TCONS_00003105-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003105-protein
Unique NameTCONS_00003105-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003105-protein ID=TCONS_00003105-protein|Name=TCONS_00003105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
RFFLMCYGFVNFACTLQSLLNLPNWRPRFKFYHWGLSLLGMFLCLALMFI
SSWYYALVAIFIAGFLYKYIEYRGAEKEWGDGLSGLSLSAARFGLLRMEG
STQTHTKNWRPQLLVLIDPPAGGVVLNQKSKKLITLASQMKAGRGLTIVG
AVIEGDYLKTSVEVDEYEEEIAAVMKKEKVKGFSSCVASSKSLDGLSYLI
QSAGLGALKPNTVILSWPHDWKNTSNWRSFIHSVRVVSEMRRAVIVAKEP
EKFPDLTSRESGYLDIWWIVQDGGLMLLMTFLLKQHKVWKKCNLRLFTVA
QITDNSIQIKNDLVQLMYNLRLTAEVHVIEMQDSDISAYTYERTLQAEQR
KEMLSKMKLSKKQSSKEAQTIFDKGHRSRSGSINGISSVASTGADASGGG
VVENRLATQSSVEESDGELGESAGSVQLMRLKSRPDEGNVRRMDTAVKIN
RLVQEKSSGSRLIMINLPKPPTIDEREFIYMEFIEALIEGLDQVFLVRGG
GHEVVTIYS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001725XLOC_001725Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003105TCONS_00003105Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004841AA-permease/SLC12A_dom
IPR018491SLC12_C
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004841Amino acid permease/ SLC12A domainPFAMPF00324AA_permeasecoord: 2..114
e-value: 7.3E-12
score: 44.5
IPR018491SLC12A transporter, C-terminalPFAMPF03522SLC12coord: 259..368
e-value: 1.0E-13
score: 51.0
coord: 132..252
e-value: 5.1E-15
score: 55.3
coord: 442..509
e-value: 3.2E-8
score: 32.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 356..429

Blast
[Close]
BLAST of TCONS_00003105-protein vs. Swiss-Prot (Human)
Match: S12A6 (Solute carrier family 12 member 6 OS=Homo sapiens GN=SLC12A6 PE=1 SV=2)

HSP 1 Score: 542.732 bits (1397), Expect = 0.000e+0
Identity = 268/515 (52.04%), Postives = 362/515 (70.29%), Query Frame = 0 
Query:    2 FFLMCYGFVNFACTLQSLLNLPNWRPRFKFYHWGLSLLGMFLCLALMFISSWYYALVAIFIAGFLYKYIEYRGAEKEWGDGLSGLSLSAARFGLLRMEGSTQTHTKNWRPQLLVLIDPPAGGVVLNQKSKKLITLASQMKAGRGLTIVGAVIEGDYLKTSVEVDEYEEEIAAVMKKEKVKGFSSCVASSKSLDGLSYLIQSAGLGALKPNTVILSWPHDWKNTSN---WRSFIHSVRVVSEMRRAVIVAKEPEKFP-DLTSRESGYLDIWWIVQDGGLMLLMTFLLKQHKVWKKCNLRLFTVAQITDNSIQIKNDLVQLMYNLRLTAEVHVIEMQDSDISAYTYERTLQAEQRKEMLSKMKLSKKQSSKEAQTIFDKGHRSRSGSINGISSVASTGADAS-GGGVVENRLATQSSVEESDGELGESAGSVQLMR--LKSRPDEGNVRRMDTAVKINRLVQEKSSGSRLIMINLPKPPTIDEREFIYMEFIEALIEGLDQVFLVRGGGHEVVTIYS 509
            FFLMCY FVN AC LQ+LL  PNWRPRF++YHW LS +GM +CLALMFISSWYYA+VA+ IAG +YKYIEY+GAEKEWGDG+ GLSLSAARF LLR+E     HTKNWRPQLLVL+        L+ K  +L+T ASQ+KAG+GLTIVG+VI G++L+   E    E+ I  +M+ EKVKGF   V ++K  +G+S+LIQS GLG +K NTV++ WP+ W+ + +   W++FI +VRV +    A++VAK    FP ++     G +D+WWIV DGG+++L+ FLLKQHKVW+KC++R+FTVAQ+ DNSIQ+K DL   +Y+LR+ AEV V+EM DSDISAYTYERTL  EQR +ML  M+LSK +  +EAQ + D+         N +  + S G+D        + ++    + ++     G+ A S++  +  L  RPD+ NVRRM TAVK+N ++  KS  ++L+++N+P PP   E +  YMEF+E L EGL++V LVRGGG EV+TIYS
Sbjct:  649 FFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLE-EGPPHTKNWRPQLLVLLKLDED---LHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGEALAAEQTIKHLMEAEKVKGFCQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVWWIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDR---------NSMLRLTSIGSDEDEETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS 1150
The following BLAST results are available for this feature:
BLAST of TCONS_00003105-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S12A60.000e+052.04Solute carrier family 12 member 6 OS=Homo sapiens ... [more]
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