Elongation factor 1-alpha protein (polypeptide) - C. hemisphaerica

Overview
NameElongation factor 1-alpha protein
Unique NameTCONS_00004874-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004874-protein ID=TCONS_00004874-protein|Name=Elongation factor 1-alpha protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp
MPLEKKIKTHLSIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEKEAQ
EMGKGSFKYAWVLDKLKAERERGITIDIALWKFFSNKYEITIIDAPGHRD
FIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLGVKQ
LIVGVNKIDNTEPPYSETRFKEISKEIGTYVKKVGYNPKAVAIVPISGWH
GDNMIESSTNMSWYKGWTTEGTTEEKKPFKESGKTLLEALDAIQPPKRPV
SKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGMVVTFAPAGLSTEVKSV
EMHHESLTEAVPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVENFTA
QVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEENPK
MVKSGDAAMIELVPSKPMVVESFSDYAPLGRFAVRDMRQTVAVGVIKAVS
KKEKADGKSTKSATKASKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002760XLOC_002760Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004874TCONS_00004874Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000795TF_GTP-bd_dom
IPR004160Transl_elong_EFTu/EF1A_C
IPR004539Transl_elong_EF1A_euk/arc
IPR004161EFTu-like_2
IPR031157G_TR_CS
IPR009001Transl_elong_EF1A/Init_IF2_C
IPR009000Transl_B-barrel
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000795Transcription factor, GTP-binding domainPRINTSPR00315ELONGATNFCTcoord: 12..25
score: 68.18
coord: 107..118
score: 60.8
coord: 71..79
score: 77.92
coord: 151..160
score: 50.69
coord: 91..101
score: 71.21
IPR000795Transcription factor, GTP-binding domainPROSITEPS51722G_TR_2coord: 8..250
score: 58.518
NoneNo IPR availableGENE3D2.40.30.10coord: 249..341
e-value: 3.9E-37
score: 125.8
NoneNo IPR availablePFAMPF00009GTP_EFTUcoord: 8..242
e-value: 2.7E-51
score: 173.8
NoneNo IPR availableGENE3D2.40.30.10coord: 344..457
e-value: 1.2E-46
score: 157.2
NoneNo IPR availableGENE3D3.40.50.300coord: 5..246
e-value: 7.4E-40
score: 135.9
NoneNo IPR availableCDDcd03693EF1_alpha_IIcoord: 250..340
e-value: 2.899E-57
score: 185.063
NoneNo IPR availableCDDcd01883EF1_alphacoord: 12..247
e-value: 3.61845E-148
score: 423.826
NoneNo IPR availableCDDcd03705EF1_alpha_IIIcoord: 343..446
e-value: 1.0213E-67
score: 212.821
IPR004160Translation elongation factor EFTu/EF1A, C-terminalPFAMPF03143GTP_EFTU_D3coord: 342..449
e-value: 5.0E-41
score: 139.4
IPR004539Translation elongation factor EF1A, eukaryotic/archaealTIGRFAMTIGR00483TIGR00483coord: 6..454
e-value: 6.6E-214
score: 708.1
IPR004161Translation elongation factor EFTu-like, domain 2PFAMPF03144GTP_EFTU_D2coord: 268..333
e-value: 9.4E-15
score: 54.7
IPR031157Tr-type G domain, conserved sitePROSITEPS00301G_TR_1coord: 64..79
IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalSUPERFAMILY50465EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domaincoord: 346..449
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 246..341
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..269

Blast
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BLAST of Elongation factor 1-alpha protein vs. Swiss-Prot (Human)
Match: EF1A1 (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 758.829 bits (1958), Expect = 0.000e+0
Identity = 364/465 (78.28%), Postives = 403/465 (86.67%), Query Frame = 0 
Query:    6 KIKTHLSIVVIGHVDSGKSTSTGHLIYKCGGIDKRAIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFFSNKYEITIIDAPGHRDFIKNMITGTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKIDNTEPPYSETRFKEISKEIGTYVKKVGYNPKAVAIVPISGWHGDNMIESSTNMSWYKGWTTEGTTEEKKPFKESGKTLLEALDAIQPPKRPVSKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGMVVTFAPAGLSTEVKSVEMHHESLTEAVPGDNVGFNVKNVSVKEIKRGMVASDSKNDPAKGVENFTAQVIILNHPGEIHAGYQPVLDCHTAHVACKFAVLQQKIDRRSGKVLEENPKMVKSGDAAMIELVPSKPMVVESFSDYAPLGRFAVRDMRQTVAVGVIKAVSKKEKADGKSTKSATKASKKK 470
            K KTH++IVVIGHVDSGKST+TGHLIYKCGGIDKR IEKFEKEA EMGKGSFKYAWVLDKLKAERERGITIDI+LWKF ++KY +TIIDAPGHRDFIKNMITGTSQADCAVLIVA+  GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNK+D+TEPPYS+ R++EI KE+ TY+KK+GYNP  VA VPISGW+GDNM+E S NM W+KGW        +K    SG TLLEALD I PP RP  KPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFAP  ++TEVKSVEMHHE+L+EA+PGDNVGFNVKNVSVK+++RG VA DSKNDP      FTAQVIILNHPG+I AGY PVLDCHTAH+ACKFA L++KIDRRSGK LE+ PK +KSGDAA++++VP KPM VESFSDY PLGRFAVRDMRQTVAVGVIKAV KK    GK TKSA KA K K
Sbjct:    3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVT-----RKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQKAK 462
The following BLAST results are available for this feature:
BLAST of Elongation factor 1-alpha protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EF1A10.000e+078.28Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
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