Growth factor receptor bound protein (polypeptide) - C. hemisphaerica

Overview


Name	Growth factor receptor bound protein
Unique Name	TCONS_00003763-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	611

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003763-protein ID=TCONS_00003763-protein|Name=Growth factor receptor bound protein|organism=Clytia hemisphaerica|type=polypeptide|length=611bp
MDATDLDAVLENISLLIEDMEENINETKKSRQKLLTKTQNTTLQTNNNDE
EPIREHTPPSPKSTAPTPPSRPRDIPPVIRHDFTHKSTSEMEPFETSHIA
SIDNAVHYDELQKAKEASGSKNNIIKHPLNDHRGRRLCCSAENSPILSRS
MISRQNIPSPREQRTNSITPRLVLQNIDKFDVTVQCPDGNLFKAGVFKAW
TSFQLAWKIAHVRGMAEKIALIIEEHISDLHIKRLIEDHEIIHKVTTNWA
PDSNNILVMSERISKYDLFNEPADYLPIEMFDTRSDFIEQPKNVRRSSLL
RSIMTADQTPDLQGWVFVKAFDKQKWKKRFLRIKDKIVYTCETDDENSEI
KAIYRCDECYFYDCLAEFQVAHKTPYPHCFCIIPKVVTSWHEIKCFCTTS
ERHLIGWMSGFRFAKYGQQLYTNFREAMVKEANLRRTNSARVSLLFRRSF
GDNNNTKDNKATVDFSGQNGRVISDPMEALKIQSEMAFEIPKQTKRSSGT
FPPSSIRQNVLDKKIWYHGKLDREQATKKLKKHGSKEGLFLVRESNSTHG
NLVLTVITKKGRVSHHQIFKNKNLYGIEHGPQFNSLELLIEAYHSGAVEG
ADFSLKKACPI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002098	XLOC_002098	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003763	TCONS_00003763	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000980	SH2
IPR001849	PH_domain
IPR011993	PH_dom-like
IPR015042	BPS-dom
IPR029071	Ubiquitin-rel_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..77
None	No IPR available	CDD	cd00173	SH2	coord: 516..593 e-value: 1.42624E-20 score: 85.9702
IPR000980	SH2 domain	PRINTS	PR00401	SH2DOMAIN	coord: 516..530 score: 42.35 coord: 562..572 score: 30.98 coord: 537..547 score: 59.03 coord: 582..596 score: 33.17
IPR000980	SH2 domain	SMART	SM00252	SH2_5	coord: 514..599 e-value: 2.1E-23 score: 93.8
IPR000980	SH2 domain	GENE3D	3.30.505.10		coord: 504..611 e-value: 2.2E-23 score: 81.9
IPR000980	SH2 domain	PFAM	PF00017	SH2	coord: 516..593 e-value: 3.0E-18 score: 65.6
IPR000980	SH2 domain	PROSITE	PS50001	SH2	coord: 516..609 score: 18.086
IPR000980	SH2 domain	SUPERFAMILY	55550	SH2 domain	coord: 508..609
IPR001849	Pleckstrin homology domain	SMART	SM00233	PH_update	coord: 310..418 e-value: 1.4E-7 score: 41.2
IPR001849	Pleckstrin homology domain	PFAM	PF00169	PH	coord: 312..414 e-value: 8.4E-7 score: 29.4
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 301..419 e-value: 1.8E-9 score: 36.9
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 302..423
IPR015042	BPS (Between PH and SH2) domain	PFAM	PF08947	BPS	coord: 463..487 e-value: 1.7E-5 score: 24.4
IPR029071	Ubiquitin-related domain	SUPERFAMILY	54236	Ubiquitin-like	coord: 176..269

Blast

[Close]

BLAST of Growth factor receptor bound protein vs. Swiss-Prot (Human)
Match: GRB10 (Growth factor receptor-bound protein 10 OS=Homo sapiens GN=GRB10 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.524e-39
Identity = 113/422 (26.78%), Postives = 196/422 (46.45%), Query Frame = 0

Query:  175 QNIDKFDVTVQCPDGNLFKAGVFKAWTSFQLAWKIAHVRGMAEKIALIIEEHISDLHIKRLIEDHEIIHKVTTNWAPDSNNILVMSERISKYDLFNEPADYLPIEMFDTRSDFIEQPKNVRRSSLLRSIMTADQTPDLQGWVFVKAFDKQKWKKRFLRIKDKIVY--TCETDDENSEIKAIYRCDECYFYDCLAEFQVAHKTPYPHCFCIIP-KVVTSWHEIKCFCTTSERHLIGWMSGFRFAKYGQQLYTNFREAMVKEANLRRTNSARVSLLFRRSFGDNNNTKDNKATVDFSGQNGRVISDPMEALKIQSEMAFEIPKQTKR-----SSGTFPPSSIRQNVLDKKIWYHGKLDREQATKKLKKHGSKEGLFLVRESNSTHGNLVLTVITKKGRVSHHQIFKNKNLYGIE-HGPQFNSLE 587
            Q   K DV V   DG      +    T+  L   + +     +  +  + EH   L ++R +EDHE++ +V +  A +S    +  +  +KY+ F  P ++ P +M         Q  N  ++ LL++ + +   P++QG++ VK   K+ WKK ++ ++   +Y  T  T  E   ++ +   ++   +  +A  +  +  P  H  CI P KV     E++  C   E+    WM+ FR  KYG  LY N+R    ++A L   ++   S+           ++++   +DFSGQ GRVI +P EA     E      K++ R     S     PS++   +   + W+HG++ RE++ + +K+ G  +GLFL+R+S S     VLT+        HHQ  KN  +   E  G  F SL+
Sbjct:  163 QAAAKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHCVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESK--FLFRKNYAKYEFFKNPMNFFPEQMVTWC-----QQSNGSQTQLLQNFLNSSSCPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSKEPRHLQLLADLEDSNIFSLIAG-RKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTCWMTAFRLLKYGMLLYQNYRIPQQRKALLSPFSTPVRSV-----------SENSLVAMDFSGQTGRVIENPAEAQSAALEEGHAWRKRSTRMNILGSQSPLHPSTLSTVIHRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLC-------HHQKIKNFQILPCEDDGQTFFSLD 558

The following BLAST results are available for this feature:

BLAST of Growth factor receptor bound protein vs. Swiss-Prot (Human)

BLAST of Growth factor receptor bound protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRB10	1.524e-39	26.78	Growth factor receptor-bound protein 10 OS=Homo sa...	[more]

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Growth factor receptor bound protein (polypeptide) - C. hemisphaerica