TCONS_00004490-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004490-protein
Unique NameTCONS_00004490-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004490-protein ID=TCONS_00004490-protein|Name=TCONS_00004490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=587bp
MKGFLFILLVVFIIYSQAQTCPEQCQCSRLKWTCGGQNINDTVLLEIART
GDPLTAEELILKVNLITDFPAEAFTKFSKLEIIELGQNLLTKPPANVSDY
IPSVHRFSIDQNKISKISRDDFLGYQNIKIXISKISRNDFLGYQNIKILD
IFSNTLTEIEPNIFENLQNLQKVFAENNQIEMLKNGTLNGAENLLWISFD
GNALGKIERDAFAAATKLERLWLSYNKLTSLPEGVFRNQRLVILKMKSNQ
FTDFPPKTFNSLSVDLTNNSLTTLQKNWFALKPNELYLEQNPLHCDCALY
NTMQYFFNGNDKFLIFGNCKTPAELKDDDIYEDLYRTNKLKCTACSLNEC
QNNSTCKVVDKLDYTCVCSEKNQGRFCQFENACLDNPCQHNGTCLKIVDT
FMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLKIVDTFMCNCSSGFLGE
KCEIEKPCYFNNPCQNNGTCLEIVDTFMCNCSSGFLGEKCGIEKACYFNN
PCQNNGTCQPLDETSDKYQCLCVGGYSGQNCEILGEETKIKIGYIILIIL
VALALIALLLVILYLRRRTTKKAEITEDTPLKSTQNT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002530XLOC_002530Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004490TCONS_00004490Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001881EGF-like_Ca-bd_dom
IPR000742EGF-like_dom
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 239..261
e-value: 220.0
score: 2.3
coord: 143..166
e-value: 170.0
score: 3.2
coord: 167..190
e-value: 9.9
score: 13.3
coord: 216..238
e-value: 0.0065
score: 25.7
coord: 101..124
e-value: 370.0
score: 0.4
IPR001881EGF-like calcium-binding domainSMARTSM00179egfca_6coord: 420..453
e-value: 0.043
score: 12.9
coord: 458..491
e-value: 0.13
score: 9.1
coord: 496..532
e-value: 0.98
score: 1.9
coord: 380..415
e-value: 0.015
score: 16.5
IPR000742EGF-like domainSMARTSM00181egf_5coord: 457..491
e-value: 8.1E-4
score: 28.7
coord: 419..453
e-value: 2.6E-5
score: 33.6
coord: 344..378
e-value: 7.6
score: 15.5
coord: 495..532
e-value: 1.1E-4
score: 31.5
coord: 382..415
e-value: 8.9E-6
score: 35.2
IPR000742EGF-like domainPFAMPF00008EGFcoord: 462..487
e-value: 6.6E-6
score: 26.2
coord: 424..449
e-value: 1.6E-5
score: 25.0
coord: 383..411
e-value: 1.3E-7
score: 31.7
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 454..491
score: 15.523
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 416..453
score: 15.951
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 379..415
score: 17.897
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 492..532
score: 18.047
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 343..378
score: 11.074
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 11..128
e-value: 5.0E-10
score: 38.2
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 129..313
e-value: 1.0E-27
score: 96.0
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 21..306
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 169..228
e-value: 6.0E-7
score: 29.0
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 193..214
score: 4.747
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 169..190
score: 4.709
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 103..124
score: 5.163
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 217..238
score: 8.043
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 145..166
score: 6.149
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 79..100
score: 4.508
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 240..261
score: 4.963
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 55..76
score: 4.801
NoneNo IPR availableGENE3D2.10.25.10coord: 493..534
e-value: 3.0E-9
score: 36.2
NoneNo IPR availableGENE3D2.10.25.10coord: 343..380
e-value: 7.6E-6
score: 25.6
NoneNo IPR availableGENE3D2.10.25.10coord: 455..492
e-value: 1.2E-8
score: 34.2
coord: 417..454
e-value: 5.8E-10
score: 38.4
NoneNo IPR availableGENE3D2.10.25.10coord: 381..416
e-value: 8.9E-12
score: 44.4
NoneNo IPR availableCDDcd00054EGF_CAcoord: 381..415
e-value: 2.40597E-4
score: 38.0014
NoneNo IPR availableCDDcd00054EGF_CAcoord: 458..490
e-value: 1.45373E-5
score: 41.8534
NoneNo IPR availableCDDcd00054EGF_CAcoord: 496..532
e-value: 1.22546E-5
score: 41.8534
NoneNo IPR availableCDDcd00054EGF_CAcoord: 420..453
e-value: 1.98792E-5
score: 41.4682
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 422..455
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 499..533
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 460..493
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 381..418
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 479..490
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 479..490
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 520..531
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 441..452
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 403..414
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 366..377
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 403..414
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 441..452
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 520..531

Blast
[Close]
BLAST of TCONS_00004490-protein vs. Swiss-Prot (Human)
Match: SLIT2 (Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.701e-37
Identity = 117/384 (30.47%), Postives = 180/384 (46.88%), Query Frame = 0 
Query:  168 QNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERLWLSYNKLTSLPEGVFRN-QRLVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKNWFALKPNELYLEQNPLHCDCALYNTMQYFFNGNDKFLIFGNCKTPAELKDDDIY---------EDLYRTNKL-KCTACSLNECQNNSTCKVVDKLD-YTCVCSEKNQGRFCQFE-NACLDNPCQHNGTC-LKI--VDTFMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLKIVDTFMCNCSSGFLGEKCEIEKPCYFN---NPCQNNGTCLEIVDTFMCNCSSGFLGEKCGIEKACYFNNPCQNNGTCQPLDETSDKYQCLCVGGYSGQNCE 532
            +++ +++ + NQ  ++    L+  ++L  I    N +  +   +F+  T+L  L LSYN+L  +P   F   + L +L +  N  +  P   FN LS                AL  + L +  NPL+CDC +   +  +     K      C  P E+ D  +          +     N L KC  C  N C+N+ TC   D +D Y C C    +G+ C    +AC+ NPC+H GTC LK    D F C C+ GF GE CE+      +N C+NN TC+  ++ + C C   + GE CE EK  +     NPCQ++  C+     F C+C+ G++GE C I+     +N C+N   C    +  + Y C+C  GYSG  CE
Sbjct:  754 RDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS----------------AL--SHLAIGANPLYCDCNM-QWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNS-DPVDFYRCTCPYGFKGQDCDVPIHACISNPCKHGGTCHLKEGEEDGFWCICADGFEGENCEVNVDDCEDNDCENNSTCVDGINNYTCLCPPEYTGELCE-EKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPGYVGEHCDIDFDDCQDNKCKNGAHCT---DAVNGYTCICPEGYSGLFCE 1112

HSP 2 Score: 103.99 bits (258), Expect = 5.933e-23
Identity = 102/397 (25.69%), Postives = 163/397 (41.06%), Query Frame = 0 
Query:  143 YQNIKILDIFSNTLTEIEPNIFENLQNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERL--------------WLS-YNKLTSLPEGVFR------NQRLVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKNWFAL--KPNELYLEQNPLHCDCALYNTMQYFFNGND-----KFLIFGNCKTPAELKDDDIYEDLY----------RTNKLKCTACSLNECQNNSTCKVVDKLD-YTCVCSEKNQGRFCQFE-NACLD--NPCQHNGTCLKIVDTFMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLKIVDTFMCNCSSGFLGEKCEIEKPCYF-------NNPCQNNGTCLEIVDTFMCNCSSGFLGEKC 490
            Y+++ ++D+ +N ++ +    F N+  L  +    N++  +   T +G ++L  +S  GN +  +   AF   + L  L              WLS + K      G+ R          ++L   S +FT   P   N L+    N  L+   KN       P + Y       C C       Y F G D        I   CK        +  ED +             ++    C  N+C+NNSTC  VD ++ YTC+C  +  G  C+ + + C    NPCQH+  C+     F C+C+ G++GE C+I+     +N C+N   C   V+ + C C  G+ G  CE   P          N  CQN   C+  ++  +C C  G+ GEKC
Sbjct:  776 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAK--CNPCLSNPCKNDGTCNSDPVDFY------RCTCP------YGFKGQDCDVPIHACISNPCKHGGTCHLKEGEEDGFWCICADGFEGENCEVNVDDCEDNDCENNSTC--VDGINNYTCLCPPEYTGELCEEKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPGYVGEHCDIDFDDCQDNKCKNGAHCTDAVNGYTCICPEGYSGLFCEFSPPMVLPRTSPCDNFDCQNGAQCIVRINEPICQCLPGYQGEKC 1156

HSP 3 Score: 82.0333 bits (201), Expect = 3.683e-16
Identity = 55/238 (23.11%), Postives = 103/238 (43.28%), Query Frame = 0 
Query:  132 ISKISRNDFLGYQNIKILDIFSNTLTEIEPNIFENLQNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERLWLSYNKLTSLPEGVFRNQR-LVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKNWFALKPNELYLEQNPLHCDCALYNTMQYFFNGNDKFLIFGNCKTPAELKDDDIYEDLYR------TNKLKCTACSLNECQNNSTCK--VVD 360
            I++I++ DF G +++++L +  N ++ IE   F++L+ L+++    N +++       G   L  +    N +  I R AF  A  ++ L L YN+++ + +G FR  R L +L + +N  T     +FN +                   K     L  N L+CDC L   +  +     +  ++  C  P+ L+  ++ E   R             +CS+  C    TC   +VD
Sbjct:   67 ITRITKTDFAGLRHLRVLQLMENKISTIERGAFQDLKELERLRLNRNHLQLFPELLFLGTAKLYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGAFRALRDLEVLTLNNNNITRLSVASFNHMP------------------KLRTFRLHSNNLYCDCHLA-WLSDWLRQRPRVGLYTQCMGPSHLRGHNVAEVQKREFVCSGHQSFMAPSCSVLHCPAACTCSNNIVD 285
The following BLAST results are available for this feature:
BLAST of TCONS_00004490-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT21.701e-3730.47Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE... [more]
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