TCONS_00004568-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004568-protein
Unique NameTCONS_00004568-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004568-protein ID=TCONS_00004568-protein|Name=TCONS_00004568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp
VYYIAKSEGYYSVVAVLKISLFLKVPGTYTSHYDGLQSVDGASPQIPPPE
CDDRTNTLPVFPGHREAMHQTQEELDAILKKDKDELYNHPLFPLLVCIFE
KCELATNRNPNTDKGLKPTELYTSASFGKDIDQYVKQLKSNKNIFTANTE
MDNLLIQSIQVLRFHLLELEKVHELCDNFCKRYIDCLKGKMPLDVVLEDT
DKKDIKAENNNNTTTNNNNNNNNTVIHNNNNAIENSDSAQSSPKTQNPSW
SFDISPHASKPPHLSHSSALPMTHADPLNNNNNNNNNNNNNNNINNNHHH
HQLDSVPGETDLNSAVSSETMPDSEDSIFKDDEDEKDKRKQKKRGIFPKM
ATNIMKAWLFQHLNHPYPSEEQKRQLANETGLTILQVNNWFINARRRIVQ
PMIDASNRAGKSPVVTVYKSRKRKNSGSDSISPGPFPYPPMGGHYSAPYL
NEHYSGMYSQYHNDITGASTTTPHAHYSPRSYGCGASDQHSMGVSLPPQT
SCAPMRQHSSSSYGTYRTSPVPPTPQSPFLGHTHPSMMPPSTNTPNLHGY
HQTHPASYPPPPPHQYTPHEELTPHTVHSVMNMHNI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002564XLOC_002564Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004568TCONS_00004568Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR032453PKNOX/Meis_N
IPR008422Homeobox_KN_domain
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 340..405
e-value: 1.4E-12
score: 57.8
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 338..401
score: 13.637
NoneNo IPR availableGENE3D1.10.10.60coord: 337..403
e-value: 1.2E-20
score: 72.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 497..562
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..345
NoneNo IPR availableCDDcd00086homeodomaincoord: 342..397
e-value: 1.07713E-14
score: 68.424
IPR032453Homeobox protein PKNOX/Meis, N-terminalPFAMPF16493Meis_PKNOX_Ncoord: 120..201
e-value: 3.1E-36
score: 123.5
IPR008422Homeobox KN domainPFAMPF05920Homeobox_KNcoord: 358..397
e-value: 1.6E-20
score: 72.6
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 340..410

Blast
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BLAST of TCONS_00004568-protein vs. Swiss-Prot (Human)
Match: MEIS3 (Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE=2 SV=3)

HSP 1 Score: 285.034 bits (728), Expect = 5.124e-91
Identity = 165/393 (41.98%), Postives = 226/393 (57.51%), Query Frame = 0 
Query:   32 HYDGLQSVDGASPQIPPPECDDRTNTLPVFPGHREAMHQTQEELDAI----LKKDKDELYNHPLFPLLVCIFEKCELAT---NRNPNTDKGLKPT-ELYTSASFGKDIDQYVKQLKSNKNIFTANTEMDNLLIQSIQVLRFHLLELEKVHELCDNFCKRYIDCLKGKMPLDVVLEDTDKKDIKAENNNNTTTNNNNNNNNTVIHNNNNAIENSDSAQSSPKTQNPSWSFDISPHASKPPHLSHSSALPMTHADPLNNNNNNNNNNNNNNNINNNHHHHQLDSVPGETDLNSAVSSETMPDSEDSIFKDDEDEKDKRKQKKRGIFPKMATNIMKAWLFQHLNHPYPSEEQKRQLANETGLTILQVNNWFINARRRIVQPMIDASNRAGKSPVVT 416
            HY G+  VDG +     PE      T+P  PG        Q     +    LK++KDE+Y HPLFPLL  +FEKCELAT           G  P  ++ +S SF +DI  + KQ++S + +F++N E+DNL+IQ+IQVLRFHLLELEKVH+LCDNFC RYI CLKGKMP+D+V+ED D    +   +   +  +  + NN  I ++       DS      T  PS                         +  L + + +N+++  +                    L+++V+S +      S  +D++ ++++R+ KKRGIFPK+ATNIM+AWLFQHL+HPYPSEEQK+QLA +TGLTILQVNNWFINARRRIVQPMID SNR G+    +
Sbjct:   10 HYPGI--VDGPAALASFPE------TVPAVPGPYGPHRPPQPLPPGLDSDGLKREKDEIYGHPLFPLLALVFEKCELATCSPRDGAGAGLGTPPGGDVCSSDSFNEDIAAFAKQVRSERPLFSSNPELDNLMIQAIQVLRFHLLELEKVHDLCDNFCHRYITCLKGKMPIDLVIEDRDGGCREDFEDYPASCPSLPDQNNMWIRDHE------DSGSVHLGTPGPS-------------------------SGGLASQSGDNSSDQGDG-------------------LDTSVASPS------SGGEDEDLDQERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQGAAFS 338
The following BLAST results are available for this feature:
BLAST of TCONS_00004568-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEIS35.124e-9141.98Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE... [more]
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