TCONS_00004214-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004214-protein
Unique NameTCONS_00004214-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004214-protein ID=TCONS_00004214-protein|Name=TCONS_00004214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp
MDDKRSMKEKGKFTIDELVLCYEPDPMKAKVLYDAKVLDIDLTKDDKGKK
VNEYYIHFQGWNKSWDRWILEDKILKDNEASRGMQSKLLKEAIKPKKRKR
KITKGENSNDPSEEKEESDKQTTEVEEEIKVIQLPPVSLDIPKVLANKLE
DDCYNIKRKKKLIHLPRIPSVATILSDYYEYCKKIIKKPEEKDTSLTIVE
ELIDGLTTYFNFYLNTLLLYNFEREQYLKFFPLQKPPPHLIALHTATPPV
TPLLSPKLSSIVAMEKATTSKESSRSNSRSSSFSEDAPLSLVGEKVVPRP
RGRPSRRKSNIEQDSAKRKRTDSGSSKTPLSPMSPVDPPTPLRENSSERP
TKRETRSLRQNSLSRSQEVKEEMIKTEIKIEQKESTDEQGTGSASRLRRS
TRVPKIINTPPPPPPSAPALKRIIDDSIQPWSLPPKNNEVVKEESQPDLL
KPLTVQTDMPHPPVQPPFKDHSFMMYPIGTDKKTTPMQVYGPEHFLRLFV
KLPVLLASSSIEQPKLSVILRNVSKLLDYLSTRLDLFDESVYSESVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002349XLOC_002349Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004214TCONS_00004214Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR025995Tudor-knot
IPR026541MRG_dom
IPR016197Chromodomain-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 366..386
NoneNo IPR availableGENE3D2.30.30.140coord: 1..132
e-value: 7.0E-21
score: 73.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..418
NoneNo IPR availableCDDcd00024CHROMOcoord: 35..79
e-value: 8.7286E-5
score: 39.5547
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 32..92
e-value: 9.5E-4
score: 28.5
IPR025995RNA binding activity-knot of a chromodomainPFAMPF11717Tudor-knotcoord: 20..74
e-value: 3.7E-10
score: 39.4
IPR026541MRG domainPFAMPF05712MRGcoord: 115..543
e-value: 2.1E-42
score: 144.6
IPR026541MRG domainPROSITEPS51640MRGcoord: 133..547
score: 35.665
IPR016197Chromo domain-likeSUPERFAMILY54160Chromo domain-likecoord: 5..156

Blast
[Close]
BLAST of TCONS_00004214-protein vs. Swiss-Prot (Human)
Match: MS3L1 (Male-specific lethal 3 homolog OS=Homo sapiens GN=MSL3 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.905e-46
Identity = 107/312 (34.29%), Postives = 165/312 (52.88%), Query Frame = 0 
Query:   10 KGKFTIDELVLCYEPDPMKAKVLYDAKVLDIDLTKDDKGKKVNEYYIHFQGWNKSWDRWILEDKILKDNEASRGMQSKLLKEAIK-----PKKRKRKITKGENS---NDPSEEKEESDKQT------------------------TEVEEEIKV-----IQLPPVSLDIPKVLANKLEDDCYNIKRKKKLIHLPRIPSVATILSDYYEYCK----------------------KIIKKPEEKDTSLTIVEELIDGLTTYFNFYLNTLLLYNFEREQYLK------FFPLQKPPPHLIALHTATPPVTPLLSP 256
            K KF   E VLC+EPDP KA+VLYDAK++D+ + KD+KG+K+ EY IHF GWN+SWDRW  ED +L+D + +R +Q KL ++A+       +K+KR    G +S     P+EEK+E+D+ +                        TEV+EE ++     ++   ++++IP+VL  +LEDDCY I R+K+L+ LP   ++ TIL  Y ++                         +   P EK+  L   +E++DGL   F++ L  +LLY +E+ QY K      F P+++             P  PLL+P
Sbjct:    8 KFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVARLRSTGRKKKRCRLPGVDSVLKGLPTEEKDENDENSLSSSSDCSENKDEEISEESDIEEKTEVKEEPELQTRREMEERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAEKNVDL--CKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKFFLPIKESATSTNRSQEELSPSPPLLNP 317
The following BLAST results are available for this feature:
BLAST of TCONS_00004214-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MS3L14.905e-4634.29Male-specific lethal 3 homolog OS=Homo sapiens GN=... [more]
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