XLOC_043356 (gene) - C. hemisphaerica

Overview
NameXLOC_043356
Unique NameXLOC_043356
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_503:68749..73192+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043356 ID=XLOC_043356|Name=XLOC_043356|organism=Clytia hemisphaerica|type=gene|length=4444bp|location=Sequence derived from alignment at scaffold_503:68749..73192+ (Clytia hemisphaerica)
ggCCACATTTCCAAGAAGGATTTAAAGCACCCATGAAAAAGGTTGACAAT
GTGCTGAGAGATTATTGTGATGGAAAGGTCTATCAAGACCTACTGGAATC
AGGAATCATTGGAAGTAATACCATCACATTGCAGATGAATTCAGATGGAG
TGAAGATGTTCAGTTCATGTAATTACTCAGTATGGCCCATCTATCTAAGA
ATCAATGAACTTCCTCCTGCATTAAGGTAAATACTCTGATTTTCAacaaa
tacattttaaaacacTTCTTCAGGAACTGTCAGGAAATATGAATAGGAAG
AAAATTGGCTGAGTCGATTAGGTTAAACATTAATTAAAGACAAACTCAAC
ACCGTAAACCTTCTCTCTTGTTTGGAATGAAATAATCTCATGCTTGTTTT
GTCTTGATCACTATATTTAAATAAAGGAAAATCGAGATTATGAAAAGGTC
TCCAATTTTTAAGGtagtaatatttgagaaaaaaggaaattcccaCCAAA
GTTCAAAAGgaaaggtagagttttaacaaaaatagcctggaagtctataa
accccacccaaattgaaatatttgattacATTTAACAGATAGCCCAAAAC
CAACTTTCTCTCCCaaacttcaaatttcaaaaaacaaggaaataaccaaa
attcccaTATATTTGGACCATGATTGTAGGACCATAGCAAATTTTAGTTA
ATTATTTGTTGCTATATTTTGTAGAAAATATAGCTTCATCAAATTTGTCA
AAcaatattttggaatatttcacATTGTTGAATTTCGATTCTGATCATTC
AGGAAATTGAAAAAGTTCCGTGTTTTGGTTGGGATCTGGTTTGGAGAGGA
AAAACCTTACATGAGGAGTTTCTTGCGTCCTTTAGTTGAAATGTTAAAGC
AATGGTACTTTCAAGGTAATGACAATGTTTGACCTGCCATAAATCTCCGG
GGGGTACTTAAGCGAATGGAGGGTACGGCATGTCCCGCACTTAAGGAtac
cttttttttatttccatttccaaagtcccactaGGAGTTGGAAAAAATCA
CCCTTGTATTGTAAGGCGCACGCCTAACCAACTGAGCTAACCATGCATTC
TTGTTTCTGGGATTCTTTTGAAAGCTTTTCctcgaaaataaaaatttaga
ttttgtgACATAACTTTTTCATAAGCTTCAATAAGCAAAACCTGCCAGAA
AAACTTTTCACACTATTTTTATGCATATGCATACCTAAGGTATCCAATTA
ACTTACAATGGAGAACAAAAATGTTACAAAGTTCTGTTGCTTAGCTCATT
GTTTGATCTCCccggtatgtttttttttcaattgaaataaataaattgat
aAGGTACTCTTGTAACCAAAGCATAGTGATTTGCCCTGATAGGAGCTCAA
TGTACCCAGACTTATTTATTACACTAATACTCAAGTATTTAACGTgcaca
aaaaagacaaaaggaagaaaattaaaaaagaaaattaaaactagCAAGGG
GTGATTTgtatttgtatttatctttaaTCAAAGTTCATTTAAATAATATT
AATCCAATCTCTTCTTATATTAAAGCAAAATGTCTAGTCCAAGAAACCGT
TCAGTTTAATGGATACTATGGGTGCAGTTACTGTGAAATCGAGGGAGAAC
CCATAATGAAATTAAAAGGGACTAAATATGTCAAAACCTCGACAATTGTT
TTTCCTATGAAAACAATGGAAttacCATCAAAGcggacaaaagaaaaaac
aattgcACAAGCAATGGTATCATTGGAAAACAATTTAGTGGTAATCATGT
TTATCAAAACGTAATTTTATGAATAATCACATCAGAACGATATAGGTTAT
AGATAtttctaaaaattgttataaagcAAGATTTAAGATTTCATGTAGTA
TGAAAATCTACTtgtttgtgaaaatttaatggtttaCACTTTTaatgaaa
gcttttttccttttcaGGTAAACGGTATTCGAGGCTTGTCTGTATTGGGT
AAACTTACATATTATGATATTATCTGGGGAGTACCTTTTGATACCATGCA
TGGAGCTTTTCTGGGTGTAACAAAGTATAGTAGTTCTTTCACTCCTTTAA
TACAGGATGTATGTAATGTATTGTAATTtgatgtttatttttattttggt
tatttgaactgagtaatatcaagttaaaCATTTCAGATCTTAAAATATAT
GCAACCTAACAATTTGGCTAAAATAGATGGGAGAGTTTGCTTTGAAGCAT
AGGTATAAAGATGACTTTATCTTTGAAAACGTAGTTTACCTTTGAAATAA
gggaatttttaaaattcaagtTAGGATGGCCNAACCTAACAATTTGGCTA
AAATAGATGGGAGAGTTTGCTTTGAAGCATATGTATAAAGatgactttat
ttttgaaaacgtaGTTTACCTTTGAAATAAggcaatttttaaaattcagg
tTGGGATGGCATAAGGGGTTGGAGGGGTCTTTCCCATAATGAAGCTTAAA
TTctcttgttttattatttttagaagACTTCTAGGCTTGTGGTTTGACAC
TGAAAACCATAAAAATGCATGGTACCTTGGAAAGGTTTTGAAAACACTCG
ATTCTGTTTATCTCGCAATGACACCACCAGATGAAGTATCTAGGCAGCCA
AGAAGCATTGTAAAACATCGAAATTACTTTAAAGGTTATCAATTTAATAC
CAGATAATTATTTTCTTTGGGGTTTAGGGGTTTTGTCGAATATTAATTCT
TACATGTCAATTTCACCTCATTTCAACACTGAAAGGACACTTTAACGAGA
ATCCTTTTTATGTTTAATAAATTTTTATGTTTATCCTTTATTCAATTATA
CAATAAGATTATTTATAATTTGAGCTCCTCTTTGATGATTGTACTACCCT
ATAACATGTGATATTTTGAAAGGTTCaaatgttgtttattttttatttat
aaaatattaataataactagccggtacccggcgtcgcacgccggtttaac
tgtttgctgaacgcatttaaagtcctttggatgttgggaaggtggcataa
acacgatgaaatcaaaattaaagagaagaattctcttcaaagtttgactc
tatccctcctgggtgacgtatcttttaaccatattttgaaaaagattttt
gtggcaaaaatgatcagaaaacagaaaaagggcgccattcccaaattaca
ccataccggcgaccagcgacgtccgagacggctttgaaattagatttttt
tgNagtttttaccgccttttgaatttatttttaatgttgctgttgttcta
acaaacttgtcttgtgattattatgttttattttatatttgttcttttct
ttaacagattctgtttaaaagattttcttttgttttgaaaagaattcgaa
tgtctcaaatcaaataaggtcgttaattacattcgaaaacataaaacaaa
aaaaaagaaagaaaaaaaaagacaaagtcacatctatcaatcaaaacaaa
gtctttataaaacggcgcgaatctgatttaacacatttgtggagcaagaa
acaaaagtcatcttttaaaagaacaaaacattgcttgcgaaaacgaaagt
gacacacaaacaaaatgacatacagactacggctattaatatatagatta
ttaTAATATTAATAATAGATTTCCTTGAGCCTTACTCTTgtgtacctaat
agccggggtttggaaaaaaatctgaaaacttaATAAGTAGGAGGTTGGAA
tcaaaatgtcctgggtggagaatttttaaaaaggagactaatacagcaga
attaccttaaagaaattcaataatttaatttttgttattttttcaaattc
agcaaaCGAATTTCGTAATTGGCTATATTATTATGGACCAGTTATTATGC
TTGGTTTTCTGCCTGAACCATTTTACAGGTATACAGTCTATTCAAAAGAC
TATGGATTTTTAAATTGACTCCTCTTCAAAACTATAATAGTGATGTCACT
ATGGTTAGAAGGTTGAGGAACTTTCAAAGGTTTCTTTGTCTTCTAAAACT
TGTCTTTTGATTTAGATTTTGTGCAGCGTTCCCAAAAATAAGCAATTTTG
AACCCTTTCTTTGCGAAAAGGGGTGTAAAAATTAATGGTAAAGGATTTAA
TTACAGTGACTCAAATCCAGGGGGCAGACATTCTATATGAAAGCTAAAAA
GGCCTTTGAATTGTTTGATATCCAATTACATTTTATCGGTACTaaataat
taaattaatttACTTCATGAGAAGTTCAAGAATGGTATTTATTGATAATG
CGTGTCTCTTCtattttagtcattttctattCCTTGTCAAAGGGATATAT
ACTTTACAAAAGCTATCAATAacacaaaatgaaattgaatctGCTGAGGA
AGATTTAAAAGTATTCGTATTTCAAACAGATAAACTTTATGGTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00069620TCONS_00069620Clytia hemisphaericatranscript
TCONS_00069621TCONS_00069621Clytia hemisphaericatranscript
TCONS_00069622TCONS_00069622Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00069620-proteinTCONS_00069620-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:68749..73192 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15	1.13	0.85	0.16	22.03	15.97	15.6	16.35	12.94	13.38	15.54	13.74	12.47	12.29	7.29	8.25	7.03	8.77	7.74	7.07	6.61	5.28	3.49	4.79	14.39	16.11	5.42	2.04	3.69	3.54