TCONS_00004282-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004282-protein
Unique NameTCONS_00004282-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004282-protein ID=TCONS_00004282-protein|Name=TCONS_00004282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MEDTDSSGDHRRSGMLLDEDFNVYEEQKETDEELSKAALQEIAAGDTTGS
APTSPTSQPEESKEKPERPPVPIRVSSRQPDPNVLSVEQLEKEYADIARY
KIFQLAGDDLTGRPVIAFSACRLPVRNLIDHQKLFNFLKLMLDQYVENDY
TIVYFHYGLNSQNKPSLKWLLNIYRELERKYRKNLKALYIVHPSNFIKII
FNMFYPLISTKFGRKINNIKKLDELAPHIRLDQLDIPKEVRDHDEKITVR
MKPSNNSSIFHTKLETPKTQVFGISLKTLKERTGEDIPEVVRSTVQFIEQ
NALDVEGIFRRSPHANSVKDVSQKYNHGEQVTFSSDEVHLPAAILKKFLR
ELPDPLLTFELYDQVMDACSLPEEERLSFTQDMMKNSMAEENRIILSYLM
HFLQKVVDHSSANRMTSGSLAIVFGPNILWSRSEASTLTSMSKVNSFCKY
LIDNTHLIFDESVA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002378XLOC_002378Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004282TCONS_00004282Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR001251CRAL-TRIO_dom
IPR008936Rho_GTPase_activation_prot
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000198Rho GTPase-activating protein domainSMARTSM00324RhoGAP_3coord: 285..456
e-value: 9.4E-49
score: 178.0
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 288..434
e-value: 1.7E-41
score: 141.4
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 274..459
score: 40.642
IPR001251CRAL-TRIO lipid binding domainSMARTSM00516sec14_4coord: 93..245
e-value: 3.0E-20
score: 83.3
IPR001251CRAL-TRIO lipid binding domainPFAMPF13716CRAL_TRIO_2coord: 112..245
e-value: 4.5E-38
score: 130.4
IPR001251CRAL-TRIO lipid binding domainGENE3D3.40.525.10coord: 91..227
e-value: 3.6E-36
score: 124.0
IPR001251CRAL-TRIO lipid binding domainPROSITEPS50191CRAL_TRIOcoord: 93..248
score: 13.191
IPR001251CRAL-TRIO lipid binding domainCDDcd00170SEC14coord: 100..237
e-value: 1.82406E-24
score: 97.841
IPR001251CRAL-TRIO lipid binding domainSUPERFAMILY52087CRAL/TRIO domaincoord: 93..234
NoneNo IPR availableGENE3D1.10.555.10coord: 228..464
e-value: 1.4E-62
score: 210.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..82
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 268..459

Blast
[Close]
BLAST of TCONS_00004282-protein vs. Swiss-Prot (Human)
Match: RHG01 (Rho GTPase-activating protein 1 OS=Homo sapiens GN=ARHGAP1 PE=1 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 1.149e-117
Identity = 174/369 (47.15%), Postives = 252/369 (68.29%), Query Frame = 0 
Query:   94 YADIARYKIFQLAGDDLTGRPVIAFSACRLPVRNLIDHQKLFNFLKLMLDQYVENDYTIVYFHYGLNSQNKPSLKWLLNIYRELERKYRKNLKALYIVHPSNFIKIIFNMFYPLISTKFGRKINNIKKLDELAPHIRLDQLDIPKEVRDHDEKITVRMKPSNNSSIFHTKLETPKTQVFGISLKTLKERTGED--IPEVVRSTVQFIEQNALDVEGIFRRSPHANSVKDVSQKYNHGEQVTFSS-DEVHLPAAILKKFLRELPDPLLTFELYDQVMDACSLPEEERLSFTQDMMKNSMAEENRIILSYLMHFLQKVVDHSSANRMTSGSLAIVFGPNILWSRSEASTLTSMSKVNSFCKYLIDNTHLIF 459
            Y DIAR++I ++AGDD  GR +I FSACR+P  + +DH KL  +LK  LDQYVE+DYT++Y H+GL S NKPSL WL + YRE +RKY+KN+KALYIVHP+ FIK +  +F PLIS KFG+KI  +  L EL+ H++L+QL IP++V  +D+ +    K    +            Q FG+SL+ L+E+  E   IP V+R TV +++ +AL  EGIFRRS +   V++V QKYN G  V F   +E+HLPA ILK FLRELP+PLLTF+LY  V+   ++ E +R+  T  +++ ++ EEN  +L +L  FL ++  HS  N+MT+ +LA+VFGPN+LW++  A TL +++ +N+F K+L+D+   +F
Sbjct:   64 YYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ-TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELF 431
The following BLAST results are available for this feature:
BLAST of TCONS_00004282-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHG011.149e-11747.15Rho GTPase-activating protein 1 OS=Homo sapiens GN... [more]
back to top