TCONS_00004913-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004913-protein
Unique Name	TCONS_00004913-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	659

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004913-protein ID=TCONS_00004913-protein|Name=TCONS_00004913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp
MLNAWRKFTKKQDEKPVFPMGVAPVDQNMQRKYAKGVQYNMKLIIKGDRN
TGKSVLLQRLSGNKFKEDYIPTQEIQVANVNWNYQGNGDVVKTEVWDIVD
KSKKKRTPSGSLKITNDDTESEVKESNPIDGIALDAEFIDVYKGTHGVFL
TLDMTKAWTWQYVQRELTKIPLHIPVLILANFRDMGDHRVVEADEILAYI
EHLDRPSGSAEVYFTESSMKDSFGLQYVHNFLNMPFLMLQRETLMRQLEA
NTLEIDDVRERLSFNASSEQQNYDLFKEMLTDKVTLPQAIEADTVATNNS
SPSTPSVETPPLQPKEQPQPSPTTPQQPSQPPVVVAAPEPALIEQQQQAK
ETPQTASKFQAFTKLFSSKTAPVKEEPTLDISDLNVVPVEDFNPGELDHG
FLDTATASTNNTSKQVNRKPKKLDSDDDSDGGNPMVAAYEDFGDSDTDAE
RPSNNGVAAVDDEDIQPINDESEDDFEDFSSDEEEEESKVKVKAKKISVE
ENGGLSIMEKIKNKKKLEKQRREEEAIQKTLEQEVVVSTKELDLNDKDYA
TLDSDVEDDKTEGQDNVDMVVQPVISTPPETPDLSSASRPSTTKVEKAVV
VASVPADVEESDEDDGNETSSFVIAGDVDVDESWMNHSSSDDDDDNDGDV
EDQSTPVVS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002780	XLOC_002780	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004913	TCONS_00004913	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013684	MIRO-like
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007264	small GTPase mediated signal transduction
molecular_function	GO:0005525	GTP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 241..261
None	No IPR available	COILS	Coil	Coil	coord: 507..534
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 41..241 e-value: 0.0037 score: -70.4
None	No IPR available	GENE3D	3.40.50.300		coord: 23..254 e-value: 2.8E-20 score: 71.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 573..659
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 396..492
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 548..567
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..334
None	No IPR available	PROSITE	PS51419	RAB	coord: 32..291 score: 11.369
IPR013684	Mitochondrial Rho-like	PFAM	PF08477	Roc	coord: 42..99 e-value: 6.1E-7 score: 29.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 38..103 coord: 134..230

Blast

[Close]

BLAST of TCONS_00004913-protein vs. Swiss-Prot (Human)
Match: RABL6 (Rab-like protein 6 OS=Homo sapiens GN=RABL6 PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 2.552e-107
Identity = 195/459 (42.48%), Postives = 269/459 (58.61%), Query Frame = 0

Query:    1 MLNAWRKFTKKQDEKPV----FPMGVAPVDQNMQRKYAKGVQYNMKLIIKGDRNTGKSVLLQRLSGNKFKEDYIPTQEIQVANVNWNYQGNGDVVKTEVWDIVDKSKKKRTPSGSLKITNDDTESEVKESNPIDGIALDAEFIDVYKGTHGVFLTLDMTKAWTWQYVQRELTKIPLHIPVLILANFRDMGDHRVVEADEILAYIEHLDRPSGSAEVYFTESSMKDSFGLQYVHNFLNMPFLMLQRETLMRQLEANTLEIDDVRERLSFNASSEQQNYDLFKEMLTDKVTLPQAIEADTVATNNSSPSTPSVETP--PLQPKEQPQPSPTTPQQPSQPPVVVA----APEPALIEQQQQAKETPQTASKFQAFTKLFSSKTAPVKEEPTLDISDLNVVP-----VEDFNPGE-LDHGFLDTATASTNNTSKQVNRKPKKLDSDDDSD--GGNPMVAAYED 441
            M +A +K     D+ P      P G+  ++Q +QR++AKGVQYNMK++I+GDRNTGK+ L  RL G  F E+YIPTQEIQV +++W+Y+   D+VK EVWD+VDK K K+   G LK+ ND  E+E +       +ALDAEF+DVYK  +GV +  D+TK WT+ Y+ REL K+P H+PV +L N+RDMG+HRV+  D++  +I++LDRP GS+   + ESSMK+SFGL+Y+H F N+PFL LQRETL+RQLE N L++D   E LS    +E QNY +F EM+  +        A  +A N  SPS P  ++P  P         SP TPQ   Q P+  A     P     E           A +    ++LF +  A     P  +       P     VEDF P + LD  FL+  T + +   K+V  K  + DSD D +  GGNPMVA ++D
Sbjct:    1 MFSALKKLVGS-DQAPGRDKNIPAGLQSMNQALQRRFAKGVQYNMKIVIRGDRNTGKTALWHRLQGRPFVEEYIPTQEIQVTSIHWSYKTTDDIVKVEVWDVVDKGKCKKRGDG-LKMENDPQEAESE-------MALDAEFLDVYKNCNGVVMMFDITKQWTFNYILRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIDNLDRPPGSSYFRYAESSMKNSFGLKYLHKFFNIPFLQLQRETLLRQLETNQLDMDATLEELSVQQETEDQNYGIFLEMMEAR----SRGHASPLAANGQSPS-PGSQSPVVPAGAVSTGSSSPGTPQPAPQLPLNAAPPSSVPPVPPSEALPPPACPSAPAPRRSIISRLFGTSPATEAAPPPPEPVPAAEGPATVQSVEDFVPDDRLDRSFLEDTTPARDE--KKVGAKAAQQDSDSDGEALGGNPMVAGFQD 443

The following BLAST results are available for this feature:

BLAST of TCONS_00004913-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004913-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RABL6	2.552e-107	42.48	Rab-like protein 6 OS=Homo sapiens GN=RABL6 PE=1 S...	[more]

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TCONS_00004913-protein (polypeptide) - C. hemisphaerica