TCONS_00003874-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003874-protein
Unique Name	TCONS_00003874-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	600

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003874-protein ID=TCONS_00003874-protein|Name=TCONS_00003874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=600bp
MQSYGHDSKANLLKSNASATDDDEEEVYYKKDGYQSASATDEFPIRGPVK
IECRQSFTDCSNVFKAFIGSAVIGLPFAVSQAGIGLTIIGIAIIGVITDH
CCNKIVKCKQMVIANIQQERQTQGVDAQSIAEESKTLGRTLSFGQIGKAC
LGKPGVLIVNTSIMVTQFGFTIGYFIFMGNTLRSLLKYWLVPDAIPFHNT
TLPTNSTLQTTFSPNFTTTMIPITTLPNVSTPSNLTKFYPTVDLGVVNST
TILNFLHHHITNLHHVVTTAVKDPWSPSNLIKNSTVTFGVLILFPLPLLI
GIAFVRNLRKLGPISVIANISVTGGAAATVIYMFAKMPDLRASDLHWFKF
STFPVFFGQVTSAFEGIGTVIPIEGSMAENRSKYPAFLHISLVFLCFILS
GFGITGYLRFGEKTCQIVTQNLRGDMAIILQIFLFIGVLLTYPLQIYPNI
QIVEHLFVKFRRWRIGRQRRYEVMRRAAENESLLDSTEDKPIEVKNVKLK
KWEGNIIRAVLVAFTAACALAFRSQFAYIAALTGSIGSSLLSYILPCMFD
LALRKRKMSTGAKIVNIFLIVFGVVLGLMGMVVTLMEIAESFEKGHQVHC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002177	XLOC_002177	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003874	TCONS_00003874	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013057	AA_transpt_TM

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 291..584 e-value: 1.7E-38 score: 132.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Blast

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BLAST of TCONS_00003874-protein vs. Swiss-Prot (Human)
Match: S36A1 (Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.172e-20
Identity = 85/295 (28.81%), Postives = 133/295 (45.08%), Query Frame = 0

Query:  296 LPLLIGIAFVRNLRKLGPISVIANISVTGGAAATVIYMFAKMPDLRASDL--HWFKFSTFPVFFGQVTSAFEGIGTVIPIEGSMAENRSKYPAFLHISLVFLCFILSGFGITGYLRFGEKTCQIVTQNLRGD-MAIILQIFLFIGVLLTYPLQIYPNIQIVEHLFVKFRRWRIGRQRRYEVMRRAAENESLLDSTEDKPIEVKNVKLKKWEGNIIRAVLVAFTAACALAFRSQFAYIAALTGSIGSSLLSYILPCMFDLALRKRKMSTGAKIVNIFLIVFGVVLGLMGMVVTLME 587
            LP L+ + F+RNLR L   S++ANI++         ++  ++PD     L   W    T+P+FFG    +FEGIG V+P+E  M + R K+P  L++ +V +  +    G  GYL+FG      +T NL    +   +++   IG+  TY LQ Y   +I+   FV                 RA E+  L+            V L       +R VLV  T   A+    +   + +L GS+ SS L+ I+P + ++       S G   + IF      +LG +G VV   E
Sbjct:  202 LPFLVLLVFIRNLRALSIFSLLANITMLVSLVMIYQFIVQRIPDPSHLPLVAPW---KTYPLFFGTAIFSFEGIGMVLPLENKMKDPR-KFPLILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVPAEIIIPFFVS----------------RAPEHCELV------------VDL------FVRTVLVCLTCILAILI-PRLDLVISLVGSVSSSALALIIPPLLEVT---TFYSEGMSPLTIFKDALISILGFVGFVVGTYE 454

The following BLAST results are available for this feature:

BLAST of TCONS_00003874-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003874-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S36A1	1.172e-20	28.81	Proton-coupled amino acid transporter 1 OS=Homo sa...	[more]

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TCONS_00003874-protein (polypeptide) - C. hemisphaerica