TCONS_00003696-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003696-protein
Unique NameTCONS_00003696-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003696-protein ID=TCONS_00003696-protein|Name=TCONS_00003696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MGTLKEKECLQRSRAACLENIRNLNVWGSGLHDISIVQQLVNLEVLNLSV
NNVYTLQNLSHCPRIKEIYLRKNKISDLKEIKFLRNLPNLQVLWIADNPC
SETNETYRYTVLKNLPNLIKLDSSVVTQEDRELAQERGILYENDIELPCF
DGLELDKTLTTEALRSFFKNQKSVNEDIPNEEYEKVEVAEITLPPDEELP
KDNNPSENNNNIENISGPPLVEDSLKEVLPAQEEKDLQNTSTIENEASST
TESSLPRSLSRKSNTLAAVLLLINDLNEDELEEVQSVTKQMLDAKSSKVT
ESILVD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002056XLOC_002056Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003696TCONS_00003696Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14580LRR_9coord: 40..136
e-value: 5.2E-9
score: 35.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..260
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 3..132
e-value: 1.8E-21
score: 75.7
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 16..129
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 64..85
score: 6.749
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 89..110
score: 4.516
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 42..63
score: 8.328

Blast
[Close]
BLAST of TCONS_00003696-protein vs. Swiss-Prot (Human)
Match: CU002 (Protein C21orf2 OS=Homo sapiens GN=C21orf2 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.098e-40
Identity = 101/298 (33.89%), Postives = 147/298 (49.33%), Query Frame = 0 
Query:    4 LKEKECLQRSRAACLENIRNLNVWGSGLHDISIVQQLVNLEVLNLSVNNVYTLQNLSHCPRIKEIYLRKNKISDLKEIKFLRNLPNLQVLWIADNPCSETN-ETYRYTVLKNLPNLIKLDSSVVTQEDRELAQERGILYENDIELPCFDGLELDKTLTTEALRSFFKNQKSVNEDIPNEEYEKVEVAEITLPPDEELPKDNNPS-----ENNNNIENISGPPLVEDSLKEVL-PAQEEKDLQNTSTIENEASSTTESSLPRSLSRKSNTLAAVLLLINDLNEDELEEVQSVTKQMLDA 294
            L  K  L R++A+ L ++R LN WGS L DISI Q++ +LEV+ LSVN++ TL+ +S C R+ E+YLR+N+I  L E+ +L+ LP L+VLW+A+NPC  T+   YR TVL+ LP L KLD+  VT+E                        EL + L+                          E  EIT  P+ E      P       + ++       PL  DS +E    AQ+E+ L+  S  +  + S  ++S   S  R  N L A+LLL+ +L+ + LE VQ      L A
Sbjct:    3 LTRKMVLTRAKASELHSVRKLNCWGSRLTDISICQEMPSLEVITLSVNSISTLEPVSRCQRLSELYLRRNRIPSLAELFYLKGLPRLRVLWLAENPCCGTSPHRYRMTVLRTLPRLQKLDNQAVTEE------------------------ELSRALS--------------------------EGEEITAAPEREGTGHGGPKLCCTLSSLSSAAETGRDPL--DSEEEATSGAQDERGLKPPSRGQFPSLSARDAS---SSHRGRNVLTAILLLLRELDAEGLEAVQQTVGSRLQA 245
The following BLAST results are available for this feature:
BLAST of TCONS_00003696-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CU0023.098e-4033.89Protein C21orf2 OS=Homo sapiens GN=C21orf2 PE=1 SV... [more]
back to top