTTGGGGTTGAGAA
ACTTCAATCTTTGCCCATTCAgctatgaaaatctttttcgaaaaaaataa
ttcagtcGAAAGATATTGGGCATGAAAGGAGGCTAGTTAAATCTTATTTT
GGGACGAGGTTGCATAaggtttttatatattttcttttaaaacatgttga
tttatgaaaatatgaaaaaagcattttccaaaatttaatcCGAAAGCTTT
GTTTTTCTCCCTTTTTACATACACCCTTTACGATGCACTTcgaaaaacct
gaaaaacgtAGAGTATCCTTAACGACCGCGCCTAAGATatttggctttga
aaaatattaaaaataactttaaacTTAAAGTCTAGGATTTACAATCCTGT
TGCATTGCTTTCAACCTTCATTCATGCTAATTCCAATAAGATTTGATATC
ATAAGAAATTTTTCCCATGTGAGcgactttttggccttttttaaGAGCGT
TTGTGgctaaattttaataaaaattattaaaaatcataaaaaaaactaat
gacaaTAAATTCGAAAGAAAGATACTTCAGTGTATGGGTTGGTAATAAAC
AATATCGTCATCATAACATTCTCCTCTACAATAAGGACAGTTGACCAATT
GTAAGGATTTGTTGAGACAAACACTTGTACTCATCAATACATATCCATCA
ATACCCtaaacgaaaaaaagttaagaatgttGGGATTATAGTGTGGATTT
GCATCACTAATAACCTTCTGaaaaatttggttgaaattcCGTCCCCGGCG
TGGGAaagaataccctacaatttGAATTCGACTTCACCCCCTTTCGAAAT
TTCAATATAAAGATTGGCACACTTAAACTATCCCTACTGgaattttgagc
ttggaacaTTAGAATTTCTATCCATGTTGAATTTCTATAGAAAGGATATT
CCACTGGGACAGTGGGACAGGGGCGTATAAATCGACTTACTTTGACTCTT
TTACAGGCGGCACACCCTTTAGCGTTCAATCCTTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00066522TCONS_00066522Clytia hemisphaericatranscript
TCONS_00066523TCONS_00066523Clytia hemisphaericatranscript
TCONS_00066524TCONS_00066524Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00066523-proteinTCONS_00066523-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:755076..760510 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.1	0.12	8.7	9.76	291.8	79.82	246.36	402.54	181.3	199.28	968.58	831.82	66.17	86.95	234.34	199.03	0.06	0.15	0	0	0	0	0	0	0	0.06