TCONS_00004303-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004303-protein
Unique Name	TCONS_00004303-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	459

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004303-protein ID=TCONS_00004303-protein|Name=TCONS_00004303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
NFSLFLLLDRLSFNGYQVKVKKCERWFICLMASLRRRVFVILFWVGVFGI
LGIHLLLSKDHQQNGHGHTRKNFPRHRTVDEVEEPTEKIVNIRFERLAKD
NQHENEFNKNSPQLGIGEEDQNEDESRYINITSDEMFLNVLAGSPKVKIS
PTLEENMRLKEQIENLKHEIEVMKKNKKQLQELSKRLIAQQKGQQYFPKL
DPAVPWVFAITPTHTRYTQKADLVRLSQTLQHVTNLHWIIVEDSKSSTQV
VHNVLLDSGLSFTHLYTKTPVAMQRKRGEKYNKHHRGVPQRNLGLKWIRR
NIKPQKTPGVVYFMDDDNTYHKRIFDEMRWTQKVSAWPVALTGAARFQGP
IVSKGKVIGFHSNWALDRKFPLDMAAFAVNLKLLVEDYPDIGFDESAKRG
HLEPTFLSTITTMNELEPLADNCTKVLVWHTRTDVPKESIRGEKELIRQG
KQSDPNIET

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002387	XLOC_002387	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004303	TCONS_00004303	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029044	Nucleotide-diphossugar_trans
IPR005027	Glyco_trans_43

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 149..190
None	No IPR available	GENE3D	1.20.5.1180		coord: 138..188 e-value: 9.9E-6 score: 25.3
None	No IPR available	SUPERFAMILY	111469	Geminin coiled-coil domain	coord: 137..186
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 203..452 e-value: 1.2E-83 score: 279.6
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 205..440
IPR005027	Glycosyl transferase, family 43	PFAM	PF03360	Glyco_transf_43	coord: 226..433 e-value: 2.0E-66 score: 223.6
IPR005027	Glycosyl transferase, family 43	CDD	cd00218	GlcAT-I	coord: 205..434 e-value: 1.10131E-100 score: 302.293

Blast

[Close]

BLAST of TCONS_00004303-protein vs. Swiss-Prot (Human)
Match: B3GA3 (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Homo sapiens GN=B3GAT3 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 6.136e-89
Identity = 136/265 (51.32%), Postives = 175/265 (66.04%), Query Frame = 0

Query:  204 VPWVFAITPTHTRYTQKADLVRLSQTLQHVTNLHWIIVEDSKSSTQVVHNVLLDSGLSFTHLYTKTPVAMQRKRGEKYNKHHRGVPQRNLGLKWIR---------RNIKPQKTPGVVYFMDDDNTYHKRIFDEMRWTQKVSAWPVALTGAARFQGPIVSKGKVIGFHSNWALDRKFPLDMAAFAVNLKLLVEDYPDIGFDESAKRGHLEPTFLSTITTMNELEPLADNCTKVLVWHTRTDVPKESIRGEKELIRQGKQSDPNIET 459
            +P ++ +TPT+ R  QKA+LVRLSQTL  V  LHW++VED++  T +V  +L  SGL FTHL   TP A + + GE    H RGV QRN  L W+R         ++  P  T GVVYF DDDNTY + +F+EMRWT+ VS WPV L G  RF+GP V  G+V+GFH+ W   R FP+DMA FAV L LL+ D P+  FD +A RGHLE + LS +    +LEP A NCT+VLVWHTRT+ PK  ++ E++L RQG+ SDP IE 
Sbjct:   74 LPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPSRPFPVDMAGFAVALPLLL-DKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPK--MKQEEQLQRQGRGSDPAIEV 335

The following BLAST results are available for this feature:

BLAST of TCONS_00004303-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004303-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
B3GA3	6.136e-89	51.32	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]

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TCONS_00004303-protein (polypeptide) - C. hemisphaerica