TCONS_00002788-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002788-protein
Unique NameTCONS_00002788-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length221

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002788-protein ID=TCONS_00002788-protein|Name=TCONS_00002788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MKDLQAALTKKIILVGDSGCGKTCLLSSYLQNGNLPNKTYVPTIFEVYNM
DVVLQNTKCKFSIHDTAGLEAYDRLRPLSYPDTDMVVICFSVTDPDSLKN
VVDKWVPEIKNFCPGTPFVLVGTKCDLRDDVKTVSTLKRAKQFPVTTEQA
RKIAKQIKALKYIECSATQRFNTQHVFDTAMMKTVNSKPSLAATLNLLFS
CVKRHANKSIVHDPARESLIQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001516XLOC_001516Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002788TCONS_00002788Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 114..127
score: 49.07
coord: 10..31
score: 43.65
coord: 162..184
score: 27.95
coord: 52..74
score: 34.68
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 15..219
e-value: 8.5E-4
score: 5.6
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 7..187
e-value: 1.9E-9
score: 19.7
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 12..187
e-value: 4.2E-78
score: 275.4
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 11..187
e-value: 2.1E-11
score: 32.7
NoneNo IPR availableGENE3D3.40.50.300coord: 83..188
e-value: 8.0E-28
score: 96.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 9..81
e-value: 5.2E-15
score: 54.7
NoneNo IPR availableCDDcd00157Rhocoord: 11..181
e-value: 1.96018E-78
score: 234.36
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 11..183
e-value: 3.6E-46
score: 156.6
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 9..165
e-value: 7.8E-31
score: 105.0
IPR003578Small GTPase superfamily, Rho typePROSITEPS51420RHOcoord: 3..185
score: 21.701
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 10..180

Blast
[Close]
BLAST of TCONS_00002788-protein vs. Swiss-Prot (Human)
Match: RHOC (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.374e-60
Identity = 85/175 (48.57%), Postives = 120/175 (68.57%), Query Frame = 0 
Query:    6 AALTKKIILVGDSGCGKTCLLSSYLQNGNLPNKTYVPTIFEVYNMDVVLQNTKCKFSIHDTAGLEAYDRLRPLSYPDTDMVVICFSVTDPDSLKNVVDKWVPEIKNFCPGTPFVLVGTKCDLRDDVKTVSTLKRAKQFPVTTEQARKIAKQIKALKYIECSATQRFNTQHVFDTA 180
            AA+ KK+++VGD  CGKTCLL  + ++   P + YVPT+FE Y  D+ +   + + ++ DTAG E YDRLRPLSYPDTD++++CFS+  PDSL+N+ +KW PE+K+FCP  P +LVG K DLR D  T   L + KQ PV +E+ R +A +I A  Y+ECSA  +   + VF+ A
Sbjct:    2 AAIRKKLVIVGDGACGKTCLLIVFSKD-QFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 174
The following BLAST results are available for this feature:
BLAST of TCONS_00002788-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOC3.374e-6048.57Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]
back to top