TCONS_00046879-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046879-protein
Unique NameTCONS_00046879-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1469

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046879-protein ID=TCONS_00046879-protein|Name=TCONS_00046879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1469bp
MDCDFVLPLNKEDLLSNRAADGYGVRKIYEPAKLGEKLEDCNIDYRNDGP
TAILKQFDVFYSVLHHLTRLQEEIKQQAWEMVLQNVTIHMNSLPMILDPE
GMDIELRKSHLNTVKMEIYILTQLIEEFESEAAKPDMNTDITKRGKGSKK
KSHQSWDWSKERNQVLSVINQFLQLELQRLWDPPIVEEEFANLFSSVCYK
MLENPVVVRQKEDKELVINILGQLIKRYKHQLGASMKMIQLLQHFEHLVS
PLAQAITTFVTDFGAKNLVSDVIREIGRMESSDLSRDTSGTRAFSQFLVE
LAYKIPNQVLPNISLLMAHLDGDSYTMRNGVLGVFGEIVIKVLSKEDLDE
SMKKSRESFLDKLEEHIHDVHAFVRSKDLQIWLRLCQEKAIPISRQSRII
ELILGRLLDKSSQVRKYAVQFLKASLIGNPFAAKLPIEQLTSSLEKETDK
LKEMDTSSQNEDNAPSNELDREWSELETVLWKELTKTSDEEEASGDEEME
EDRGEDEEAFQIYEDDEDGLDKALLKMQGFLKEKLHDKAIKMLSRVLEVW
GDVEELQVSDGDVQKMMESSDEVEEDEDEEDSEETEDKQSREKKLKKKLF
LLKKVYCLNASGNDMEIDLDAVTQQQQPTEEQILKNTQLEQQKVLVNYLK
DCVNFAHQMRRAIPILCQHLGSKTNSDVLETMDFFIAAHEFGLAHSEEGI
RRMANLVWSRDPIVKKAVVTAFERLYLDIACDNPRNKPTLIVNSLTSLIT
SANLGELTSLEELLCELMKQDLIPQNVVQLLWQRFALKLPQTTEKEQRGA
LNILSMVAGAEKDIIKSNLSVLVEHGLKYKSNFLLARDTCNAILKIKEKQ
KLGENKEPFRLPTEHGVFVQLESMILEGLAQLNDMTWVPFSEDAISVIYQ
LAEQPDVITGRLLKALVQTLFGGPPTNDQPLQQDEDDVFPKQSSQAPPSS
SQQNNKTHPRVVARVLSIAGYIALMHLYHLDVSILSELKRRHNIQEEEKE
RKGKKNGKTPGGSRRKSGARDSSIHKDSGLDDEMGVGGAAAEDAEAEYIR
KICEREIVTGDNLLSVFAPVAVMICKNPSAYKNAELRSSAALALSRFMMV
SSEFCDQHLQLVFTILEKSEFAIVRSNMMITLGDLCFRFPNLIEPWTPNL
YARLRDESVEVRKTAVTILTHLILNDMLKVKGQISEMAICLEDKEDKIAS
SAKSLFAELARKGNALYNIAPDIISRLSDPDTGVDESVFRTIMKYILQFI
QKDKQAESLVEKLCHRFRATRTDRQWRDLSFCLSLLPYTEKTFKKLMENI
RCYHDKLSDDDVYSCFTTIVSKSKKFSKQEFKTLVEEFESTIEGYHNKGV
EENADFDKAAKVLSQAATQENTTKNRKKSTRTARKPKPWEVNDSEEDVET
NDNEPSKHPSRKSTRNVTKKTTKDKSDDDFSDKENRKALPGGKRKTTEKK
RKTVRLNPVFSSDEEDLFT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029915XLOC_029915Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046879TCONS_00046879Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026003Cohesin_HEAT
IPR007673Condensin_cplx_su1
IPR024324Condensin_cplx_su1_N
IPR032682Cnd1_C
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0000278mitotic cell cycle
GO:0030261chromosome condensation
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030261 chromosome condensation
biological_process GO:0000278 mitotic cell cycle
cellular_component GO:0005634 nucleus
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 985..1005
NoneNo IPR availableCOILSCoilCoilcoord: 437..457
NoneNo IPR availableCOILSCoilCoilcoord: 566..586
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 995..1036
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 446..471
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..506
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1365..1469
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 560..590
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 924..958
IPR026003HEAT repeat associated with sister chromatid cohesion proteinPFAMPF12765Cohesin_HEATcoord: 394..422
e-value: 0.05
score: 13.7
IPR007673Condensin subunit 1PIRSFPIRSF017127Condensin_D2coord: 1..1453
e-value: 0.0
score: 1172.2
IPR024324Condensin complex subunit 1, N-terminalPFAMPF12922Cnd1_Ncoord: 74..234
e-value: 2.3E-36
score: 125.0
IPR032682Condensin complex subunit 1, C-terminalPFAMPF12717Cnd1coord: 1123..1284
e-value: 7.0E-54
score: 182.1
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 185..1343
e-value: 6.1E-44
score: 149.9
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 710..921
coord: 263..433
coord: 1081..1253
coord: 655..672

Blast
BLAST of TCONS_00046879-protein vs. Swiss-Prot (Human)
Match: CND1 (Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3)

HSP 1 Score: 954.896 bits (2467), Expect = 0.000e+0
Identity = 547/1451 (37.70%), Postives = 860/1451 (59.27%), Query Frame = 0
Query:    4 DFVLPLNKEDLLSNRAADGYGVRKIYEPAKLGEKLEDCNIDYRNDGPTAILKQFDVFYSVLHHLTRLQEEIKQQAWEMVLQNVTIHMNSLPMILDPEGMDIELRKSHLNTVKMEIYILTQLIEEFESEAAKPDM-NTDITKRGKGSKKKSHQSWDWSKERNQVLSVINQFLQLELQRLWDPPIVEEEFANLFSSVCYKMLENPVVVRQKE--DKELVINILGQLIKRYKHQLGASMKMIQLLQHFEHLVSPLAQAITTFVTDFGAKNLVSDVIREIGRMESSDLSRDTSGTRAFSQFLVELAYKIPNQVLPNISLLMAHLDGDSYTMRNGVLGVFGEIVIKVLSKEDLDESMKKSRESFLDKLEEHIHDVHAFVRSKDLQIWLRLCQEKAIPISRQSRIIELILGRLLDKSSQVRKYAVQFLKASLIGNPFAAKLPIEQLTSSLEKETDKLKEMDTSSQNEDNAPSNELDREWSELETVLWKEL--TKTSDEEEASGDEEMEEDRGEDEEAFQIYEDDEDGLDKALLKMQGFLKEKLHDKAIKMLSRVLEVWGDVEELQVSDGDVQKMMESSDEVEEDEDEEDSEETEDKQSREKKLKKKLFLLKKVYCLNASGNDMEIDLDAVTQQ----QQPT---EEQILKNTQLEQQKVLVNYLKDCVNFAHQMRRAIPILCQHLGSKTNSDVLETMDFFIAAHEFGLAHSEEGIRRMANLVWSRDPIVKKAVVTAFERLYLDIACDNPRNKPTLIVNSLTSLITSANLGELTSLEELLCELMKQDLIPQNVVQLLWQRFALKLPQTTEKEQRGALNILSMVAGAEKDIIKSNLSVLVEHGL--KYKSNFLLARDTCNAILKIKEKQK--LGENKEPFRLPTEHGVFVQLESMILEGLAQLNDMTWVPFSEDAISVIYQLAEQPDVITGRLLKALVQTLFGGPPTNDQPLQQDEDDVFPKQSSQAPPSSSQQNNKTHPRVVARVLSIAGYIALMHLYHLDVSILSELKRRHNIQEEEKERKGKKNGKTPGGSRRKSGARDSSIHKDSGLDDEMGVGGAAAEDAEAEYIRKICEREIVTGDNLLSVFAPVAVMICKNPSAYKNAELRSSAALALSRFMMVSSEFCDQHLQLVFTILEKSEFAIVRSNMMITLGDLCFRFPNLIEPWTPNLYARLRDESVEVRKTAVTILTHLILNDMLKVKGQISEMAICLEDKEDKIASSAKSLFAELARKGNALYNIAPDIISRLSDPDTGVDESVFRTIMKYILQFIQKDKQAESLVEKLCHRFRATRTDRQWRDLSFCLSLLPYTEKTFKKLMENIRCYHDKLSDDDVYSCFTTIVSKSKKFSKQEFKTLVEEFESTIEGYHNKGVEENADFDKAAKVLSQAATQENTTKNRKKSTRTARKPKPWEVNDSEEDVETNDNEPSKHPSRKSTR---NVTKKTTKDKSDDDFSDKEN 1435
            +F LPL+ E+LL +   + Y V+++     L  +L      +R  GP A+L+ FD  YS+LHH   +   +K+   + +++ V+ H   LP ILD   +    R +HLN +KM  Y L +L+E FE+ A++ ++ + D+  +GK ++ K+   +DW +ER  +L ++ Q LQL+++ LW+  I+EEEF +L +  CY++LENP +  QK    +E + ++LG  + RY H L A++K+IQ+LQHFEHL   L  A++ + TD+G K++V +++REIG+    +LSRD SGT+ F+ FL ELA ++P  ++ ++ +L+ HLDG++Y MRN VL    E+V++VLS + L+ + + +R+ FLD L+ H HDV++FVRS+ LQ++ R+ Q+KA+P++R   ++ L +GRL DKS  V K A+Q L + L  NPF+ KL    L   L+KET KL+EM   +Q    A S  LD E  E E +L  EL  T     +   G+EE+ E     E       +D  G      ++   L +  + KAI +L+R  E  G  +E                E     D E+SEET       + L     + K         N  E   + VT Q     +P     E+   N +L +Q++LV YL+D  +F+ ++  AI I+ + +   T + V E ++FF+   +FG+  +  G+RRM  L+WS++P V++AV+ A+ +LYL+   D+ R K   ++ +L+ L+  A++G +  LEE+LCE +++D +   V QLLW+R   K+      E+  ++ +L M+A  + +I+ SNL  LV  GL  K+  ++ LA+  C+AI  I +++K  LG+   PFRLP EH +F +L   + +G     D  W+PF E A+++IYQLAE P+VI  ++L+   +          Q L++ E+    K++SQ  P  S     T   ++  +LS+AG +AL  L HL+ ++  EL RR  ++EE++ +      K P         ++ +   ++ +++E+G+ GA A+D EAE IR ICE E++ G   L+ F P+ + +C NP  Y N +L ++A+LAL +F M+S+ FCD  L+L+FT+LEKS   IVRSN+M+  GDL  RFPNL++PWTP+LYARLRD + +VRKTA  ++THLIL DM+KVKGQ+SEMA+ L D E +IA+ AK+ F EL+ KGNA+YN+ PDIISRLSDP+ GV+E  F TIMK +L +I KDKQ ESLVEKLC RFR +RT+RQ RDL++C+S LP TE+  +K+++N  C+ DKLSD+ ++S F ++V K ++ +K E K +++EFE  +   H +G++   + +     + QA +Q   +    K   T  + +P     S+ D  T   EP     R++TR   N  ++ +K K    FS  E+
Sbjct:    7 EFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHFDTIYSILHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMNCYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLDIRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSATVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGFAAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARDTRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLVCKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEM--RAQRRTAAASAVLDPE-EEWEAML-PELKSTLQQLLQLPQGEEEIPEQIANTETT-----EDVKG------RIYQLLAKASYKKAI-ILTR--EATGHFQE---------------SEPFSHIDPEESEET-------RLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKPNMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFFVMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNLSLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKV-ACCPLERCSSVMLLGMMARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLPQEHRLFERLRETVTKGFVH-PDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAK----------QALEKLEE----KRTSQEDPKESPAMLPTF--LLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQEHKT-----KDP---------KEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLKVCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLIDPEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIFSAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELE-----IGQAGSQRAPS---AKKPSTGSRYQPLASTASDNDFVT--PEP-----RRTTRRHPNTQQRASKKKPKVVFSSDES 1370          
The following BLAST results are available for this feature:
BLAST of TCONS_00046879-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CND10.000e+037.70Condensin complex subunit 1 OS=Homo sapiens GN=NCA... [more]
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