XLOC_041621 (gene) - C. hemisphaerica

Overview
NameXLOC_041621
Unique NameXLOC_041621
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_456:826124..831827+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041621 ID=XLOC_041621|Name=XLOC_041621|organism=Clytia hemisphaerica|type=gene|length=5704bp|location=Sequence derived from alignment at scaffold_456:826124..831827+ (Clytia hemisphaerica)
CAGGTCGATGATACATCTGAGAACAACAACACTGTCGATAGTAGCGATGG
ACTTTTCAATGATGCGATCACAAATTATTTGAACGCTTTGAAAGTAAGCG
AACGACGTGCCGAGAGTGTTTTACAAGAGTCAAAAGAAAtcgtttctttt
gttgaaaattgtaAGCCATTCGTACTAGTTTTTGATTAATTGAAATATTG
ACATTCTCATCTCCTGATGCTGTTAAAATGCCTTCTGAGTAGAGTCTTTC
ACAAACAGTCAACTCTTTcttattcgaacctctattattatTTTACCCGC
TTTATTATTTTGTCCGCTCAGCTGGAAGGTCGTATAAACACTCTCCGtat
ttcgaatttttctcttattcgaATGAAATTTATTGgtctcttgaagatcg
aattagagagagtcaactgtatctTCAAATCTGCGCTATTCAGAGTCTTT
TGAGTCTACTAGATGTTCCTACTAATGTTTTAACTtctattattatatac
ctgtaggcaaaaacagccattgaataattcctaatataccatggctatta
taccacggtagaatttttggacctaccctggtgggctgtaggtcctataa
attaacctctgttcgttcgttcgtccgttcgtccgttcgtccgttcgtta
ctagcttttctcgggattggctcattaNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNaatgtgacggagcccgattttcga
aaaaaattcattttcggccgaaaatgccggaaatatgccggaaaaaccgg
ttttttggcattttctcgagatttcatcattagttttttctgattttttg
cacaaagatgcgtattagcaatgcctaaaacatggattagtccgattctt
gataaaaattctattccggctgaaaatgccggaaatatcccggaaatcgc
cgtttttgcagattttcattggactttttccttatatttcgttgtttttt
cacacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgccg
gaaaaaccggttttttggcattttctcgagatttcatcattagttttttc
tgattttttgcacaaagatgcgtattaacaatgtctaaaacatggccgag
ttcgatttttgagaaaaattctattctggctgaaaatgccggaaatcgcc
gtctttgcagattttcattatatgttttccttgtatttctatgttcttca
cacaaaaacattattgataacaagttcaccatcaagcatgattcaattgt
caataaaactgatttttgcgaccagaactttctattaatttttccctaca
acccttccctgtcccccatcaacaatcaatgatgaatttattgcgttatg
cattttcgctaaacgatatattttctgactgatttttttctcctcgcatt
gctatctaactttcatcatcaggtaggtccattcagcatctagcttgttt
tttcaaattttgctttcaaagtttgattttttttgtcgtttttgttgtta
tatcaaagaaattcattaaaataaatctattgcaATTTCATGAACAcatt
ttatgactcaaagtaatcaagaaaatcattaaaaaataaaaacattcgaa
cgttcgattatatgggagtgttttatgtGAAACGTTTAACAATTGACATT
TATTATATatctgtaggcaaaaacagccattgaataattcctgatatacc
atggctattataccacggtagaattttgttttcaaattttgagttttttg
ttgctttggttgttatcaaagaaattcattaaaataaatctattgtcaat
ttcataaacaaattttatgacttaaaGTAATTAAGGAAATcattaagaaa
gaaaaacattcgaacgttcgattatagGAGTGTTTTAAGTGAAACGTTTA
GCTATTGACATaattaatgttttatttttgcctctaggtatataataaaa
catatattcaataggttttcgttggttattggatttattaaccctcggtg
atgtatattcaactcggcttcgcctcgttgaatattacatcacctcgggt
tagtaaatctcaataaccaacttttacccattgaatatctgcttattatt
tGTCGAACTCCACATTAAGAATAATATTGTGCAATTTCACATACCGAATT
TAGGAAAGAAAGGTCATATATATTGATGAGAAAGGCTTTGTCAGTACGAT
TCAAGGTCTGCCTCAACCTTTTTAAACGtttcagaaaatgaagatgaaaa
atgaagaagaattgCTAGAAACTTCATCTTTCGTACAGGAGAGGTACCTT
AAAGTATCCTTCTTGGATTGGTGTTGTATAAAACTCTATTAATTGAACTA
TTGGTGACTTTTAAAGGTTTGCTTTTCACATCATCTTCTTGAGCTTCCCT
TTGTACATCTAGCGAACAGAAAGACATCAACAGAGGAATTGCTGAAGAGA
AAATTGCAAGAAGAATTATACatcgaaaatgaagatttaattTCATTACG
TAACACTGTAAGTCAATCATTGAAGAGGGTTGCGCCAATGAAATCTATAG
CCCAGTGTGGAAACGATGTAAAGTCCACGCCGAATTGTTATTTGTTTAAA
ATGAGGTCTACaacaaaaaaatccgaaattgCAGGGGGGCTGTAAGCCCT
CCAAACGGGTCCAGGGCTGAGAAGCCCCCCAAAATCACCATTTCCACGCT
GGTCTATAGCTTATTTTATTTATCCTGATAGAGATTTTATATCTATCTTA
TTAGTTGGCTAAAAATAGGCTAGAGTATGTATGACTCAAATGGTCAGAGt
gaaaaagaaatctttcttttgtcatggagacattcgagttatagaggttc
taCTGTAGTACCAAAGCGTAATGAACTAAATTTTTGGAAGGATGACTAAA
TTTCATGTCGATTCATCTCAAAGGAGGGTTACGCATAATACCGCGTCCTT
ACCTAGCATGATCAAACTTTCCACAGCTCCCGATGTCCAATTGTGGTTGG
AAATTTTTCCTTTAGAGCAGCCTGTATCATCTCTCAGTAGTTGATTGATG
CTTAGGTTTTGCAATGGCCACCACGTCATCTTTTTCTCAGTAGAAGGTTC
CAATTAAAGTTCTACATTTATTAGTATGGTCCGCCAAGATTCACTTGAGA
TTCTTTAGCATAGTTATAGttaatagcgagattatgtatctggaattctc
tacggctacggttagagtggcgagggaaatggcgagtaaggcaagtaatg
gcgggtgaaagcaagttcgatatttaacgtacggcattatgtcgactttg
cttgtacggtgttttggtgtttttcccgtacagagcaaagtagacaacga
catgtcacctttggtgacgacccgtatgggtagccccgcaaccgtagtcg
tagaatatctccgatacataatctctcTAATGCACTCTTATCAGACGTTA
TACTCTTCAATACGCTCATTtgtgaaagtcaccgtcaacaagaactTCTC
ATAAACGACACCCCTTTAAAATCGAATAAAAGAGAGCGCCAACTGTATTT
CTAAATGCATTTTTCTTTGCAGGTTTTGAAAGACTTGGAGAAAGAAGAGG
AAGAAGAGAACCACGTGGCTGTCAAACAGGAGAAGAATGATGATACCGTT
ACTACCGCTACAAGTGAGGAAGAAACTATTGATGAGATCAAAACATTGGA
AGAACAAACAGAAAAAGAACTGAACGAGTTGACggaaaaacaaaatgaag
aagCTGAATCTAAAaggttgattttctttttttctagtgAATGATTGAAT
GTACATTTGATAATAATATTTCTGTCAATTTAACTATTTGTCAATGCATC
AGGAAGCTAAGCAAACAACTTACGTTTATAGCTTAAACTTGACACTATAG
TATATATACACATTTGGTTGAGCATCCACCTTGCAGTCTAATGGTTATAA
GTACGACTGCCGCCAACATAGAGATTGGGTTGGTTgtattgggtaatctg
atctacaATCAACCTCTAAATATATTGATAACTATGGGTATTTTAAAGTC
GTTCAGAATTTAAATGGTCGGGCAAGAATTGCAATTTCAGTATGTCCTTT
TCATAGGCTTTGTGAAGGGGTTTAGTGGCTTCTCATCCTTATTCCCTCAT
ATTTGAACTTCTGGATCTCGAGATCCTTAGTTCCATAGTCCAATGTTAAA
TCTCAGAATTCAAAATCTACCTTCCAGAATTATATTGGAACTTTTtgcag
tttttaaaatttttcagggaatttcccttttttcaaatattatgactttc
aTTACTGTAGCAGTAGCAGAGCTAAAAAGTATGTGCGGAGCTCCACTTCG
AATTCGATTCCCAGGTCTAGCGCGAAGAGAAATTGGGATAGATGCTCTCA
CTTCCTGCTATGtagacagccaccagatgaagaATATTTTACAGCCTGAC
tttattttttcctctttcatCAACCTCGCAGGAAAGTCACAGAAAAGCTT
CGTAAAGAGTCTATCGTCAACGACCTTCTAAACGAAGAAAAAAGACGAAA
ACATCAAAGCTTGATCGAGATATTTCGCACGAAGCAGGAGGAAGAGCAAC
AGGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00066529TCONS_00066529Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00066529-proteinTCONS_00066529-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:826124..831827 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.31	8.01	4.21	4.22	20.3	18.85	14.32	15.53	9.39	11.94	8.32	10.22	4.16	5.33	4.72	5.42	3.15	4.74	4.36	2.07	3.31	2.07	6.5	6.83	13.85	13.11	13	7.15	6.83	9.39