TCONS_00005457-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005457-protein
Unique NameTCONS_00005457-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length110

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005457-protein ID=TCONS_00005457-protein|Name=TCONS_00005457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MPPKKDAGKGQTKSQKPKPSGGGKAKKKKWSKGKTRDKLNNAILFDKATY
EKLYKEVPSYKLITPSVVSERLKIRGSLARQALKELLGKGLIKEVDDHRA
QKIYTRATKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003105XLOC_003105Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005457TCONS_00005457Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004977Ribosomal_S25
IPR011991WHTH_DNA-bd_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004977Ribosomal protein S25PFAMPF03297Ribosomal_S25coord: 11..107
e-value: 4.7E-45
score: 151.9
IPR004977Ribosomal protein S25PRODOMPD012268coord: 43..109
e-value: 1.0E-19
score: 230.0
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 9..106
e-value: 1.1E-4
score: 21.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Blast
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BLAST of TCONS_00005457-protein vs. Swiss-Prot (Human)
Match: RS25 (40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.581e-36
Identity = 67/82 (81.71%), Postives = 72/82 (87.80%), Query Frame = 0 
Query:   28 KKWSKGKTRDKLNNAILFDKATYEKLYKEVPSYKLITPSVVSERLKIRGSLARQALKELLGKGLIKEVDDHRAQKIYTRATK 109
            KKWSKGK RDKLNN +LFDKATY+KL KEVP+YKLITP+VVSERLKIRGSLAR AL+ELL KGLIK V  HRAQ IYTR TK
Sbjct:   33 KKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114
The following BLAST results are available for this feature:
BLAST of TCONS_00005457-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS254.581e-3681.7140S ribosomal protein S25 OS=Homo sapiens GN=RPS25... [more]
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