XLOC_042522 (gene) - C. hemisphaerica

Overview
NameXLOC_042522
Unique NameXLOC_042522
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_48:134700..139676+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042522 ID=XLOC_042522|Name=XLOC_042522|organism=Clytia hemisphaerica|type=gene|length=4977bp|location=Sequence derived from alignment at scaffold_48:134700..139676+ (Clytia hemisphaerica)
ataactttttaatgacctattaattttttaaatctttttcaacacgattt ttatttattttgaatttctgGAATTTCTTCTAGATTTAGAACGCGGCTAT TTTGTGTTTCTTTTGCACCAAAGAGATAACTTGAAATCGGTAAGATATTT GAAAGAAACATTATTTGATATAAGGAGTATTTGGTTGAACTACTAAACCG ATTGAAAGTTGCCATACTTATTCCAAAGCAACAACAACACCTCAACTAAA ATAACTCCTCATGGGCTCCTCATAGAACTTAGGAATTTAATGTATAAACA TTGTTCTTTTGAATTTAGATTCTGATCTTATTTTCTTGGTGAATGAGTGT AACAAATTCTAATAAGTGTTCTTACACTATTTGTTAATTAATAACCTTTT TTCATTCAGAACTTGGCAAGAGCCACTCAACATGGCTTCCACCTATGATG TAATGTCTTCAGAAGTTATCGAAAACATTTACGAACAACTAATATGTCCA GTCTGTCTGGACCCTTTCAAAGAACCTAAATTCCTGAAATGTCTTCACAC TTTTTGCAATCATTGCATTCATGAGATCGTCAATCAGGAACCGAGGGACG TCATTATTTGTCCGACATGTCGTGTAGAAACGCCGATCCCTGAGACGGGA CTAGATGCTTTGAAGAAGAATTTCTTCGCAAACAGTATGCTGGACTTGGT TGCCTACCAGTACGAAGaaattaagaaagaaaaacaaaaattgggcGATT GTGATCAGTGTGCCGATAAAGATAATGTCAGCTCCAGGTAAGAATCGGTC TGTTTTCTTGAAGGTAATAGTGAAGGGGAAGGTGAAGAAGTTGTTTGTTT TAGATCTATTCAAGAGTGAAAAGATTCAATTCATACTAGACTAATTTTAC AATATAGGTACAGAAAGCTGTTTCCCTATGACTTTTATCTCAAAACTCTT TCTTCTCTACTTAAGGTGTTTGGAGTGTGACCTTCCACTATGCAGCATTT GCGTGGCCGATCATCGGCGAGGACATACCACGATGGATCATCGCATTGTC TCCACGTCTGATGAAGACTTCCATGCCGATAAGAACTCGTCCGATCAATA CACGCTGACGTTCTGCAAGTACCATACAAGAAACGTCATCAAGTATTTCT GTAATACGTGTGACGAAACCGTTTGCCGTGTATGTACCATTCTCGAACAT CGTGAGCACCAGTTTGTGTATCCCAAAGAAGCCATACCTCAACAACGACC CATTATCCAAGAATTGCTCACACAAACGAAACAACATATCCCTGTTTTGA GACACACCTTGAAAGACATCTCTAACATGCAGGAAGTTTTGGTGGACTGT AAAACTACATTATTGGAAGAAATCAACACCAGGACAcaacaaaaaattga agaacTTCTTGGTTGTAAAGAGGACCTTATCGCTGACTTGGACAAAATAT acaactccaaacaaaaaacattaagtCTTCAAAAAGATTCGATTGAGTTA GAACTCGGGAAATTGGTGGGTTCGTGTGATTTTGCACAGAATATTATTCA GGTTGGTAACGATGTTGAGATTCTAAGAATCAAATCTCGATTGCAGCAAC TCAATAAATTGGACATTAACTTAGATCCCGAGGAAGATGATTCCATCCAG TATTTAAAGGACGAATCACCTGAATTCCCTCTAGGATGTATTGCTGCAAC TCAAACGTTTGCTTCACTTTCTTACGCGCAAGGTGAAGCTTTCGAGACCG CCAGAGCTGGTAGCGAGACCAGTATTGTGGTGGTGGCGCAAACCAGGCAC GGTCAGAAGAACATTGGTCAAGATAAAGTGGAAGCACATCTAGTGGCTCC TGATCAAACGAAGAAATCGATTGAAGCAACCGATAACAGTGAGTCTTTTG TTACTTATTTCTTCACGCTAATTTCATATTGAAAATGCTTTTACTTCTAT CGAATTTATTGCTAGATGCTCTGGTTGCGccttatgaaatttatttgatc ACGACATAATCCCGTGCCTAGTAGAAAGCAATGTTCATCAAATCAAGGGT GGGTATGGAAACAAACTCCACCTCTCATACGTACAAACAACGGCAGATAC TCTAATCATCATTCGTTTATCTTTTAGATGATGGCACGTATTCCATCCGC TTCACACCTGATATTAGTGGGAAACACATGCTGGAAGTCACCATCAAAGA AAAACCGATTCGGGGAAGCCCTTTTCCAATCATCGTCACTAATCGACGAG AATACAATGAAGTCGGGTTATCTTTATTCAAGTTCGGGCAATACGGGTCT AAAAAGCGAGAATTCAAATCTCCTTTCGGTGTTGCGAGTGACTCAGAGGG CTTCATGTTTGTTGCAGATAGTTATAACCACAGGATTCAAACCTTCGGAC CAAGAGGGGAATTTATTAACATGTTCGGGTCCCATGGGGAGAGAAAAGGG GAATTCAACTGCCCTACAGACGTCGCAGTTTCCCCTAACAATCGGATTGC TGTTTGTGATAACGGAAACAACCGAGTGCAAGTGTTTTCAAAACGCGGAA GTTTTATCGCTAAATTCGGTCGTGAAGGAACTAAAAACGGACTTTTTAAA TCCCCATGGGGAATTACAATCTCCCAAACGTCTCGTGAAATTATTGTGGC TGATACTGACAATCACAGAATACAAATTTTCAGTGCCGAGGGAAAATTTA TCATGAAATTTGGTTCCCAAGGGGATCGCGCAGGACAATTTAATTCCCCA TGTTATGTGGCAGTCAACCCGGATAAAGAACATATTCTAGTGTCAGATTC GAAAAACCACAGGATTCAAATATTCGACAAACGTGGGAAATTCATCCAAC TTTTTGGAGTACAAGGACAATTAGATGGACAATTCAATCACCCGCGTGGT TTATCTATGGATATTGCAAATAACATTATTGTGTCTGACATGGGAAATCA TAGACTCCAAGTGTTGACTTACTCAGGGAAAATGATTAAGTGTATTGGTT CTGAGGGGAATGGGGATGGTCAACTCTCCTTCCCTGAGAGTGTTTCCGTC ACACAGAATGGATATATCATTGTGTCAGACCTCAGCAATAACCGAATACA AGTTTTCTAAGAAtgataaaacaatttttaatacaAGAATTTAAAggcat ttttataaatttaaacTGTAAATTTCTAAATTATAGAGTCAGCTCTAggt taaagaaaaaagagacaaaagcttACATGTAAAGGAAATGTCTGCTCTTG TCACGCAAAGGAGGATGCACAGATCTTCCTTTAAAGGCTGCCGTTCTGAA CCTTTGAGTTAGAAAAACAGTCCCTCCATTCAATCATAAAATTACAAAGT CCCACTTCATTTCAATAACATTTTGATCACTCAAGGTCGGTTGTCATCCT TTAGAATTATACTTTCTTGAAAAGAATGCAATAAGGTCGAACTCGTTCTT CTGATGTGATAAAATAAGTGTCTTGACCACCACTAGGAACTTTGTACTCT GCTGTGTAACTCATATCTACACGATCCATGAAAATCATTTTGTATTTATG tccttcaaaatcaaaactctCTGATTGCTGTTCGGCCAAGTGTGGTGAAG ACGTTGTATAGATCCCTTTCCCTGGAGTGAAATTTTGGCCCTGGTGCACT GGGTTTCTGCTTCTTTCCCTGCAAAGTTTCTCAACGTCTCCTTTCTTAGT GCCATGGTATGCTACTGGCCATTCACCACCGGCGGATTGCGTTTCTGATT GGCGCCCTGCGACTCCAAGCCACGTGTTGTTTTCATACTTTCCAAGCACT CTCAATGCTTTTTTCATCCATCCACATGGTCGAATGAATCGTCGATTTCC CCTTGAGAATTGCGTTTTGTCAGCTGCACCGTATTGGTAATCATACTTCG GATGAAGGAAAGTTTCGGCGTTCATGTAAAAAGCAGGGGCAACAGTTTCA GCACTGATGATCATGAACAGTGTGGCATTCTCAGTAATGAAACTATCCTT AAGGGTGGCTTCATCCTTCAAATTTTTGTTGAGATGCAAAAGTTTAAGGC CTTGTGTTAATCCAAGTCCGTCAGATGATCGAATCGAATCTTTGACGTCT GAGATTTGACTGTCAGGTTTCACTTTCACCATTGTTGATTTTCCGGTGAG AGTTTTCACCGTCAAAGTGATATCTCCACTGGCATTCGATTGACCAGGAT TGCTAACCGAAGGGCTTTTACTTGCTAGATTCCTCTGACCAGAGATGGCA GCTTGAGCTGTAGGGATATTTGTAGCCAGACCCCTTTGAGCAGGGCTTCC AGTCGGTGGAGCATTAGTTGCTAAGTTCCTTTGACCAGGGAGTGATGTAG AAGGAGCAGCAGCCGAATTATTGTTACCATCAGAGGACACCCAATGCAGA CTGTATTTGTGCAACGAATCCAGATCAAGAACAGGTAAAGGTTTGCCAGT GTTGATGGAAGGATCAGATGGTGTCAATACAATCTTCAGATTTAAAAGAT CAGATAGTCCTTTGGGAACGATGTCAGCCATCCTCGCTTTCGTCAAACAC GTTCGATACCAAAATGTTCTCTGAAAATTGTATAAAGTGGATTAAAGTGG CACAGGTTATGAGAAAACTTAGGGGACTAGGACATTTGACCAAGCGTAGC TTTCATCTATAATGATGAGGCTGTTCGTGAAATGCAAGCTTTCACAATAG AAGTCATAAACAGAGAAAAGTCAAACCACCCATCTATGTCTCAGTGATCT GGTGAGAATTACATTTCATAGGTCCAATAGAGACGATTTAGTTTTTTACC TTTCTTaacaaatttcaagattttttaagatCACGATGTGATGTGAAAGT TAAAATCTAAAGAAAGAAAACCCCTACCTTTCAACCTgctctttttattt taaaacacTCATGCAAACTTGCAATCCAacttaaacatatcaaaacaacA CAACATCTCTTTAAACTTTATTTGAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068110TCONS_00068110Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068110-proteinTCONS_00068110-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:134700..139676 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
TRIM3tripartite motif-containing protein 3 isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.08 0.25 0.07 0.07 0.78 0.89 12.66 12.59 0.99 1.37 7.16 3.99 6.65 5 4.22 15.28 8.72 8.21 0.56 0.44 2.53 1.99 2.71 4.16 4.59 5.86 0.87 0.61 0.16 0